Contig 000152:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004G05Sequence501000152 (15)ref|XP_003607260.1|2e-19hypothetical protein MTR_4g075160 [Medicago truncatula]510000152 (15)ref|XP_009618837.1|2e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia
JMFF011G12Sequence536000152 (15)ref|XP_009618837.1|3e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia513000152 (15)ref|XP_009618837.1|3e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia
JMFF027K06Sequence521000152 (15)ref|XP_009618837.1|3e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia524000152 (15)ref|XP_009618837.1|3e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia
JMFF041K17Sequence480000152 (15)ref|XP_009618837.1|2e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia472000152 (15)ref|XP_009618837.1|3e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia
JMFF047B10Sequence577000152 (15)ref|XP_009618837.1|5e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia575000152 (15)ref|XP_009618837.1|4e-33PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia
JMFN002G08Sequence520000152 (15)ref|XP_009618837.1|2e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia
JMFN016J09Sequence506000152 (15)ref|XP_009618837.1|2e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia
JMFN019K14Sequence544000152 (15)ref|XP_009618837.1|2e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia
JMSF013N08Sequence470000152 (15)ref|XP_009618837.1|2e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia491000152 (15)ref|XP_009618837.1|2e-32PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Nicotia

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF047B10-                                                                 GCAAG
JMFN019K14-                                                                  GCAAG
JMFF047B10+                             GGAGGAAAAAGAATGATTCAAAAGTTCAAGTTCAGATGCAAG
                      ____________________________________________________________
consensus                               GGAGGAAAAAGAATGATTCAAAAGTTCAAGTTCAGATGCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF011G12+                    ACCTTTCTGTTATTCTCCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
rJMFF047B10-          TCATAATAAACCTTTCTGTTATTCTCCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
JMFN002G08+            CATAATAAACCTTTCTGTTATTCTCCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
JMFN019K14-           TCATAATAAACCTTTCTGTTATTCTCCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
JMFN016J09+                          CTGTTATTCTCCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
JMFF041K17+              TAATAAACCTTTCTGTTATTCTCCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
rJMFF041K17-             TAATAAACCTTTCTGTTATTCTCCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
JMFF047B10+           TCATAATAAACCTTTCTGTTATTCTCCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
rJMFF027K06-                                      ACTAGAATTAAGAAATCACAACAAAGTTGAAA
rJMFF011G12-                                      ACTAGAATTAAGAAATCACAACAAAGTTGAAA
rJMFF004G05-                                      ACTAGAATTAAGAAATCACAACAAAGTTGAAA
rJMSF013N08-                                                               GTTGAAA
JMFF004G05+                                    CCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
JMFF027K06+                             TTATTCTCCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
                      ____________________________________________________________
consensus             TCATAATAAACCTTTCTGTTATTCTCCAACTAGAATTAAGAAATCACAACAAAGTTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF011G12+           GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
rJMFF047B10-          GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
JMFN002G08+           GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
JMFN019K14-           GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
JMFN016J09+           GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
JMFF041K17+           GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
rJMFF041K17-          GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
JMFF047B10+           GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
rJMFF027K06-          GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
rJMFF011G12-          GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
rJMFF004G05-          GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
rJMSF013N08-          GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
JMFF004G05+           GTTTACAGCATCAAAATAGATTCAGTAACATNAAGTGCAGAATAAGTTGATCTTTTGGAT
JMSF013N08+             TTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
JMFF027K06+           GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
                      ____________________________________________________________
consensus             GTTTACAGCATCAAAATAGATTCAGTAACATTAAGTGCAGAATAAGTTGATCTTTTGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF011G12+           CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
rJMFF047B10-          CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
JMFN002G08+           CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
JMFN019K14-           CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
JMFN016J09+           CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
JMFF041K17+           CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
rJMFF041K17-          CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
JMFF047B10+           CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
rJMFF027K06-          CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
rJMFF011G12-          CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
rJMFF004G05-          CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
rJMSF013N08-          CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
JMFF004G05+           CACATTCGTGACAATCCCGTTTNTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
JMSF013N08+           CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
JMFF027K06+           CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
                      ____________________________________________________________
consensus             CACATTCGTGACAATCCCGTTTCTAGTCAATTATTGAACAGAAATCAATAGAACTCTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF011G12+           AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
rJMFF047B10-          AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
JMFN002G08+           AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
JMFN019K14-           AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
JMFN016J09+           AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
JMFF041K17+           AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
rJMFF041K17-          AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
JMFF047B10+           AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
rJMFF027K06-          AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
rJMFF011G12-          AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
rJMFF004G05-          AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
rJMSF013N08-          AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
JMFF004G05+           AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
