Contig 000175:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004K05Sequence526000175 (3)131001136 (2)
JMFF020L10Sequence569000175 (3)
JMFF030N17Sequence508000175 (3)345001136 (2)

Alignment

This contig is upended


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JMFF020L10+                                          TCGCATTTCACGGTGATTTCTGATTGAAC
                      ____________________________________________________________
consensus                                            TCGCATTTCACGGTGATTTCTGATTGAAC
 
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JMFF020L10+           GTCGGTGGTTTCTCCTTCCCATTTCTTATCTTCCAAGCAATGCTCTGCTTTCCTCTTTCT
JMFF004K05+                       TCCTTCCCATTTCTTATCTTCCAAGCAATGCTCTGCTTTCCTCTTTCT
JMFF030N17+                                         TTCCAAGCAATGCTCTGCTTTCCTCTTTCT
                      ____________________________________________________________
consensus             GTCGGTGGTTTCTCCTTCCCATTTCTTATCTTCCAAGCAATGCTCTGCTTTCCTCTTTCT
 
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JMFF020L10+           CGTCGACGTCGCGGTTCCCGTTAGCTCTGCCGCCGCCGGGGGTGGCGTTTTGGTCGTTTG
JMFF004K05+           CGTCGACGTCGCGGTT-CCGTTAGCTCTGCCGCCGCCGGGGGTGGCGTTTTGGTCGTTTG
JMFF030N17+           CGTCGACGTCGCGGTT-CCGTTAGCTCTGCCGCCGCCGGGGGTGGCGTTTTGGTCGTTTG
                      ____________________________________________________________
consensus             CGTCGACGTCGCGGTT-CCGTTAGCTCTGCCGCCGCCGGGGGTGGCGTTTTGGTCGTTTG
 
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JMFF020L10+           CTTTTGACGACGTCGGTACCCGCCGCCGCCGTTATAGATGAACTGGAACGCGACAATTTC
JMFF004K05+           CTTTTGACGACGTCGGTA-CCGCCGCCGCCGTTATAGATGAACTGGAACGCGACAATTTC
JMFF030N17+           CTTTTGACGACGTCGGTA-CCGCCGCCGCCGTTATAGATGAACTGGAACGCGACAATTTC
                      ____________________________________________________________
consensus             CTTTTGACGACGTCGGTA-CCGCCGCCGCCGTTATAGATGAACTGGAACGCGACAATTTC
 
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JMFF020L10+           CCGGTTTCTCTCCCATGCACGTCCACGACGGCGTTCGGGGAGTTTTCCTCGGCGTGCCAG
JMFF004K05+           CCGGTTTCTCTCCCATGCACGTCCACGACGGCGTTCGGGGAGTTTTCCTCGGCGTGCCAG
JMFF030N17+           CCGGTTTCTCTCCCATGCACGTCCACGACGGCGTTCGGGGAGTTTTCCTCGGCGTGCCAG
                      ____________________________________________________________
consensus             CCGGTTTCTCTCCCATGCACGTCCACGACGGCGTTCGGGGAGTTTTCCTCGGCGTGCCAG
 
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JMFF020L10+           AGCGACGCCAAGTTAGTCAAATTACCGTCTAGCAACGCCGGAAAGGGATTCTCCGGGGCC
JMFF004K05+           AGCGACGCCAAGTTAGTCAAATTACCGTCTAGCAACGCCGGAAAGGGATTCTCCGGGGCC
JMFF030N17+           AGCGACGCCAAGTTAGTCAAATTACCGTCTAGCAACGCCGGAAAGGGATTCTCCGGGGCC
                      ____________________________________________________________
consensus             AGCGACGCCAAGTTAGTCAAATTACCGTCTAGCAACGCCGGAAAGGGATTCTCCGGGGCC
 
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JMFF020L10+           GGAGCCCCGGCGCCGGCGAGGTGATTGTCATGAATAATGGGCTGGTAAAGACGCTGGAAA
JMFF004K05+           GGAGCCCCGGCGCCGGCGAGGTGATTGTCATGAATAATGGGCTGGTAAAGACGCTGGAAA
JMFF030N17+           GGAGCCCCGGCGCCGGCGAGGTGATTGTCATGAATAATGGGCTGGTAAAGACGCTGGAAA
                      ____________________________________________________________
consensus             GGAGCCCCGGCGCCGGCGAGGTGATTGTCATGAATAATGGGCTGGTAAAGACGCTGGAAA
 
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JMFF020L10+           ATGGCCCTCTGCCTTTCCAGTACGCTCAAATCGGCGGCGGAGTAGGAAACATTATTATTC
JMFF004K05+           ATGGCCCTCTGCCTTTCCAGTACGCTCAAATCGGCGGCCGAGTAGGAAACATTATTATTC
JMFF030N17+           ATGGCCCTCTGCCTTTCCAGTACGCTCAAATCGGCGGCGGAGTAGGAAACATTATTATTC
                      ____________________________________________________________
consensus             ATGGCCCTCTGCCTTTCCAGTACGCTCAAATCGGCGGCGGAGTAGGAAACATTATTATTC
 
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JMFF020L10+           TCAGGCGAAGACTGCGCGCAGCGAAGCATTGTCACAGTTCCGGTAGGTAGTCGCTGACGT
JMFF004K05+           TCAGGCGAAGACTGCGCGCAGCGAAGCATTGTCACAGTTCCGGTAGGTAGTCGCTGACGT
JMFF030N17+           TCAGGCGAAGACTGCGCGCAGCGAAGCATTGTCACAGTTCCGGTAGGTAGTCGCTGACGT
                      ____________________________________________________________
consensus             TCAGGCGAAGACTGCGCGCAGCGAAGCATTGTCACAGTTCCGGTAGGTAGTCGCTGACGT
 
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JMFF020L10+           AATTCTCAGGCGAAGGAAAAGCAAACCAGTCAAGTCTCGACTCTGATCCGTTGTTCTGAT
JMFF004K05+           AATTCTCAGGCGAAGGAAAAGCAAACCAGTCAAGTCTCGACTCTGATCCGTTGTTCTGAT
JMFF030N17+           AATTCTCAGGCGAAGGAAAAGCAAACCAGTCAAGTCTCGACTCTGATCCGTGGTTCTGAT
                      ____________________________________________________________
consensus             AATTCTCAGGCGAAGGAAAAGCAAACCAGTCAAGTCTCGACTCTGATCCGTTGTTCTGAT