Contig 000171:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030F20Sequence409000171 (4)ref|XP_009631202.1|7e-30PREDICTED: UPF0369 protein C6orf57 homolog [Nicotiana tomentosiformis] ref|XP_00601000171 (4)ref|XP_009631202.1|5e-29PREDICTED: UPF0369 protein C6orf57 homolog [Nicotiana tomentosiformis] ref|XP_00
JMFN012I09Sequence593000171 (4)ref|XP_009631202.1|6e-29PREDICTED: UPF0369 protein C6orf57 homolog [Nicotiana tomentosiformis] ref|XP_00
JMFN028P18Sequence509000171 (4)ref|XP_009790244.1|2e-20PREDICTED: UPF0369 protein [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN028P18+                                                 AGTAATAAACAAAGGACTAGTT
JMFN012I09+                                                 AGTAATAAACAAAGGACTAGTT
                      ____________________________________________________________
consensus                                                   AGTAATAAACAAAGGACTAGTT
 
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JMFN028P18+           TCAAACTAATGAAATTGTTTAAGAGGGCTTACATCATAGACATTTTAACAGTTCTATATA
JMFN012I09+           TCAAACTAATGAAATTGTTTAAGAGGGCTTACATCATAGACATTTTAACAGTTCTATATA
rJMFF030F20-             AACTAATGAAATTGTTTAAGAGGGCTTACATCATAGACATTTTAACAGTTCTATATA
                      ____________________________________________________________
consensus             TCAAACTAATGAAATTGTTTAAGAGGGCTTACATCATAGACATTTTAACAGTTCTATATA
 
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JMFN028P18+           GCATTAATTGGCAAATTAAATTATGGGAGACAGTATTGACTCGGTAAGACAACATTGTTT
JMFN012I09+           GCATTAATTGGCAAATTAAATTATGGGAGACAGTATTGACTCGGTAAGACAACATTGTTT
rJMFF030F20-          GCATTAATTGGCAAATTAAATTATGGGAGACAGTATTGACTCGGTAAGACAACATTGTTT
                      ____________________________________________________________
consensus             GCATTAATTGGCAAATTAAATTATGGGAGACAGTATTGACTCGGTAAGACAACATTGTTT
 
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JMFN028P18+           ACTCAGTAAGCAGGATTTGTGTCCGAGTTTTCAAACTTATCCTTTCTTTCAAAATACCTA
JMFN012I09+           ACTCAGTAAGCAGGATTTGTGTCCGAGTTTTCAAACTTATCCTTTCTTTCAAAATACCTA
rJMFF030F20-          ACTCAGTAAGCAGGATTTGTGTCCGAGTTTTCAAACTTATCCTTTCTTTCAAAATACCTA
                      ____________________________________________________________
consensus             ACTCAGTAAGCAGGATTTGTGTCCGAGTTTTCAAACTTATCCTTTCTTTCAAAATACCTA
 
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JMFN028P18+           ACCTTTCTTATTGGAGATTCATAAAGGCGAAAGCTATGAAACTTATTTCAGAAATCGGAG
JMFN012I09+           ACCTTTCTTATTGGAGATTCATAAAGGCGAAAGCTATGAAACTTATTTCAGAAATCGGAG
rJMFF030F20-          ACCTTTCTTATTGGAGATTCATAAAGGCGAAAGCTATGAAACTTATTTCAGAAATCGGAG
JMFF030F20+                      TGGAGATTCATAAAGGCGAAAGCTATGAAACTTATTTCAGAAATCGGAG
                      ____________________________________________________________
consensus             ACCTTTCTTATTGGAGATTCATAAAGGCGAAAGCTATGAAACTTATTTCAGAAATCGGAG
 
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JMFN028P18+           CAGCGGCCGCGTTGCTCCCAATCTCCATAGCGAGTTGGCTCCGGACCTTTGGGGCCTCCG
JMFN012I09+           CAGCGGCCGCGTTGCTCCCAATCTCCATAGCGAGTTGGCTCCGGACCTTTGGGGCCTCCG
rJMFF030F20-          CAGCGGCCGCGTTGCTCCCAATCTCCATAGCGAGTTGGCTCCGGACCTTTGGGGCCTCCG
JMFF030F20+           CAGCGGCCGCGTTGCTCCCAATCTCCATAGCGAGTTGGCTCCGGACCTTTGGGGCCTCCG
                      ____________________________________________________________
consensus             CAGCGGCCGCGTTGCTCCCAATCTCCATAGCGAGTTGGCTCCGGACCTTTGGGGCCTCCG
 
