Contig 000138:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026C20Sequence585000138 (5)gb|KJB45970.1|8e-75hypothetical protein B456_007G341200 [Gossypium raimondii]752012319 (3)gb|AFK41701.1|2e-95unknown [Lotus japonicus]
JMFF034J20Sequence586000138 (5)gb|KJB45970.1|2e-75hypothetical protein B456_007G341200 [Gossypium raimondii]
JMSF006J22Sequence316000138 (5)gb|KCW45605.1|4e-31hypothetical protein EUGRSUZ_L00637 [Eucalyptus grandis]323012319 (3)
JMSF029N11Sequence660000138 (5)gb|KJB45970.1|7e-106hypothetical protein B456_007G341200 [Gossypium raimondii]711012319 (3)gb|AFK41701.1|2e-101unknown [Lotus japonicus]
JMSF034K22Sequence670000138 (5)gb|KJB45970.1|2e-110hypothetical protein B456_007G341200 [Gossypium raimondii]698000370 (11)gb|EYU17655.1|5e-61hypothetical protein MIMGU_mgv1a015081mg [Erythranthe guttata]

Alignment

This contig is upended


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JMSF034K22+                                                               CTCTCTTT
                      ____________________________________________________________
consensus                                                                 CTCTCTTT
 
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JMSF034K22+           ATGTGTCATTGGCAAAACAATTGCTTCAACAAGTTCTNGGATCTGTTTCTCTAGGCCTCC
JMSF029N11+                     GGCAAAACAATTGCTTCAACAAGTTCTNGGATCTGTTTCTCTAGGCCTCC
                      ____________________________________________________________
consensus             ATGTGTCATTGGCAAAACAATTGCTTCAACAAGTTCTNGGATCTGTTTCTCTAGGCCTCC
 
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JMSF034K22+           AATATCATTATAATCTTCAGTAGGCTTCTCATCAACTTCCATAGCCTTAACCCGGGAATC
JMSF029N11+           AATATCATTATAATCTTCAGTAGGCTTCTCATCAACTTCCATAGCCTTAACCCGGGAATC
                      ____________________________________________________________
consensus             AATATCATTATAATCTTCAGTAGGCTTCTCATCAACTTCCATAGCCTTAACCCGGGAATC
 
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JMSF034K22+           AAACTCCGATGGCAAAGTGTCCAAGATCAAATAACTGTCTTTATTCACTCCAACCAAATC
JMSF029N11+           AAACTCCGATGGCAAAGTGTCCAAGATCAAATAACTGTCTTTATTCACTCCAACCAAATC
JMFF034J20+                         AAGTGTCCAAGATCAAATAACTGTCTTTATTCACTCCAACCAAATC
JMFF026C20+                          AGTGTCCAAGATCAAATAACTGTCTTTATTCACTCCAACCAAATC
                      ____________________________________________________________
consensus             AAACTCCGATGGCAAAGTGTCCAAGATCAAATAACTGTCTTTATTCACTCCAACCAAATC
 
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JMSF034K22+           ACCAGGCTTTAACTTATCAGGATCAACAAGACCAACCACAGGCAAGAAGATTGTCTGACG
JMSF029N11+           ACCAGGCTTTAACTTATCAGGATCAACAAGACCAACCACAGGCAAGAAGATTGTCTGACG
JMFF034J20+           ACCAGGCTTTAACTTATCAGGATCAACAAGACCAACCACAGGCAAGAAGATTGTCTGACG
JMFF026C20+           ACCAGGCTTTAACTTATCAGGATCAACAAGACCAACCACAGGCAAGAAGATTGTCTGACG
                      ____________________________________________________________
consensus             ACCAGGCTTTAACTTATCAGGATCAACAAGACCAACCACAGGCAAGAAGATTGTCTGACG
 
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JMSF034K22+           AGTGGATGTTTTCAACACAACACATTTACCCTTTCTTTGTGAATCAAGATCAATATTTGC
JMSF029N11+           AGTGGATGTTTTCAACACAACACATTTACCCTTTCTTTGTGAATCAAGATCAATATTTGC
JMFF034J20+           AGTGGATGTTTTCAACACAACACATTTACCCTTTCTTTGTGAATCAAGATCAATATTTGC
JMFF026C20+           AGTGGATGTTTTCAACACAACACATTTACCCTTTCTTTGTGAATCAAGATCAATATTTGC
                      ____________________________________________________________
consensus             AGTGGATGTTTTCAACACAACACATTTACCCTTTCTTTGTGAATCAAGATCAATATTTGC
 
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JMSF034K22+           CCCATCTTCCTCGGCATCTTCCTCAGGGTTCATTTCTAAAATCTCCACGATGTTGCCGAC
JMSF029N11+           CCCATCTTCCTCGGCATCTTCCTCAGGGTTCATTTCTAAAATCTCCACGATGTTGCCGAC
JMSF006J22+                                 TCAGGGTTCATTTCTAAAATCTCCACGATGTTGCCGAC
JMFF034J20+           CCCATCTTCCTCGGCATCTTCCTCAGGGTTCATTTCTAAAATCTCCACGATGTTGCCGAC
JMFF026C20+           CCCATCTTCCTCGGCATCTTCCTCAGGGTTCATTTCTAAAATCTCCACGATGTTGCCGAC
                      ____________________________________________________________
consensus             CCCATCTTCCTCGGCATCTTCCTCAGGGTTCATTTCTAAAATCTCCACGATGTTGCCGAC
 
