Contig 000161:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028I08Sequence545000161 (5)ref|XP_004232317.1|186PREDICTED: uncharacterized protein LOC101257032 [Solanum lycopersicum]521000161 (5)ref|XP_004232317.1|186PREDICTED: uncharacterized protein LOC101257032 [Solanum lycopersicum]
JMSF008B02Sequence282004976 (2)685000161 (5)ref|XP_009631034.1|183PREDICTED: uncharacterized protein LOC104120867 [Nicotiana tomentosiformis]
JMSF035H18Sequence631022177688000161 (5)ref|XP_004232317.1|187PREDICTED: uncharacterized protein LOC101257032 [Solanum lycopersicum]
JMSF051F12Sequence679004976 (2)729000161 (5)ref|XP_009631034.1|183PREDICTED: uncharacterized protein LOC104120867 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF051F12+                                                     GCATACATATTAATCAT
                      ____________________________________________________________
consensus                                                        GCATACATATTAATCAT
 
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rJMSF051F12+          TNGTCTTATGAATGTGTCATTAATTGCTGTTTCTTTTATNATAAACAGTTGAAGCTTGAC
rJMSF008B02+                                                            GAAGCTTGAC
                      ____________________________________________________________
consensus             TNGTCTTATGAATGTGTCATTAATTGCTGTTTCTTTTATNATAAACAGTTGAAGCTTGAC
 
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rJMSF051F12+          GATTTCTCAAATAGGAAGAGCCCATGGAGGGGCAATTCTTGATTTTGTTAAAGTACGCAA
rJMSF008B02+          GATTTCTCAAATAGGAAGAGCCCATGGAGGGGCAATTCTTGATTTTGTTAAAGTACGCAA
                      ____________________________________________________________
consensus             GATTTCTCAAATAGGAAGAGCCCATGGAGGGGCAATTCTTGATTTTGTTAAAGTACGCAA
 
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rJMSF051F12+          GTTTCCTGCTAAAACCGGCTATTTAGCACCAAGGTTGTGCTTGACCGTCGCAAATGGTGG
rJMSF008B02+          GTTTCCTGCTAAAACCGGCTATTTAGCACCAAGGTTGTGCTTGACCGTCGCAAATGGTGG
                      ____________________________________________________________
consensus             GTTTCCTGCTAAAACCGGCTATTTAGCACCAAGGTTGTGCTTGACCGTCGCAAATGGTGG
 
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rJMSF051F12+          CTTTAAAGGGGAAAGGAATTGTATTAAAGTTGGTGATGGTGTGATAATTGTTGACCATGG
rJMSF008B02+          CTTTAAAGGGGAAAGGAATTGTATTAAAGTTGGTGATGGTGTGATAATTGTTGACCATGG
                      ____________________________________________________________
consensus             CTTTAAAGGGGAAAGGAATTGTATTAAAGTTGGTGATGGTGTGATAATTGTTGACCATGG
 
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rJMSF051F12+          ATCGCGTCGAAAAGAGTCCAATCTTATGCTAAGAGCTGGCAGAGCCTTCTATCAAAGATG
rJMSF008B02+          ATCGCGTCGAAAAGAGTCCAATCTTATGCTAAGAGCTGGCAGAGCCTTCTATCAAAGATG
rJMFF028I08+                                          GAGCTGGCAGAGCCTTCTATCAAAGATG
rJMSF035H18+                                             CTGGCAGAGCCTTCTATCAAAGATG
JMFF028I08-                                           GAGCTGGCAGAGCCTTCTATCAAAGATG
                      ____________________________________________________________
consensus             ATCGCGTCGAAAAGAGTCCAATCTTATGCTAAGAGCTGGCAGAGCCTTCTATCAAAGATG
 
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rJMSF051F12+          CATTTAATTCCTGTGTTCAACAGGGAGCACGTCGAATTATAGTTTCCCCATTCTTCCTTT
rJMSF008B02+          CATTTAATTCCTGTGTTCAACAGGGAGCACGTCGAATTATAGTTTCCCCATTCTTCCTTT
rJMFF028I08+          CATTTAATTCCTGTGTTCAACAGGGAGCACGTCGAATTATAGTTTCCCCATTCTTCCTTT
rJMSF035H18+          CATTTAATGCTTGTGTTCAACAGGGAGCACGTCGAATTATAGTTTCCCCGTTCTTCCTTT
JMFF028I08-           CATTTAATTCCTGTGTTCAACAGGGAGCACGTCGAATTATAGTTTCCCCATTCTTCCTTT
                      ____________________________________________________________
consensus             CATTTAATTCCTGTGTTCAACAGGGAGCACGTCGAATTATAGTTTCCCCATTCTTCCTTT
 
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rJMSF051F12+          TTCCTGGACGACACTGGCAACAGGATATTCCTTCACTAACCGCCGAAGCTGCCAAGCTGC
rJMSF008B02+          TTCCTGGACGACACTGGCAACAGGATATTCCTTCACTAACCGCCGAAGCTGCCAAGCTGC
rJMFF028I08+          TTCCTGGACGACACTGGCAACAGGATATTCCTTCACTAACCGCCGAAGCTGCCAAGCTGC
rJMSF035H18+          TTCCTGGACGACACTGGCAACAGGATATTCCTTCACTAACTGCTGAAGCTGCCAAGCTGC
JMFF028I08-           TTCCTGGACGACACTGGCAACAGGATATTCCTTCACTAACCGCCGAAGCTGCCAAGCTGC
                      ____________________________________________________________
consensus             TTCCTGGACGACACTGGCAACAGGATATTCCTTCACTAACCGCCGAAGCTGCCAAGCTGC
 
