Contig 000139:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026D09Sequence545000139 (5)560000139 (5)
JMFN020K22Sequence606000139 (5)
JMFN028C05Sequence534000139 (5)
JMFN035K19Sequence638000139 (5)

Alignment

This contig is upended


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rJMFF026D09-           ATATGTATGAATCCAAAAACAGTGATTAGGCAATGGTTCCCTATAATTCATCACACTCA
                      ____________________________________________________________
consensus              ATATGTATGAATCCAAAAACAGTGATTAGGCAATGGTTCCCTATAATTCATCACACTCA
 
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rJMFF026D09-          CAAGATGGCATTAAAATTAATCTATGCTTAAAATCAGTGAAGAGCTCAACAATCATTCTC
JMFN028C05+                                 TATGCTTAAAATCAGTGAAGAGCTCAACAATCATTCTC
JMFN020K22+                                 TATGCTTAAAATCAGTGAAGAGCTCAACAATCATTCTC
JMFN035K19+              GATGGCATTAAAATTAATCTATGCTTAAAATCAGTGAAGAGCTCAACAATCATTCTC
                      ____________________________________________________________
consensus             CAAGATGGCATTAAAATTAATCTATGCTTAAAATCAGTGAAGAGCTCAACAATCATTCTC
 
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rJMFF026D09-          CACCGTTAAATTTCGTCAGTGATGAAGCTGCTTCGCCACCAATACTGCCCGGATCTGAAC
JMFN028C05+           CACCGTTAAATTTCGTCAGTGATGAAGCTGCTTCGCCACCAATACTGCCCGGATCTGAAC
JMFN020K22+           CACCGTTAAATTTCGTCAGTGATGAAGCTGCTTCGCCACCAATACTGCCCGGATCTGAAC
JMFN035K19+           CACCGTTAAATTTCGTCAGTGATGAAGCTGCTTCGCCACCAATACTGCCCGGATCTGAAC
JMFF026D09+                                                                  TGAAC
                      ____________________________________________________________
consensus             CACCGTTAAATTTCGTCAGTGATGAAGCTGCTTCGCCACCAATACTGCCCGGATCTGAAC
 
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rJMFF026D09-          CGCAGAACCTAACCACGCAACCATGGCTACGTTTCTCAAGTCGGCCCCCTTGTGATGACC
JMFN028C05+           CGCAGAACCTAACCACGCAACCATGGCTACGTTTCTCAAGTCGGCCCCCTTGTGATGACC
JMFN020K22+           CGCAGAACCTAACCACGCAACCATGGCTACGTTTCTCAAGTCGGCCCCCTTGTGATGACC
JMFN035K19+           CGCAGAACCTAACCACGCAACCATGGCTACGTTTCTCAAGTCGGCCCCCTTGTGATGACC
JMFF026D09+           CGCAGAACCTAACCACGCAACCATGGCTACGTTTCTCAAGTCGGCCCCCTTGTGATGACC
                      ____________________________________________________________
consensus             CGCAGAACCTAACCACGCAACCATGGCTACGTTTCTCAAGTCGGCCCCCTTGTGATGACC
 
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rJMFF026D09-          GATGATGACCTCAGCCACCGCCGTTGCTCGCCGTCGACGGACTCCACCGCCCAGACGCCA
JMFN028C05+           GATGATGACCTCAGCCACCGCCGTTGCTCGCCGTCGACGGACTCCACCGCCCAGACGCCA
JMFN020K22+           GATGATGACCTCAGCCACCGCCGTTGCTCGCCGTCGACGGACTCCACCGCCCAGACGCCA
JMFN035K19+           GATGATGACCTCAGCCACCGCCGTTGCTCGCCGTCGACGGACTCCACCGCCCAGACGCCA
JMFF026D09+           GATGATGACCTCAGCCACCGCCGTTGCTCGCCGTCGACGGACTCCACCGCCCAGACGCCA
                      ____________________________________________________________
consensus             GATGATGACCTCAGCCACCGCCGTTGCTCGCCGTCGACGGACTCCACCGCCCAGACGCCA
 
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rJMFF026D09-          GAAAAGCATCAACGAGCTCCACCGCCGTCAGATTTGTTGCGCTGTCGTTGGATCCACTGC
JMFN028C05+           GAAAAGCATCAACGAGCTCCACCGCCGTCAGATTTGTTGCGCTGTCGTTGGATCCACTGC
JMFN020K22+           GAAAAGCATCAACGAGCTCCACCGCCGTCAGATTTGTTGCGCTGTCGTTGGATCCACTGC
JMFN035K19+           GAAAAGCATCAACGAGCTCCACCGCCGTCAGATTTGTTGCGCTGTCGTTGGATCCACTGC
JMFF026D09+           GAAAAGCATCAACGAGCTCCACCGCCGTCAGATTTGTTGCGCTGTCGTTGGATCCACTGC
                      ____________________________________________________________
consensus             GAAAAGCATCAACGAGCTCCACCGCCGTCAGATTTGTTGCGCTGTCGTTGGATCCACTGC
 
