Contig 000130:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF002D05-                             GAATCAANAGACTACATACCAAACAAGAAGAAAAGACCCAA
rJMSF001D05-               GTGCATTACAACCAGAATCAAAAGACTACATACCAAACAAGAAGAAAAGACCCAA
                      ____________________________________________________________
consensus                  GTGCATTACAACCAGAATCAAAAGACTACATACCAAACAAGAAGAAAAGACCCAA
 
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rJMSF002D05-          GAAAAAAGGTGAANATGAAAAGCAAAGAGGAGAAAGTGGAAATCACAATCTTGATTTGCA
rJMSF001D05-          GAAAAAAGGTGAAAATGAAAAGCAAAAAGGAGAAAGTGGAAATCACAATCTTGATTTGCA
                      ____________________________________________________________
consensus             GAAAAAAGGTGAAAATGAAAAGCAAAGAGGAGAAAGTGGAAATCACAATCTTGATTTGCA
 
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rJMSF002D05-          TTGGCACACACTTAAAACAGAAGTGCCAAANCATGCACCACTGTAGATGGAGATAGAGAT
rJMSF001D05-          TTGGCACACACTTAAAACAGAAGTGCCAAAACATGCACCACTGTAGATGGAGATAGAGAT
                      ____________________________________________________________
consensus             TTGGCACACACTTAAAACAGAAGTGCCAAAACATGCACCACTGTAGATGGAGATAGAGAT
 
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rJMSF002D05-          AGAGACCCTCAGATCAATTCACCAAATCTTGGTTGGTATTTACAATTCCTCCATGGATTT
rJMSF001D05-          AGAGACCCTCAGATCAATTCACCAAATCTTGGTTGGTATTTACAATTCCTCCATGGATTT
                      ____________________________________________________________
consensus             AGAGACCCTCAGATCAATTCACCAAATCTTGGTTGGTATTTACAATTCCTCCATGGATTT
 
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rJMSF002D05-          GGCTCACAATTATTGCAGACCTCCACAATTAGGCATTGCTCCTGTATGATCCCAGAGCTT
rJMSF001D05-          GGCTCACAATTATTGCAGACCTCCACAATTAGGCATTGCTCCTGTATGATCCCAGAGCTT
                      ____________________________________________________________
consensus             GGCTCACAATTATTGCAGACCTCCACAATTAGGCATTGCTCCTGTATGATCCCAGAGCTT
 
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rJMSF002D05-          TGGCTGCTCCTGCTCTCAGCACATACTGGTGGTACACTGCAGCAATGGCAGCTCCAACAA
rJMSF001D05-          TGGCTGCTCCTGCTCTCAGCACATACTGGTGGTACACTGCAGCAATGGCAGCTCCAACAA
                      ____________________________________________________________
consensus             TGGCTGCTCCTGCTCTCAGCACATACTGGTGGTACACTGCAGCAATGGCAGCTCCAACAA
 
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rJMSF002D05-          ATGGTCCAACCCAGAATATCCACTGTCATAACAATTCANCCATGTCACTATCCATATAAC
rJMSF001D05-          ATGGTCCAACCCAGAATATCCACTGTCATAACAATTCAACCATGTCACTATCCATATAAC
                      ____________________________________________________________
consensus             ATGGTCCAACCCAGAATATCCACTGTCATAACAATTCAACCATGTCACTATCCATATAAC
 
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rJMSF002D05-          TAATATAATCCCAACCAATTAAGTTAATAAGACAGTTGACTTATTAACTACTGAATCNGT
rJMSF001D05-          TAATATAATCCCAACCAATTAAGTTAATAAGACAGTTGACTTATTAACTACTGAATCAGT
                      ____________________________________________________________
consensus             TAATATAATCCCAACCAATTAAGTTAATAAGACAGTTGACTTATTAACTACTGAATCAGT
 