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rJMSF051F12+          ATCCTGGGATACCATTCATTATTACTGCACCTCTTGGTGTCCATGAATTGCTTGTGGACG
rJMSF008B02+          ATCCTGGGATACCATTCATTATTACTGCACCTCTTGGTGTCCATGAATTGCTTGTGGACG
rJMFF028I08+          ATCCTGGGATACCATTCATTATTACTGCACCTCTTGGTGTCCATGAATTGCTTGTGGACG
rJMSF035H18+          ATCCTGGGATACCATTCATTATTACTGCACCTCTTGGTGTGCATGAATTGCTTGTGGACG
JMFF028I08-           ATCCTGGGATACCATTCATTATTACTGCACCTCTTGGTGTCCATGAATTGCTTGTGGACG
                      ____________________________________________________________
consensus             ATCCTGGGATACCATTCATTATTACTGCACCTCTTGGTGTCCATGAATTGCTTGTGGACG
 
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rJMSF051F12+          TTATAAATGACAGACTTGACCATTGCTTAAGTCACATTGATGGGAATGCAGATGAGTGTT
rJMSF008B02+          TTATAAATGACAGACTTGACCATTGCTTAAGTCACATTGATGGGAATGCAGATGAGTGTT
rJMFF028I08+          TTATAAATGACAGACTTGACCATTGCTTAAGTCACATTGATGGGAATGCAGATGAGTGTT
rJMSF035H18+          TTATAAATGACAGAATTGATCATTGCTTAAGTCACATTGATGGGAATGCAGATGAGTGTT
JMFF028I08-           TTATAAATGACAGACTTGACCATTGCTTAAGTCACATTGATGGGAATGCAGATGAGTGTT
                      ____________________________________________________________
consensus             TTATAAATGACAGACTTGACCATTGCTTAAGTCACATTGATGGGAATGCAGATGAGTGTT
 
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rJMSF051F12+          CAGTTTGTGCTGGTACAGGAAAATGTCAACTTTATGAATAGCATACTTTGAATATCNGAG
rJMSF008B02+          CAGTTTGTGCTGGTACAGGAAAATGTCAACTTTATGAATAGCATACTTTGAATATCTGAG
rJMFF028I08+          CAGTTTGTGCTGGTACAGGAAAATGTCAACTTTATGAATAGCATACTTTGAATATCTGAG
rJMSF035H18+          CAGTTTGTGCTGGAACAGGAAAATGTCAACTTTATGAATAGCATACTTTGAATATCTGAG
JMFF028I08-           CAGTTTGTGCTGGTACAGGAAAATGTCAACTTTATGAATAGCATACTTTGAATATCTGAG
                      ____________________________________________________________
consensus             CAGTTTGTGCTGGTACAGGAAAATGTCAACTTTATGAATAGCATACTTTGAATATCTGAG
 
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rJMSF051F12+          GATTCCTTGACCTAGATATTNGAAGATGTATTATTCTNTTAACAATAAATACTAACATGG
rJMSF008B02+          GATTCCTTGACCTAGATATTNGAAGATGTATTATTCTNTTAACAATAAATACTAACATGG
rJMFF028I08+          GATTCCTTGACCTAGATATTTGAAGATGTATTATTCTTTTAACAATAAATACT-ACATGG
rJMSF035H18+          GATTCCTTGA                                                  
JMFF028I08-           GATTCCTTGACCTAGATATTTGAAGATGTATTATTCTTTTAACAATAAATACT-ACATGG
                      ____________________________________________________________
consensus             GATTCCTTGACCTAGATATTTGAAGATGTATTATTCTTTTAACAATAAATACT-ACATGG
 
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rJMSF051F12+          TCTGAATATANTTACTGCTTCAGCCTTGNGANTTTTTTAAATTTAAATTCTT        
rJMSF008B02+          TCTGAATATANTTACTGCTTCAGCCTTGNGATTTTTTNAAATTTAAATTCTT        
rJMFF028I08+          TCTGAATATATTTACTGCTTCAGCCTTGTGATTTTTTTAAATTTAAATTCTTCCTTGTGT
JMFF028I08-           TCTGAATATATTTACTGCTTCAGCCTTGTGATTTTTTTAAATTTAAATTCTTCCTTGTGT
                      ____________________________________________________________
consensus             TCTGAATATATTTACTGCTTCAGCCTTGTGATTTTTTTAAATTTAAATTCTTCCTTGTGT
 
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rJMFF028I08+          CACCGACTTCTTGTAATATTGATCAA                                  
JMFF028I08-           CACCGACTTCTTGTAATATTGATCAATGAAGAAAATTTGCAGTAGTATTTAAAACTTGTA
                      ____________________________________________________________
consensus             CACCGACTTCTTGTAATATTGATCAATGAAGAAAATTTGCAGTAGTATTTAAAACTTGTA