Contig 000172:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030G20Sequence438000172 (3)ref|XP_009795257.1|4e-41PREDICTED: fasciclin-like arabinogalactan protein 7 [Nicotiana sylvestris]725000172 (3)ref|XP_009802737.1|5e-30PREDICTED: fasciclin-like arabinogalactan protein 7 [Nicotiana sylvestris] ref|
JMFN011I17Sequence623000172 (3)ref|XP_009802737.1|2e-48PREDICTED: fasciclin-like arabinogalactan protein 7 [Nicotiana sylvestris] ref|

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF030G20- TGCATAATTTAACTCGTATTTTGGATGATG
                      ____________________________________________________________
consensus TGCATAATTTAACTCGTATTTTGGATGATG
 
. : . : . : . : . : . :
rJMFF030G20- CATGTCTAATTCAAATCAACCGTCTGATCAATTCGGTTACAGTTGCCCCACTTTTCATTC
                      ____________________________________________________________
consensus CATGTCTAATTCAAATCAACCGTCTGATCAATTCGGTTACAGTTGCCCCACTTTTCATTC
 
. : . : . : . : . : . :
rJMFF030G20- ATTACTGATTGAACTTAAGACCTCTAATAATTTCTCATGTAAGATGTTTCAATTATGAAA
                      ____________________________________________________________
consensus ATTACTGATTGAACTTAAGACCTCTAATAATTTCTCATGTAAGATGTTTCAATTATGAAA
 
. : . : . : . : . : . :
rJMFF030G20- TTCAATCATCTGCCAATAGAAATACTAATAATCCATTTGTGTACAACAATTGTAATGAAT
JMFN011I17+ TAATCCATTTGTGTACAACAATTGTAATGAAT
                      ____________________________________________________________
consensus TTCAATCATCTGCCAATAGAAATACTAATAATCCATTTGTGTACAACAATTGTAATGAAT
 
. : . : . : . : . : . :
rJMFF030G20- AGGAGAGAACCAATTAACAAAGTAAGTGACGAAAAAGGTGGGAGACAATTGAACCAATGT
JMFN011I17+ AGGAGAGAACCCATTAACAAAGTAAGTGACGAAAAAGGTGGGAGACAATTGAACCAATGT
                      ____________________________________________________________
consensus AGGAGAGAACCCATTAACAAAGTAAGTGACGAAAAAGGTGGGAGACAATTGAACCAATGT
 
. : . : . : . : . : . :
rJMFF030G20- GAACTCCACAATAGCAGATAACTACTTACTCCAAGAAGCCTATAAGAAGAGAAGGGTATA
JMFN011I17+ GAACTCCACAATAGCAGATAACTACTTACTCCAAGAAGCCTATAAGAAGAGAAGGGTATA
                      ____________________________________________________________
consensus GAACTCCACAATAGCAGATAACTACTTACTCCAAGAAGCCTATAAGAAGAGAAGGGTATA
 
. : . : . : . : . : . :
rJMFF030G20- TCCACCCACAATGGCGAAAACCAAATGGTTGAGAAGACCCGAGGTCGTTATCTTGTGAGA
JMFN011I17+ TCCACCCACAATGGCGAAAACCAAATGGTTGAGAAGACCCGAGGTCGTTATCTTGTGAGA
                      ____________________________________________________________
consensus TCCACCCACAATGGCGAAAACCAAATGGTTGAGAAGACCCGAGGTCGTTATCTTGTGAGA
 
. : . : . : . : . : . :
rJMFF030G20- AGAGGATGGAGGCGATGAAGTTGGAGATGCAGACGAGTCGCCACTGGCGCCTTTGTCCCC
JMFN011I17+ AGAGGATGGAGGCGATGAAGTTGGAGATGCAGACGAGTCGCCACTGGCGCCTTTGTCCCC
                      ____________________________________________________________
consensus AGAGGATGGAGGCGATGAAGTTGGAGATGCAGACGAGTCGCCACTGGCGCCTTTGTCCCC
 
. : . : . : . : . : . :
rJMFF030G20- AGCCGGGGCATCTGCAACGGGGGCGATATCGGGTGCGGGTGCAGGGGCGGGGGTGGGGGG
JMFN011I17+ AGCCGGGGCATCTGCAACGGGGGCGATATCGGGTGCGGGTGCAGGGGCGGGGGTG--GGG
                      ____________________________________________________________
consensus AGCCGGGGCATCTGCAACGGGGGCGATATCGGGTGCGGGTGCAGGGGCGGGGGTGGGGGG
 
