Contig 000182:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001P07Sequence632000182 (5)ref|XP_004251586.1|3e-71PREDICTED: probable histone H2A variant 3 [Solanum lycopersicum] ref|XP_00636686675000182 (5)ref|XP_004251586.1|4e-71PREDICTED: probable histone H2A variant 3 [Solanum lycopersicum] ref|XP_00636686
JMFF032G18Sequence549000182 (5)ref|XP_004251586.1|1e-69PREDICTED: probable histone H2A variant 3 [Solanum lycopersicum] ref|XP_00636686733000182 (5)ref|XP_004251586.1|7e-71PREDICTED: probable histone H2A variant 3 [Solanum lycopersicum] ref|XP_00636686
JMFN016L22Sequence606000182 (5)ref|XP_004251586.1|1e-71PREDICTED: probable histone H2A variant 3 [Solanum lycopersicum] ref|XP_00636686

Alignment

This contig is upended


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rJMFF032G18-                       AGTGATTGTAGTAGCATCAACAGAGAACCCCTGTCCAGAACAACTAA
                      ____________________________________________________________
consensus                          AGTGATTGTAGTAGCATCAACAGAGAACCCCTGTCCAGAACAACTAA
 
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rJMFF032G18-          AGCGAGCCTAGAGTAGAGCCACAGCTAGATAGATGCAATATGGGTAAACACATTACAGGG
rJMFF001P07-                                               ATATGGGTAAACACATTACAGGG
                      ____________________________________________________________
consensus             AGCGAGCCTAGAGTAGAGCCACAGCTAGATAGATGCAATATGGGTAAACACATTACAGGG
 
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rJMFF032G18-          TGGTCATAAAATCATAAACGAACCATGTTCAATATAGCACCCGCTAACAGCTAATCAGAA
rJMFF001P07-          TGGTCATAAAATCATAAACGAACCATGTTCAATATAGCACCCGCTAACAGCTAATCAGAA
                      ____________________________________________________________
consensus             TGGTCATAAAATCATAAACGAACCATGTTCAATATAGCACCCGCTAACAGCTAATCAGAA
 
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rJMFF032G18-          CCTAGATGGAACATTGAAACAAACTGATGAGTACACAGTTCCATGTATATGTTGTTTCCG
rJMFF001P07-          CCTAGATGGAACATTGAAACAAACTGATGAGTACACAGTTCCATGTATATGTTGTTTCCG
JMFN016L22+                                                               TGTTTCGG
JMFF001P07+                                                   CCATGTATATGTTGTTTCCG
                      ____________________________________________________________
consensus             CCTAGATGGAACATTGAAACAAACTGATGAGTACACAGTTCCATGTATATGTTGTTTCCG
 
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rJMFF032G18-          GACACAAACCAACAGGCAGGAAATGAAATCTTGTAGACATATCATTCCTTGGAAGATTTG
rJMFF001P07-          GACACAAACCAACAGGCAGGAAATGAAATCTTGTAGACATATCATTCCTTGGAAGATTTG
JMFN016L22+           GACACNAACCAACAGGCAGGAAATGAAATCTTGTAGACATATCATTCCTTGGAAGATTTG
JMFF001P07+           GACACAAACCAACAGGCAGGAAATGAAATCTTGTAGACATATCATTCCTTGGAAGATTTG
JMFF032G18+                                                              GAAGATTTG
                      ____________________________________________________________
consensus             GACACAAACCAACAGGCAGGAAATGAAATCTTGTAGACATATCATTCCTTGGAAGATTTG
 
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rJMFF032G18-          TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
rJMFF001P07-          TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
JMFN016L22+           TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
JMFF001P07+           TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
JMFF032G18+           TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
                      ____________________________________________________________
consensus             TTGATGAGTGACTTGTGGATGTGCGGGATCACGCCCCCTCCAGCTATTGTTCCTTTGATC
 
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rJMFF032G18-          AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
rJMFF001P07-          AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
JMFN016L22+           AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
JMFF001P07+           AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
JMFF032G18+           AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
                      ____________________________________________________________
consensus             AGCGTATCCAGTTCTTCATCTCCTCGGATTGCCAGCTGCAAATGCCTCGGGGTGATACGT
 
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rJMFF032G18-          TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
rJMFF001P07-          TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
JMFN016L22+           TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
JMFF001P07+           TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
JMFF032G18+           TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
                      ____________________________________________________________
consensus             TTCACCTTAAGATCCTTACTCGCATTTCCAGCCAGCTCCAACACTTCAGCAGTCAAATAC
 
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rJMFF032G18-          TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
rJMFF001P07-          TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
JMFN016L22+           TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
JMFF001P07+           TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
JMFF032G18+           TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
                      ____________________________________________________________
consensus             TCCAGGATAGCGGCAGAGTAAACAGCGGCTGTAGCTCCCACCCTGCCATTTGCTGTGGTT
 
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rJMFF032G18-          CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCGCGAGAGGAG
rJMFF001P07-          CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCACGAGAGGAG
JMFN016L22+           CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCACGAGAGGAG
JMFF001P07+           CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCACGAGAGGAG
JMFF032G18+           CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCGCGAGAGGAG
                      ____________________________________________________________
consensus             CTCTCTTTCAGCAAACGATGGATACGCCCCACTGGGAACTGGAGACCAGCACGAGAGGAG
 
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rJMFF032G18-          CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
rJMFF001P07-          CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
JMFN016L22+           CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
JMFF001P07+           CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
JMFF032G18+           CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
                      ____________________________________________________________
consensus             CGCGAGGTGGGTTTCTTCTTGTCCTTGTCTTTGTCTTTGTTGGCCGCAGCAACTGAGGTT
 
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rJMFF032G18-          TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
rJMFF001P07-          TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
JMFN016L22+           TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
JMFF001P07+           TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
JMFF032G18+           TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
                      ____________________________________________________________
consensus             TTCCCCATAATCAAACCCTTAGCTCCTTTTCCCGACATCTTTCCCGCCTAAATTTCTCCC
 
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rJMFF032G18-          GATTTAAAAGAGATGAATGGAGAGGA                                  
rJMFF001P07-          GATTTAAAAGAGATGAATGGAGAGGAAGGAGGGTTTCGATTTTGCGCAGTA         
JMFN016L22+           GATTTAAAAGAGATGAATGGAGAGGAAGGAGGGTTTCGATTTTGCGCAGTAGCTAAGCGA
JMFF001P07+           GATTTAAAAGAGATGAATGGAGAGGAAGGAGGGTTTCGATTTTGCGCAGTAGCTAAGCGA
JMFF032G18+           GATTTAAAAGAGATGAATGGAGAGGAAGGAGGGTTTCGATTTTGCGCAGTAGCTAAGCGA
                      ____________________________________________________________
consensus             GATTTAAAAGAGATGAATGGAGAGGAAGGAGGGTTTCGATTTTGCGCAGTAGCTAAGCGA
 
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JMFN016L22+           GAGGGTTCGAAGAGAGAGAGAGAAGGATAGAGCGGAGAGATGGAC               
JMFF001P07+           GAGGGTTCGAAGAGAGAGAGAGAAGGATAGAGCGGAGAGATGGACAATAGCCTACC    
JMFF032G18+           GAGGGTTCGAAGAGAGAGAGAGAAGGATAGAGCGGAGAGATGGACAATAGCCTACCAGAT
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consensus             GAGGGTTCGAAGAGAGAGAGAGAAGGATAGAGCGGAGAGATGGACAATAGCCTACCAGAT