Contig 000183:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032J15Sequence579000183 (3)774008260 (2)ref|XP_009598530.1|1e-33PREDICTED: protein FRIGIDA-ESSENTIAL 1-like [Nicotiana tomentosiformis]
JMFF038E15Sequence453000183 (3)379008260 (2)ref|XP_010686420.1|9e-11PREDICTED: uncharacterized protein LOC104900642 isoform X1 [Beta vulgaris subsp
JMFS044F02Sequence602000183 (3)

Alignment

This contig is upended


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JMFS044F02+                                            GTTAATTCCTCAGCATTATCAGCTCCC
                      ____________________________________________________________
consensus                                              GTTAATTCCTCAGCATTATCAGCTCCC
 
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JMFS044F02+           TCTTTTCTCGCGACTTCTTCCTCCAAGTCTTGTTTTTTATGATCATGTTCATTGAACAAT
JMFF032J15+                                TCCAAGTCTTGTTTTTTATGATCATGTTCATTGAACAAT
                      ____________________________________________________________
consensus             TCTTTTCTCGCGACTTCTTCCTCCAAGTCTTGTTTTTTATGATCATGTTCATTGAACAAT
 
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JMFS044F02+           TTGGCTGCTGCTTCTGCAATTCCTGCTTCAGCAGTGCCCTTTCCGCTATCTTCTCCATTG
JMFF032J15+           TTGGCTGCTGCTTCTGCAATTCCTGCTTCAGCAGTGCCCTTTCCGCTATCTTCTCCATTG
                      ____________________________________________________________
consensus             TTGGCTGCTGCTTCTGCAATTCCTGCTTCAGCAGTGCCCTTTCCGCTATCTTCTCCATTG
 
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JMFS044F02+           GATGGGGCTAATTCTTGGTCACTATCTGCTCCCGCTTCTTCTACATCTTCCTTTTCCCCC
JMFF038E15+                                      GCTCCCGCTTCTTCTACATCTTCCTTTTCCCCC
JMFF032J15+           GATGGGGCTAATTCTTGGTCACTATCTGCTCCCGCTTCTTCTACATCTTCCTTTTCCCCC
                      ____________________________________________________________
consensus             GATGGGGCTAATTCTTGGTCACTATCTGCTCCCGCTTCTTCTACATCTTCCTTTTCCCCC
 
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JMFS044F02+           TCCTCCTCTTCTTCTTCTACTTCTTCCACTTCTTCTTCCTCTTCAACCTCAATTTCTTCC
JMFF038E15+           TCCTCCTCTTCTTCTTNTACTTCTTCCACTTCTTCTTCCTCTTCAACCTCAATTTCTTCC
JMFF032J15+           TCCTCCTCTTCTTCTTCTACTCCTTCCACTTCTTCTTCCTCTTCAACCTCAATTTCTTCC
                      ____________________________________________________________
consensus             TCCTCCTCTTCTTCTTCTACTTCTTCCACTTCTTCTTCCTCTTCAACCTCAATTTCTTCC
 
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JMFS044F02+           TCTATTTCTTCTTCTATCTCCTCGTACTCGTACTCGTACTCCTCATCCTCCATCTCCTGT
JMFF038E15+           TCTATTTCTTCTTCTATCTCCTCGTACTCGTACTCGTACTCCTCATCCTCCATCTCCTGT
JMFF032J15+           TCTATTTCTTCTTCTATCTCCTCGTACTCGTACTCGTAATCTTCATCCTCCATCTCCTGT
                      ____________________________________________________________
consensus             TCTATTTCTTCTTCTATCTCCTCGTACTCGTACTCGTACTCCTCATCCTCCATCTCCTGT
 
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JMFS044F02+           TCGGACTTGGAGGCAGGGTCCACGGTGTTGTGTGGTGGATCAACCGCCGCCGCAGCGGAG
JMFF038E15+           TCGGACTTGGAGGCAGGGTCCACGGTGTTGTGTGGTGGATCAACCGCCGCCGCAGCGGAG
JMFF032J15+           TCGGACTTGGAGGCAGGGTCCACGGTGTTGTGTGGTGGATCAACCGCCGCCGCAGCGGAG
                      ____________________________________________________________
consensus             TCGGACTTGGAGGCAGGGTCCACGGTGTTGTGTGGTGGATCAACCGCCGCCGCAGCGGAG
 
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JMFS044F02+           GACATCGCATGCAGCGGTGGCGTAGCTCCGATGAAGAGGTGATGTGGAGTTGATTAGGGT
JMFF038E15+           GACATCGCATGCAGCGGTGGCGTAGCTCCGATGAAGAGGTGATGTGGAGTTGATTAGGGT
JMFF032J15+           GACATCGCATGCAGCGGTGGCGTAGCTCCGATGAAGAGGTGATGTGGAGTTGATTAGGGT
                      ____________________________________________________________
consensus             GACATCGCATGCAGCGGTGGCGTAGCTCCGATGAAGAGGTGATGTGGAGTTGATTAGGGT
 
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JMFS044F02+           TAGGGTTCCGTATACCGTAACACAGACCTCACCGTCTGAAAAGTGACATGCATTTGACGG
JMFF038E15+           TAGGGTTCCGTATACCGTAACACAGACCTCACCGTCTGAAAAGTGACATGCATTTGACGG
JMFF032J15+           TAGGGTTCCGTATACCGTAACACAGACCTCACCGTCTGAAAAGTGACATGCATTTGACGG
                      ____________________________________________________________
consensus             TAGGGTTCCGTATACCGTAACACAGACCTCACCGTCTGAAAAGTGACATGCATTTGACGG
 
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JMFS044F02+           CGACGAAAAACCAGTAAACCGCCGACAACAATGGCTGAAACGCTAGAGAATACAGAACTA
JMFF038E15+           CGACGAAAAACCAGTAAACCGCCGACAACAATGGCTGAAACGCTAGAGAATACAGAACTA
JMFF032J15+           CGACGAAAAACCAGTAAACCGCCGACAACAATGGCTGAAACGCTAGAGAATACAGAACTA
                      ____________________________________________________________
consensus             CGACGAAAAACCAGTAAACCGCCGACAACAATGGCTGAAACGCTAGAGAATACAGAACTA
 
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JMFS044F02+           TAATCCCCCTCTGGATTCTGATTTGGGGATCACAA                         
JMFF038E15+           TAATCCCCCTCTGGATTCTGATTTGGGGATCACAATTTCATTCTTGTATGGATTGAT   
JMFF032J15+           TAATCCCCCTCTGGATTCTGATTTGGGGATCACAATTTCATTCTTGTATGGATTGATACT
                      ____________________________________________________________
consensus             TAATCCCCCTCTGGATTCTGATTTGGGGATCACAATTTCATTCTTGTATGGATTGATACT