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rJMSF002D05-          CATGGTTACGGGTTTTTCTCGTCATTCTGTATTTACTTACTTGGNCNTCCCAGGCCTTGT
rJMSF001D05-          CATGGTTACGGGTTTTTCTCGTCATTCTGTATTTACTTACTTGGTCATCCCAGGCCTTGT
JMFF028I05+                                                    TGGTCATCCCAGGCCTTGT
                      ____________________________________________________________
consensus             CATGGTTACGGGTTTTTCTCGTCATTCTGTATTTACTTACTTGGTCATCCCAGGCCTTGT
 
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rJMSF002D05-          CTTTGCCATAGATGACAGCAGCTCCAAAGCTCCTAGCCGGGTTAATCCCGGTGCCGGTGA
rJMSF001D05-          CTTTGCCATAGATGACAGCAGCTCCAAAGCTCCTAGCCGGGTTAATCCCGGTGCCGGTGA
JMFF028I05+           CTTTGTTGTAGATCACTGCCGCTCCGAAGCTCCTCGCCGGGTTTATGCCGGTTCCGGTGA
                      ____________________________________________________________
consensus             CTTTGCCATAGATGACAGCAGCTCCAAAGCTCCTAGCCGGGTTAATCCCGGTGCCGGTGA
 
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rJMSF002D05-          TCGGAATTGTGGCCAAGTGAACCATAAACACAGCANATCCAATTGGGAGTGGAGCCAACA
rJMSF001D05-          TCGGAATTGTGGCCAAGTGAACCATAAACACAGCAAATCCAATTGGGAGTGGAGCCAACA
JMFF028I05+           TCGGAATTGTCGCAAGGTGTACCATGAACACCGCAAATCCAATCGGAAGGGGAGCCAACA
JMFN040P20+                                           GCAAATCCAATCGGAAGGGGAGCCAACA
                      ____________________________________________________________
consensus             TCGGAATTGTGGCCAAGTGAACCATAAACACAGCAAATCCAATTGGGAGTGGAGCCAACA
 
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rJMSF002D05-          C                                                           
rJMSF001D05-          C                                                           
JMFF028I05+           CGGGAACATGTGAGTCTCTTGCATTTCTCTTAGGATCGGTTGCAGCAAAGACAGTGTAGA
JMFN040P20+           CGGGAACATGTGAGTCTCTTGCATTTCTCTTAGGATCGGTTGCAGCAAAGACAGTGTAGA
                      ____________________________________________________________
consensus             CGGGAACATGTGAGTCTCTTGCATTTCTCTTAGGATCGGTTGCAGCAAAGACAGTGTAGA
 
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JMFF028I05+           CCAACACGAAAGTACCAATTATCTCTGCACCCAAACCAGTCCCCTTGTTGTAGCCAGGTT
JMFN040P20+           CCAACACGAAAGTACCAATTATCTCTGCACCCAAACCAGTCCCCTTGTTGTAGCCAGGTT
JMFF024M21+                                                           TGTAGCCAGGTT
                      ____________________________________________________________
consensus             CCAACACGAAAGTACCAATTATCTCTGCACCCAAACCAGTCCCCTTGTTGTAGCCAGGTT
 
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JMFF028I05+           GCAGCATGTTGGCTCCGCCGCCATACCTGTTAAAATAAGCTTTCTGAAACGCCTTCACCA
JMFN040P20+           GCAGCATGTTGGCTCCGCCGCCATACCTGTTAAAATAAGCTTTCTGAAACGCCTTCACCA
JMFN037G10+                                                             GCCTTCACCA
JMFF024M21+           GCAGCATGTTGGCTCCGCCGCCATACCTGTTAAAATAAGCTTTCTGAAACGCNTTCACCA
                      ____________________________________________________________
consensus             GCAGCATGTTGGCTCCGCCGCCATACCTGTTAAAATAAGCTTTCTGAAACGCCTTCACCA
 