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JMSF034K22+           TAAGTAAGGAAGCTGTTTGTTGAGCTTAATCTTCTCTTGGTTCTCCTTTATCTTCTCCTT
JMSF029N11+           TAAGTAAGGAAGCTGTTTGTTGAGCTTAATCTTCTCTTGGTTCTCCTTTATCTTCTCCTT
JMSF006J22+           TAAGTAAGGAAGCTGTTTGTTGAGCTTAATCTTCTCTTGGTTCTCCTTTATCTTCTCCTT
JMFF034J20+           TAAGTAAGGAAGCTGTTTGTTGAGCTTAATCTTCTCTTGGTTCTCCTTTATCTTCTCCTT
JMFF026C20+           TAAGTAAGGAAGCTGTTTGTTGAGCTTAATCTTCTCTTGGTTCTCCTTTATCTTCTCCTT
                      ____________________________________________________________
consensus             TAAGTAAGGAAGCTGTTTGTTGAGCTTAATCTTCTCTTGGTTCTCCTTTATCTTCTCCTT
 
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JMSF034K22+           CAATGAATCCAAATCTAGATTCGTCCTCTGGAGCTCTTCCTTTAAGATTCGGATCTCGTT
JMSF029N11+           CAATGAATCCAAATCTAGATTCGTCCTCTGGAGCTCTTCCTTTAAGATTCGGATCTCGTT
JMSF006J22+           CAATGAATCCAAATCTAGATTCGTCCTCTGGAGCTCTTCCTTTAAGATTCGGATCTCGTT
JMFF034J20+           CAATGAATCCAAATCTAGATTCGTCCTCTGGAGCTCTTCCTTTAAGATTCGGATCTCGTT
JMFF026C20+           CAATGAATCCAAATCTAGATTCGTCCTCTGGAGCTCTTCCTTTAAGATTCGGATCTCGTT
                      ____________________________________________________________
consensus             CAATGAATCCAAATCTAGATTCGTCCTCTGGAGCTCTTCCTTTAAGATTCGGATCTCGTT
 
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JMSF034K22+           GTCAAGCAGACGCGATGCCCTGACGATGTCCTCTGTCGACATCGAACCCAGCTGATCGTC
JMSF029N11+           GTCAAGCAGACGCGATGCCCTGACGATGTCCTCTGTCGACATCGAACCCAGCTGATCGTC
JMSF006J22+           GTCAAGCAGACGCGATGCCCTGACGATGTCCTCTGTCGACATCGAACCCAGCTGATCGTC
JMFF034J20+           GTCAAGCAGACGCGATGCCCTGACGATGTCCTCTGTCGACATCGAACCCAGCTGATCGTC
JMFF026C20+           GTCAAGCAGACGCGATGCCCTGACGATGTCCTCTGCCGACATCGAACCCAGCTGATCGTC
                      ____________________________________________________________
consensus             GTCAAGCAGACGCGATGCCCTGACGATGTCCTCTGTCGACATCGAACCCAGCTGATCGTC
 
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JMSF034K22+           CTCGAAATTGCTGTCCTCAACCATTGCCGTTGCCATATCTCTACTCGCTGTTTACGTCAG
JMSF029N11+           CTCGAAATTGCTGTCCTCAACCATTGCCGTTGCCATATCTCTACTCGCTGTTTACGTCAG
JMSF006J22+           CTCGAAATTGCTGTCCTCAACCATTGCCGTTGCCATATCTCTACTCGCTGTTTACGTCAG
JMFF034J20+           CTCGAAATTGCTGTCCTCAACCATTGCCGTTGCCATATCTCTACTCGCTGTTTACGTCAG
JMFF026C20+           CTCGAAATTGCTGTCCTCAACCATTGCCGTTGCCATATCTCTACTCGCTGTTTACGTCAG
                      ____________________________________________________________
consensus             CTCGAAATTGCTGTCCTCAACCATTGCCGTTGCCATATCTCTACTCGCTGTTTACGTCAG
 
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JMSF034K22+           GTTTTCACAGAGAGAGAAAGAGAGGAGAGAAACGAATAGTTATAGGGAAGACGAGAAA  
JMSF029N11+           GTTTTCACAGAGAGAGAAAGAGAGGAGAGAAACGAATAGTTATAGGGAAGACGAGAAA  
JMSF006J22+           GTTTTCACAGAGAGAGAAAGAGAGGAGAGAAACGAAT                       
JMFF034J20+           GTTTTCACAGAGAGAGAAAGAGAGGAGAGAAACGAATAGTTATAGGGAAGACGAGAAATT
JMFF026C20+           GTTTTCACAGAGAGAGAAAGAGAGGAGAGAAACGAATAGTTATAGGGAAGACGAGAAATT
                      ____________________________________________________________
consensus             GTTTTCACAGAGAGAGAAAGAGAGGAGAGAAACGAATAGTTATAGGGAAGACGAGAAATT
 
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JMFF034J20+           CGAGTTTAGCGGTCTTGCTCTCCAAGCTAACGTAATGGGCCTGATTTTGGCGTTCCTTTC
JMFF026C20+           CGAGTTTAGCGGTCTTGCTCTCCAAGCTAACGTAATGGGCCTGATTTTGGCGTTCTTTTC
                      ____________________________________________________________
consensus             CGAGTTTAGCGGTCTTGCTCTCCAAGCTAACGTAATGGGCCTGATTTTGGCGTTCTTTTC