JMSF013N08+           AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
JMFF027K06+           AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
                      ____________________________________________________________
consensus             AAGACACTTTCATTCCCAGAATAAGCCAAAGTTCAGTAAGGTTATTCATATTGCCTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF011G12+           GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
rJMFF047B10-          GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
JMFN002G08+           GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
JMFN019K14-           GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
JMFN016J09+           GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
JMFF041K17+           GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
rJMFF041K17-          GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
JMFF047B10+           GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
rJMFF027K06-          GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
rJMFF011G12-          GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
rJMFF004G05-          GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
rJMSF013N08-          GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
JMFF004G05+           GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
JMSF013N08+           GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
JMFF027K06+           GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
                      ____________________________________________________________
consensus             GCTTTGAACCCGACATCTAATGATCATTCCCATGATCTCCATGACCTTCCCAAGGATGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF011G12+           TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
rJMFF047B10-          TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
JMFN002G08+           TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
JMFN019K14-           TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
JMFN016J09+           TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
JMFF041K17+           TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
rJMFF041K17-          TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
JMFF047B10+           TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
rJMFF027K06-          TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
rJMFF011G12-          TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
rJMFF004G05-          TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
rJMSF013N08-          TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
JMFF004G05+           TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
JMSF013N08+           TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
JMFF027K06+           TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
                      ____________________________________________________________
consensus             TCCATCCCAATACTACAGGTCCATCCTGTTTGGCTCGGTACAGAATCCAAAACCACATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF011G12+           CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
rJMFF047B10-          CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
JMFN002G08+           CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
JMFN019K14-           CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
JMFN016J09+           CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
JMFF041K17+           CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
rJMFF041K17-          CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
JMFF047B10+           CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
rJMFF027K06-          CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
rJMFF011G12-          CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
rJMFF004G05-          CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
rJMSF013N08-          CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
JMFF004G05+           CGGCACACAAGCCCTTGCCGGTGACTGGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
JMSF013N08+           CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
JMFF027K06+           CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
                      ____________________________________________________________
consensus             CGGCACACAAGCCCTTGCCGGTGAC-GGTGTGCCAGCGCTTGGGCTGATGGATCGTAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF011G12+           CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
rJMFF047B10-          CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
JMFN002G08+           CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
JMFN019K14-           CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
JMFN016J09+           CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
JMFF041K17+           CCTTCGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
rJMFF041K17-          CCTTCGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCT      
JMFF047B10+           CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
rJMFF027K06-          CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
rJMFF011G12-          CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
rJMFF004G05-          CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
rJMSF013N08-          CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
JMFF004G05+           CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
JMSF013N08+           CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
JMFF027K06+           CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
                      ____________________________________________________________
consensus             CCTTTGTAAGTTACGCCGTGGCCATGTCCGTCTCCCATCTCCGATCTCCGATCTCTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF011G12+           TCCCCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACCTCAGCGC         
rJMFF047B10-          TC-CCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACCTCAGCGCTACC     
JMFN002G08+           TCCCCACAACCGCAGATTACGCCGTGCTTCAC                            
JMFN019K14-           TCCCCACAACCGCAGATTACGCCG                                    
JMFN016J09+           TCCCCACAACCGCAGATTACGCCGTGCTTCAC                            
JMFF041K17+           TC                                                          
JMFF047B10+           TCCCCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACCTCAGCGCTACC     
rJMFF027K06-          TCCCCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACCTCAGCGCTACC     
rJMFF011G12-          TCCCCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACCTCAGCGC         
rJMFF004G05-          TCACCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACC                
rJMSF013N08-          TCCCCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACCTCAGCGC         
JMFF004G05+           TCACCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACC                
JMSF013N08+           TCCCCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACCTCAGCGC         
JMFF027K06+           TCCCCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACCTCAGCGCTACCAGAAG
                      ____________________________________________________________
consensus             TCCCCACAACCGCAGATTACGCCGTGCTTCACTGTTATACAACCTCAGCGCTACCAGAAG