Contig 000141:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022C12Sequence510000141 (3)ref|XP_008346527.1|1e-91PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B-like [Malu
JMFF026I07Sequence568000141 (3)ref|XP_008346527.1|9e-108PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B-like [Malu650015930ref|XP_009794951.1|5e-104PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B-like, part
JMSF004N13Sequence372000141 (3)ref|XP_011074603.1|6e-61PREDICTED: LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 13319001575 (28)

Alignment

This contig is upended


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JMFF026I07+                                           CTGAATTTGTGATACTGAGATGAAACCC
                      ____________________________________________________________
consensus                                             CTGAATTTGTGATACTGAGATGAAACCC
 
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JMFF022C12+                                         TATCGGTCATGCTATCAAGTGTACTCTTTC
JMFF026I07+           AATAATAGCTCGCATACACAGATGGATCAATATCGGTCATGCTATCAAGTGTACTCTTTC
                      ____________________________________________________________
consensus             AATAATAGCTCGCATACACAGATGGATCAATATCGGTCATGCTATCAAGTGTACTCTTTC
 
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JMFF022C12+           CCTCTTCCAAAAGATTCTTGCACCCTTTTTGATCCCCTTGTTCAAGTTTAAGTAATGCAA
JMFF026I07+           CCTCTTCCAAAAGATTCTTGCACCCTTTTTGATCCCCTTGTTCAAGTTTAAGTAATGCAA
                      ____________________________________________________________
consensus             CCTCTTCCAAAAGATTCTTGCACCCTTTTTGATCCCCTTGTTCAAGTTTAAGTAATGCAA
 
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JMFF022C12+           TTTGCATCTTAATGTAAAGGATTGGTTCCTCTATGCGCATTTCTTTAGTATTACGAAGTT
JMSF004N13+                                                          GTATTACGAAGTT
JMFF026I07+           TTTGCATCTTAATGTAAAGGATTGGTTCCTCTATGCGCATTTCTTTAGTATTACGAAGTT
                      ____________________________________________________________
consensus             TTTGCATCTTAATGTAAAGGATTGGTTCCTCTATGCGCATTTCTTTAGTATTACGAAGTT
 
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JMFF022C12+           TCTCGATCACACCTTCCAGGTAACTAATAGCAGCTTCTTTCTCTGAGTACTGCCGAGAAA
JMSF004N13+           TCTCGATCACACCTTCCAGGTAACTAATAGCAGCTTCTTTCTCTGAGTACTGCCGAGAAA
JMFF026I07+           TCTCGATCACACCTTCCAGGTAACTAATAGCAGCTTCTTTCTCTGAGTACTGCCGAGAAA
                      ____________________________________________________________
consensus             TCTCGATCACACCTTCCAGGTAACTAATAGCAGCTTCTTTCTCTGAGTACTGCCGAGAAA
 
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JMFF022C12+           CAATGACAGCAAAATGAGCAAGTTTGAGAAGATTGATCTTTGTCTCAAAGTCAGTGATGA
JMSF004N13+           CAATGACAGCAAAATGAGCAAGTTTGAGAAGATTGATCTTTGTCTCAAAGTCAGTGATGA
JMFF026I07+           CAATGACAGCAAAATGAGCAAGTTTGAGAAGATTGATCTTTGTCTCAAAGTCAGTGATGA
                      ____________________________________________________________
consensus             CAATGACAGCAAAATGAGCAAGTTTGAGAAGATTGATCTTTGTCTCAAAGTCAGTGATGA
 
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JMFF022C12+           AATTATGATACAACTGAATCAGTGCATCACCAGCCTGAAAAACAGAGAGAGAAACGAACT
JMSF004N13+           AATTATGATACAACTGAATCAGTGCATCACCAGCCTGAAAAACAGAGAGAGAAACGAACT
JMFF026I07+           AATTATGATACAACTGAATCAGTGCATCACCAGCCTGAAAAACAGAGAGAGAAACGAACT
                      ____________________________________________________________
consensus             AATTATGATACAACTGAATCAGTGCATCACCAGCCTGAAAAACAGAGAGAGAAACGAACT
 
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JMFF022C12+           CCTCGAGCTTGTGAGTGAGCTGGTGCCAGAGCTTCCGCTGGTACAGATCTGCGAGAGTAT
JMSF004N13+           CCTCGAGCTTGTGAGTGAGCTGGTGCCAGAGCTTCCGCTGGTACAGATCTGCGAGAGTAT
JMFF026I07+           CCTCGAGCTTGTGAGTGAGCTGGTGCCAGAGCTTCCGCTGGTACAGATCTGCGAGAGTAT
                      ____________________________________________________________
consensus             CCTCGAGCTTGTGAGTGAGCTGGTGCCAGAGCTTCCGCTGGTACAGATCTGCGAGAGTAT
 
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JMFF022C12+           TGTACCAATCGGAGAGCTCGGGGTGGGCATTGCGAAGCGAGTCCAGGTATTGCAGAGCCG
JMSF004N13+           TGTACCAATCGGAGAGCTCGGGGTGGGCATTGCGAAGCGAGTCCAGGTATTGCAGAGCCG
JMFF026I07+           TGTACCAATCGGAGAGCTCGGGGTGGGCATTGCGAAGCGAGTCCAGGTATTGCAGAGCCG
                      ____________________________________________________________
consensus             TGTACCAATCGGAGAGCTCGGGGTGGGCATTGCGAAGCGAGTCCAGGTATTGCAGAGCCG
 
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JMFF022C12+           CCATGGCTGACTCAGGCTGACCGACTAGCGATGAAGGAGAAGAAGAAAGACGACGAC   
JMSF004N13+           CCATGGCTGACTCAGGCTGACCGACTAGCGATGAAGGAGAAGAAGAAAGACGACGAC   
JMFF026I07+           CCATGGCTGACTCAGGCTGACCGACTAGCGATGAAGGAGAAGAAGAAAGACGACGACGTA
                      ____________________________________________________________
consensus             CCATGGCTGACTCAGGCTGACCGACTAGCGATGAAGGAGAAGAAGAAAGACGACGACGTA