| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017C06 | Sequence | 477 | 000156 (5) | ref|NP_001240863.1| | 3e-26 | protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI | 783 | 005394 (7) | gb|ABK93253.1| | 1e-53 | unknown [Populus trichocarpa] |
| JMFF017N23 | Sequence | 561 | 000156 (5) | ref|NP_001240863.1| | 7e-43 | protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI | 780 | 005394 (7) | gb|ABK93253.1| | 5e-52 | unknown [Populus trichocarpa] |
| JMFF021O05 | Sequence | 563 | 000156 (5) | ref|NP_001240863.1| | 2e-43 | protein kinase APK1A, chloroplastic-like [Glycine max] ref|XP_006593429.1| PREDI | 759 | 005394 (7) | gb|ABK93253.1| | 5e-48 | unknown [Populus trichocarpa] |
| JMFF028C15 | Sequence | 418 | 000156 (5) | 694 | 005394 (7) | gb|ABK93253.1| | 1e-57 | unknown [Populus trichocarpa] | |||
| JMFS114C11 | Sequence | 555 | 000156 (5) | ref|XP_011035309.1| | 6e-56 | PREDICTED: protein kinase APK1A, chloroplastic-like isoform X1 [Populus euphrat | |||||
This contig is upended
. : . : . : . : . : . :
JMFS114C11+ ACAATAACCAATCAGTTTTACGAGATTAGGATGCGAGAACTGCCCCAAATA
____________________________________________________________
consensus ACAATAACCAATCAGTTTTACGAGATTAGGATGCGAGAACTGCCCCAAATA
. : . : . : . : . : . :
JMFS114C11+ GTTCAGTTCTGCCAGCCATTCGCTATGGCCCTGAAGGCCGCCATGGTTTAGCCTCTTCAC
____________________________________________________________
consensus GTTCAGTTCTGCCAGCCATTCGCTATGGCCCTGAAGGCCGCCATGGTTTAGCCTCTTCAC
. : . : . : . : . : . :
JMFS114C11+ AGCAATCACTAAGCCAGTTCCCGGCTTGGTTGGGCTAAGTGAGTTCTTGTCAATCCAACC
____________________________________________________________
consensus AGCAATCACTAAGCCAGTTCCCGGCTTGGTTGGGCTAAGTGAGTTCTTGTCAATCCAACC
. : . : . : . : . : . :
JMFS114C11+ TTTGAACACAGGGCCAAAGCCACCTTCTCCAAGCACACTGTCAAGACGAAAGTCTCTGGT
JMFF021O05+ CCACCTTCTCCAAGCACACTGTCAAGACGAAAGTCTCTGGT
JMFF017C06+ TGAACACAGGGCCAAAGCCACCTTCTCCAAGCACACTGTCAAGACGAAAGTCTCTGGT
JMFF017N23+ CCACCTTCTCCAAGCACACTGTCAAGACGAAAGTCTCTGGT
____________________________________________________________
consensus TTTGAACACAGGGCCAAAGCCACCTTCTCCAAGCACACTGTCAAGACGAAAGTCTCTGGT
. : . : . : . : . : . :
JMFS114C11+ GGCCATTTTGAGATCAGCAAAAGTAAAGCTTTTCAAATTGGGGGACTGCAAGATCTCACC
JMFF021O05+ GGCCATTTTGAGATCAGCAAAAGTAAAGCTTTTCAAATTGGGGGACTGCAAGATCTCACC
JMFF017C06+ GGCCATTTTGAGATCAGCAAAAGTAAAGCTTTTCAAATTGGGGGACTGCAAGATCTCACC
JMFF017N23+ GGCCATTTTGAGATCAGCAAAAGTAAAGCTTTTCAAATTGGGGGACTGCAAGATCTCACC
____________________________________________________________
consensus GGCCATTTTGAGATCAGCAAAAGTAAAGCTTTTCAAATTGGGGGACTGCAAGATCTCACC
. : . : . : . : . : . :
