Contig 000176:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018G03Sequence532000176 (2)ref|XP_009792953.1|3e-22PREDICTED: transcription factor bHLH49-like isoform X1 [Nicotiana sylvestris]727020176emb|CBI27416.3|1e-26unnamed protein product [Vitis vinifera]
JMFF030O19Sequence437000176 (2)ref|XP_009792953.1|5e-07PREDICTED: transcription factor bHLH49-like isoform X1 [Nicotiana sylvestris]657001268 (3)gb|EYU19938.1|2e-98hypothetical protein MIMGU_mgv1a012090mg [Erythranthe guttata]

Alignment

This contig is upended


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JMFF018G03+                                                      TCTATCGACACCGCCTC
                      ____________________________________________________________
consensus                                                        TCTATCGACACCGCCTC
 
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JMFF018G03+           TTAAGGCGGTGGTGAACCCGCCACTCGTTCCACCTCCGAATGGGCTAGAAATGCTAACAT
                      ____________________________________________________________
consensus             TTAAGGCGGTGGTGAACCCGCCACTCGTTCCACCTCCGAATGGGCTAGAAATGCTAACAT
 
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JMFF018G03+           TGCTATGAACATTAGCATCACAAAAGCCTAAGCTTGCTGAACTTGCAGATTGATCCCAAA
                      ____________________________________________________________
consensus             TGCTATGAACATTAGCATCACAAAAGCCTAAGCTTGCTGAACTTGCAGATTGATCCCAAA
 
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JMFF018G03+           CATTCAAGCAAAACGCATCCACCATCGGGTTGCTATTGGGAATCATTCCAATAGGCGTGT
JMFF030O19+                                                      CATTCCAATAGGCGTGT
                      ____________________________________________________________
consensus             CATTCAAGCAAAACGCATCCACCATCGGGTTGCTATTGGGAATCATTCCAATAGGCGTGT
 
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JMFF018G03+           TCGCGAGATCGGAACCATTGATTTGCCAGTCAGATGACACATTTGCTGACTGAAAGCTCA
JMFF030O19+           TCGCGAGATCGGAACCATTGATTTGCCAGTCAGATGACACATTTGCTGACTGAAAGCTCA
                      ____________________________________________________________
consensus             TCGCGAGATCGGAACCATTGATTTGCCAGTCAGATGACACATTTGCTGACTGAAAGCTCA
 
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JMFF018G03+           TAGCATCATCACCTCTCTTTGCTGCCATGGCCTCATCCTTGCCACCCTTATCCATTCTTG
JMFF030O19+           TAGCATCATCACCTCTCTTTGCTGCCATGGCCTCATCCTTGCCACCCTTATCCATTCTTG
                      ____________________________________________________________
consensus             TAGCATCATCACCTCTCTTTGCTGCCATGGCCTCATCCTTGCCACCCTTATCCATTCTTG
 
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JMFF018G03+           AAAACAGTAGCAAATTTCAGAAACAAAATCCTCTCCCTTGCAGCTTATTTCAGATAGTTT
JMFF030O19+           AAAACAGTAGCAAATTTCAGAAACAAAATCCTCTCCCTTGCAGCTTATTTCAGATAGTTT
                      ____________________________________________________________
consensus             AAAACAGTAGCAAATTTCAGAAACAAAATCCTCTCCCTTGCAGCTTATTTCAGATAGTTT
 
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JMFF018G03+           GCTACTTTTGGTTCTCTGCAAGACATTCTTTGAAGGTTTCATTCAAGAAAAGGGGAAAAA
JMFF030O19+           GCTACTTTTGGTTCTCTGCAAGACATTCTTTGAAGGTTTCATTCAAGAAAAGGGGAAAAA
                      ____________________________________________________________
consensus             GCTACTTTTGGTTCTCTGCAAGACATTCTTTGAAGGTTTCATTCAAGAAAAGGGGAAAAA
 
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JMFF018G03+           GGGAGAGAAAATACAACAAAATCTCTTGAATTTAGGCTCTGGGGAGTGGGGACTTTGTTC
JMFF030O19+           GGGAGAGAAAATACAACAAAATCTCTTGAATTTAGGCTCTGGGGAGTGGGGACTTTGTTC
                      ____________________________________________________________
consensus             GGGAGAGAAAATACAACAAAATCTCTTGAATTTAGGCTCTGGGGAGTGGGGACTTTGTTC
 
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JMFF018G03+           ACAACAGTTCATACTCTGCTAGATCCTGTCACTCT                         
JMFF030O19+           ACAACAGTTCATACTCTGCTAGATCCTGTCACTCTATCAAGAAAATAAACACCCAAGAAA
                      ____________________________________________________________
consensus             ACAACAGTTCATACTCTGCTAGATCCTGTCACTCTATCAAGAAAATAAACACCCAAGAAA
 
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JMFF030O19+           GTAATAAAGATGACAGAGAAGAAGAGAGAGAGAGAGAGAGAGAAATGGGAAATTGAAGGA
                      ____________________________________________________________
consensus             GTAATAAAGATGACAGAGAAGAAGAGAGAGAGAGAGAGAGAGAAATGGGAAATTGAAGGA