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rJMFF026D09-          CCCCTCGTGTCAGCTGCACGCCTCGCGCCTGCCGTTCGTCGAAAAACTAGAGGACGCCGC
JMFN028C05+           CCCCTCGTGTCA---GCACGCCTCGCGCCTGCCGTTCGTCGAAAAACTAGAGGACGCCGC
JMFN020K22+           CCCCTCGTGTCA---GCACGCCTCGCGCCTGCCGTTCGTCGAAAAACTAGAGGACGCCGC
JMFN035K19+           CCCCTCGTGTCAGCTGCACGCCTCGCGCCTGCCGTTCGTCGAAAAACTAGAGGACGCCGC
JMFF026D09+           CCCCTCGTGTCAGCTGCACGCCTCGCGCCTGCCGTTCGTCGAAAAACTAGAGGACGCCGC
                      ____________________________________________________________
consensus             CCCCTCGTGTCAGCTGCACGCCTCGCGCCTGCCGTTCGTCGAAAAACTAGAGGACGCCGC
 
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rJMFF026D09-          CGGTTGGAGAGAAGCTCGGACTACCATCGGATCTGCCTTGCTCGTTCGTCGCTGGAACCA
JMFN028C05+           CGGTTGGAGAGAAGCTCGGACTACCATCGGATCTGCCTTGCTCGTTCGTCGCTGGAACCA
JMFN020K22+           CGGTTGGAGAGAAGCTCGGACTACCATCGGATCTGCCTTGCTCGTTCGTCGCTGGAACCA
JMFN035K19+           CGGTTGGAGAGAAGCTCGGACTACCATCGGATCTGCCTTGCTCGTTCGTCGCTGGAACCA
JMFF026D09+           CGGTTGGAGAGAAGCTCGGACTACCATCGGATCTGCCTTGCTCGTTCGTCGCTGGAACCA
                      ____________________________________________________________
consensus             CGGTTGGAGAGAAGCTCGGACTACCATCGGATCTGCCTTGCTCGTTCGTCGCTGGAACCA
 
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rJMFF026D09-          CCGCCGGACATGGTCGCCTGCTTCGCTGCTGGTTACGTCAAGAGAGAGAGCAGGAGCAAC
JMFN028C05+           CCGCCGGACATGGTCGCCTGCTTCGCTGCTGGTTACGTCAAGAGAGAGAGCAGGAGCAAC
JMFN020K22+           CCGCCGGACATGGTCGCCTGCTTCGCTGCTGGTTACGTCAAGAGAGAGAGCAGGAGCAAC
JMFN035K19+           CCGCCGGACATGGTCGCCTGCTTCGCTGCTGGTTACGTCAAGAGAGAGAGCAGGAGCAAC
JMFF026D09+           CCGCCGGACATGGTCGCCTGCTTCGCTGCTGGTTACGTCAAGAGAGAGAGCAGGAGCAAC
                      ____________________________________________________________
consensus             CCGCCGGACATGGTCGCCTGCTTCGCTGCTGGTTACGTCAAGAGAGAGAGCAGGAGCAAC
 
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rJMFF026D09-          GAAAATGGAGGGAGGAAGGAA                                       
JMFN028C05+           GAAAATGGAGGGAGGAAGGAAGGGATAAAGAAGGTGGCTGGTGGTGGCTTCGCTGGACCT
JMFN020K22+           GAAAATGGAGGGAGGAAGGAAGGGATAAAGAAGGTGGCTGGTGGTGGCTTCGCTGGACCT
JMFN035K19+           GAAAATGGAGGGAGGAAGGAAGGGATAAAGAAGGTGGCTGGTGGTGGCTTCGCTGGACCT
JMFF026D09+           GAAAATGGAGGGAGGAAGGAAGGGATAAAGAAGGTGGCTGGTGGTGGCTTCGCTGGACCT
                      ____________________________________________________________
consensus             GAAAATGGAGGGAGGAAGGAAGGGATAAAGAAGGTGGCTGGTGGTGGCTTCGCTGGACCT
 
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JMFN028C05+           TCACCTCACCGCCACCATC                                         
JMFN020K22+           TCACCTCACCGCCACCATCTGTTCCGCCAGCCAAACGAGATGGAGAGGGAGAGAGAAGCT
JMFN035K19+           TCACCTCACCGCCACCATCTGTTCCGCCAGCCAAACGAGATGGAGAGGGAGAGAGAAGCT
JMFF026D09+           TCACCTCACCGCCACCATCTGTTCCGCCAGCCAAACGAGATGGAGAGGGAGAGAGAAGCT
                      ____________________________________________________________
consensus             TCACCTCACCGCCACCATCTGTTCCGCCAGCCAAACGAGATGGAGAGGGAGAGAGAAGCT
 
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JMFN020K22+           CTAGGTGGTTGGGGCTGTTAGGGT                                    
JMFN035K19+           CTAGGTGGTTGGGGCTGTTAGGGTTATTTGGGGATTTGGGG                   
JMFF026D09+           CTAGGTGGTTGGGGCTGTTAGGGTTATTTGGGGATTTGGGGATTTGGGGATGGTGAGAGG
                      ____________________________________________________________
consensus             CTAGGTGGTTGGGGCTGTTAGGGTTATTTGGGGATTTGGGGATTTGGGGATGGTGAGAGG