JMFS114C11+ CTCTGATTTAGGGGTTTGTGGGGGAGAGTTCTTGCTGTCTGATTTGCCCAGGCCACTCCC
JMFF021O05+ CTCTGATTTAGGGGTTTGTGGGGGAGAGTTCTTGCTGTCTGATTTGCCCAGGCCACTCCC
JMFF017C06+ CTCTGATTTAGGGGTTTGTGGGGGAGAGTTCTTGCTGTCTGATTTGCCCAGGCCACTCCC
JMFF017N23+ CTCTGATTTAGGGGTTTGTGGGGGAGAGTTCTTGCTGTCTGATTTGCCCAGGCCACTCCC
____________________________________________________________
consensus CTCTGATTTAGGGGTTTGTGGGGGAGAGTTCTTGCTGTCTGATTTGCCCAGGCCACTCCC
. : . : . : . : . : . :
JMFS114C11+ ATCTGTGCTAATAACACATTTTGAACTTAAACCTGG
JMFF021O05+ ATCTGTGCTAATAACACATTTTGAACTTAAACCTGGATGTGGGCTTTCAGCTTTGATTCT
JMFF017C06+ ATCTGTGCTAATAACACATTTTGAACTTAAACCTGGATGTGGGCTTTCAGCTTTGATTCT
JMFF017N23+ ATCTGTGCTAATAACACATTTTGAACTTAAACCTGGATGTGGGCTTTCAGCTTTGATTCT
____________________________________________________________
consensus ATCTGTGCTAATAACACATTTTGAACTTAAACCTGGATGTGGGCTTTCAGCTTTGATTCT
. : . : . : . : . : . :
JMFF021O05+ GACACTCAAGCAAATCCCCATCATGAGAGACCACCAGCCCTTAGTCCCAAACTTCTATTC
JMFF017C06+ GACACTCAAGCAAATCCCCATCATGAGAGACCACCAGCCCTTAGTCCCAAACTTCTATTC
JMFF017N23+ GACACTCAAGCAAATCCCCATCATGAGAGACCACCAGCCCTTAGTCCCAAACTTCTATTC
____________________________________________________________
consensus GACACTCAAGCAAATCCCCATCATGAGAGACCACCAGCCCTTAGTCCCAAACTTCTATTC
. : . : . : . : . : . :
JMFF021O05+ TCTCCAAGTGAAGAGAAAAGGAGTAGGTGGCCGATAGCAGAGCTTTGGAGGGAGATGTGT
JMFF017C06+ TCTCCAAGTGAAGAGAAAAGGAGTAGGTGGCCGATAGCAGAGCTTTGGAGGGAGATGTGT
JMFF017N23+ TCTCCAAGTGAAGAGAAAAGGAGTAGGTGGCCGATAGCAGAGCTTTGGAGGGAGATGTGT
JMFF028C15+ CTCCAAGTGAAGAGAAAAGGAGTAGGTGGCCGATAGCAGAGCTTTGGAGGGAGATGTGT
____________________________________________________________
consensus TCTCCAAGTGAAGAGAAAAGGAGTAGGTGGCCGATAGCAGAGCTTTGGAGGGAGATGTGT
. : . : . : . : . : . :
JMFF021O05+ GAATGCGAAGGCGGAGAGCTAAGGTTTCTTCCTAGTTGCTGTCCGTATATCACGGATGAT
JMFF017C06+ GAATGCGAAGGCGGAGAGCTAAGGTTTCTTCCTAGTTGCTGTCCGTATATCACGGATGAT
JMFF017N23+ GAATGCGAAGGCGGAGAGCTAAGGTTTCTTCCTAGTTGCTGTCCGTATATCACGGATGAT
JMFF028C15+ GAATGCGAAGGCGGAGAGCTAAGGTTTCTTCCTAATTGCTGTCCGTATATCACGGATGAT
____________________________________________________________
consensus GAATGCGAAGGCGGAGAGCTAAGGTTTCTTCCTAGTTGCTGTCCGTATATCACGGATGAT
. : . : . : . : . : . :
JMFF021O05+ TGGATGAAGGTTAAAAGATGTTGAGAGCGACAGAAGAGGTTAAAAGAAGCAGCATAAA
JMFF017C06+ TGGATGAAGGTTAAAAGATGTTGAGAGCGACAGAAGAGGTTAAAAGAAGCAGCATAAA
JMFF017N23+ TGGATGAAGGTTAAAAGATGTTGAGAGCGACAGAAGAGGTTAAAAGAAGCAGCATAAA
JMFF028C15+ TGGATGAAGGTTAAAAGATGTTGAGAGCGACAGAAGAGGTTAAAAGAAGCAGCATAAAAT
____________________________________________________________
consensus TGGATGAAGGTTAAAAGATGTTGAGAGCGACAGAAGAGGTTAAAAGAAGCAGCATAAAAT