. : . : . : . : . : . :
rJMFF030G20- GGAATGTCAGTCCCGAAGATGGCTTCGGGGAGGAGAACCCCGTCTACCTGATAAACAGCA
JMFN011I17+ GGAATGTCAGTCCCGAAGATGGCTTCGGGGAGGAGAACCCCGTCTACCTGATAAACAGCA
                      ____________________________________________________________
consensus GGAATGTCAGTCCCGAAGATGGCTTCGGGGAGGAGAACCCCGTCTACCTGATAAACAGCA
 
. : . : . : . : . : . :
rJMFF030G20- ACGGGGAAAGTTGCCCGCACTGCACTGCTGATTTTGGTGCTAGTCCACCCCGAGTTTAGG
JMFN011I17+ ACGGGGAAAGTTGCCCGCACTGCACTGCTGATTTTGGTGCTAGTCCACCCCGAGTTTAGG
                      ____________________________________________________________
consensus ACGGGGAAAGTTGCCCGCACTGCACTGCTGATTTTGGTGCTAGTCCACCCCGAGTTTAGG
 
. : . : . : . : . : . :
rJMFF030G20- TGCACAGTCCCGGAGACGTCTGTGAAGTTCAAACCGTAAAGTTGCCCACCAGCAAAGGTA
JMFN011I17+ TGCACAGTCCCGGAGACGTCTGTGAAGTTCAAACCGTAAAGTTGCCCACCAGCAAAGGTA
                      ____________________________________________________________
consensus TGCACAGTCCCGGAGACGTCTGTGAAGTTCAAACCGTAAAGTTGCCCACCAGCAAAGGTA
 
. : . : . : . : . : . :
rJMFF030G20- GTTATAGGGCTGAATTGGCTGAGGTTCCTGAACTC
JMFN011I17+ GTTATAGGGCTGAATTGGCTGAGGTTCCTGAACTCCGCGAGGGTGTAGTAATGTGGCAGC
JMFF030G20+ GTGTAGTAATGTGGCAGC
                      ____________________________________________________________
consensus GTTATAGGGCTGAATTGGCTGAGGTTCCTGAACTCCGCGAGGGTGTAGTAATGTGGCAGC
 
. : . : . : . : . : . :
JMFN011I17+ GCGTGGAAAAGGCAGAGCGACTTGAGCTGGTTAGCAGTGAGGTTGGAGAGCGA
JMFF030G20+ GCGTGGAAAAGGCAGAGCGACTTGAGCTGGTTAGCAGTGAGGTTGGAGAGCGAGACCTTC
                      ____________________________________________________________
consensus GCGTGGAAAAGGCAGAGCGACTTGAGCTGGTTAGCAGTGAGGTTGGAGAGCGAGACCTTC
 
. : . : . : . : . : . :
JMFF030G20+ TTCAGCTTCGAGAACGCTTGGTCTTTGGGCACAAAGAGCGTGATCCCTTCCTCCGTATCG
                      ____________________________________________________________
consensus TTCAGCTTCGAGAACGCTTGGTCTTTGGGCACAAAGAGCGTGATCCCTTCCTCCGTATCG
 
. : . : . : . : . : . :
JMFF030G20+ TTGGCTTGGTTTTGGAAAGTTTCTATGACTTTGGTGGATTCGAGGTAGTTAAGGAAGGTG
                      ____________________________________________________________
consensus TTGGCTTGGTTTTGGAAAGTTTCTATGACTTTGGTGGATTCGAGGTAGTTAAGGAAGGTG
 
. : . : . : . : . : . :
JMFF030G20+ TGGAATGGGCCAGCAACTGTGAGTAAGTCTGCGAGGTTCACACGTTCTGGGGCGGGTGCA
                      ____________________________________________________________
consensus TGGAATGGGCCAGCAACTGTGAGTAAGTCTGCGAGGTTCACACGTTCTGGGGCGGGTGCA
 
. : . : . : . : . : . :
JMFF030G20+ GGTGCAGGTGCTGGAGGTAGGCTCGGTGGTTTGGCAATGCCCTTTGCATTAACAACGACC
                      ____________________________________________________________
consensus GGTGCAGGTGCTGGAGGTAGGCTCGGTGGTTTGGCAATGCCCTTTGCATTAACAACGACC
 
. : . : . : . : . : . :
JMFF030G20+ CCGGCTGAAGAATAACATATCAGCAGACTAACCAGCATCAACACAGCCCTGCCACAATCC
                      ____________________________________________________________
consensus CCGGCTGAAGAATAACATATCAGCAGACTAACCAGCATCAACACAGCCCTGCCACAATCC
 
. : . : . : . : . : . :
JMFF030G20+ ATCTGGAGAGACCCAAGGAGAGTATGTAGCAGAGAAGAGAGAGAAGTTTGATTTGGAGAT
                      ____________________________________________________________
consensus ATCTGGAGAGACCCAAGGAGAGTATGTAGCAGAGAAGAGAGAGAAGTTTGATTTGGAGAT