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JMFN028P18+           ATTTCTCCGGTTTCTTTGTTCACGAAATCGCCGTGTTCTTCTTCTTCACTCTGAGATACC
JMFN012I09+           ATTTCTCCGGTTTCTTTGTTCACGAAATCGCCGTGTTCTTCTTCTTCACTCTGAGATACC
rJMFF030F20-          ATTTCTCCGGTTTCTTTGTTCACGAAATCGCCGTGTTCTTCTTCTTCACTCTGAGATACC
JMFF030F20+           ATTTCTCCGGTTTCTTTGTTCACGAAATCGCCGTGTTCTTCTTCTTCACTCTGAGATACC
                      ____________________________________________________________
consensus             ATTTCTCCGGTTTCTTTGTTCACGAAATCGCCGTGTTCTTCTTCTTCACTCTGAGATACC
 
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JMFN028P18+           GGATCGGACATAGTCTCGTCTCCGCTGCGGACCTTATCCTTCTCCTCTGAGACTGGCGCC
JMFN012I09+           GGATCGGACATAGTCTCGTCTCCGCTGCGGACCTTATCCTTCTCCTCTGAGACTGGCGCC
rJMFF030F20-          GGATCGGACATAGTCTCGTCTCCGCTGCGGACCTTATCCTTCTCCTCTGAGACTGGCGCC
JMFF030F20+           GGATCGGACATAGTCTCGTCTCCGCTGCGGACCTTATCCTTCTCCTCTGAGACTGGCGCC
                      ____________________________________________________________
consensus             GGATCGGACATAGTCTCGTCTCCGCTGCGGACCTTATCCTTCTCCTCTGAGACTGGCGCC
 
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JMFN028P18+           GCGTGCTCCAGAGGATTCTCTTTGTGGACTTGAAATCTCTGAGCCGATGAGCAAATGAGT
JMFN012I09+           GCGTGCTCCAGAGGATTCTCTTTGTGGACTTGAAATCTCTGAGCCGATGAGCAAATGAGT
rJMFF030F20-          GCGTGCTCCAGAGGATTCTCTTTGTGGACTTGAAATCTCTGAGCCGATGAGCAAATGAGT
JMFF030F20+           GCGTGCTCCAGAGGATTCTCTTTGTGGACTTGAAATCTCTGAGCCGATGAGCAAATGAGT
                      ____________________________________________________________
consensus             GCGTGCTCCAGAGGATTCTCTTTGTGGACTTGAAATCTCTGAGCCGATGAGCAAATGAGT
 
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JMFN028P18+           CGACTCG                                                     
JMFN012I09+           CGACTCGCTGAATACTCGGACATACCTGAACTGAGCTTAGGCTGCGCGATCATCGACGTA
rJMFF030F20-          CGACTCGCTGAATACTCGGACATACCTGAACTGAGCTTAGGCTGCGCGATCATCGACGTA
JMFF030F20+           CGACTCGCTGAATACTCGGACATACCTGAACTGAGCTTAGGCTGCGCGATCATCGACGTA
                      ____________________________________________________________
consensus             CGACTCGCTGAATACTCGGACATACCTGAACTGAGCTTAGGCTGCGCGATCATCGACGTA
 
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JMFN012I09+           AACAGACGGCACAGATGCTTCGCCATGTCTT                             
rJMFF030F20-          AACAGACGGCACAGATGCTTCGCCATGTCTTCTTGATCTCCTTCGTCTTCCTTAGTCAAC
JMFF030F20+           AACAGACGGCACAGATGCTTCGCCATGTCTTCTTGATCTCCTTCGTCTTCCTTAGTCAAC
                      ____________________________________________________________
consensus             AACAGACGGCACAGATGCTTCGCCATGTCTTCTTGATCTCCTTCGTCTTCCTTAGTCAAC