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JMFF028I05+           ACCCTACACCGCAGATAACACC                                      
JMFN040P20+           ACCCTACACCGCAGATAGCACCCAAACACTGTGCTATCATGTACACGACTGCCCTCACCA
JMFN037G10+           ACCCTACACCGCAGATAGCACCCAAACACTGTGCTATCATGTACACCACTGCCCTCACCA
JMFF024M21+           ACCTTACACCGCAGATAGCACCCAAACACTGTGCTATCATGTACACCACTGCCCTCACCA
                      ____________________________________________________________
consensus             ACCCTACACCGCAGATAGCACCCAAACACTGTGCTATCATGTACACCACTGCCCTCACCA
 
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JMFN040P20+           GTGACACCTTTCTCCCCACAAATAGCCCAAATGTCACCGCCGGGTTTATGTGCCCCCCGG
JMFN037G10+           GTGACACCTTTCTCCCCACAAATAGCCCAAATGTCACCGCCGGGTTTATGTGCCCCCCGG
JMFF024M21+           GTGACACCTTTCTCCCCACAAATAGCCCAAATGTCACCGCCGGGTTTATGTGCCCCCCGG
                      ____________________________________________________________
consensus             GTGACACCTTTCTCCCCACAAATAGCCCAAATGTCACCGCCGGGTTTATGTGCCCCCCGG
 
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JMFN040P20+           AGATGCCGGCGGTGCAGTAAACGAGGATGAAGATCATGCCACCAAAAGCCCAGGCGATGC
JMFN037G10+           AGATGCCGGCGGTGCAGTAAACGAGGATGAAGATCATGCCACCAAAAGCCCAGGCGATGC
JMFF024M21+           AGATGCCGGCGGTGCAGTAAACGAGGATGAAGATCATGCCACCAAAAGCCCAGGCGATGC
                      ____________________________________________________________
consensus             AGATGCCGGCGGTGCAGTAAACGAGGATGAAGATCATGCCACCAAAAGCCCAGGCGATGC
 
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JMFN040P20+           CGAGGATGCCGACGCCGCCGCAGTCTTGGCCGCCGGCTTTCAAGTCGGTCTGGTGGCTGT
JMFN037G10+           CGAGGATGCCGACGCCGCCGCAGTCTTGGCCGCCGGCTTTCAAGTCGGTCTGGTGGCTGT
JMFF024M21+           CGAGGATGCCGACGCCGCCGCAGTCTTGGCCGCCGGCTTTCAAGTCGGTCTGGTGGCTGT
                      ____________________________________________________________
consensus             CGAGGATGCCGACGCCGCCGCAGTCTTGGCCGCCGGCTTTCAAGTCGGTCTGGTGGCTGT
 
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JMFN040P20+           AGCCGATGACCGTCAAGACGGTGACGTAAAGGAAGAGAAGGGTGGCGATGAACTCGGCGA
JMFN037G10+           AGCCGATGACCGTCAAGACGGTGACGTAAAGGAAGAGAAGGGTGGCGATGAACTCGGCGA
JMFF024M21+           AGCCGATGACCGTCAAGACGGTGACGTAAAGGAAGAGAAGGGTGGCGATGAACTCGGCGA
                      ____________________________________________________________
consensus             AGCCGATGACCGTCAAGACGGTGACGTAAAGGAAGAGAAGGGTGGCGATGAACTCGGCGA
 
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JMFN040P20+           TGGCGGCCCTGTAAAAAGACCATTTTGTCAGCTCATCGAAGTCGATCAGCGGCGCCGGCG
JMFN037G10+           TGGCGGCCCTGTAAAAAGACCATTTTGTCAGCTCATCGAAGTCGATCAGCGGCGCCGGCG
JMFF024M21+           TGGCGGCCCTGTAAAAAGACCATTTTGTCAGCTCATCGAAGTCGATCAGCGGCGCCGGCG
                      ____________________________________________________________
consensus             TGGCGGCCCTGTAAAAAGACCATTTTGTCAGCTCATCGAAGTCGATCAGCGGCGCCGGCG
 
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JMFN040P20+           GCGGGTCGTGGTAGTCCTTGGC                                      
JMFN037G10+           GCGGGTCGTGGTAGTCCTTGGC                                      
JMFF024M21+           GCGGGTCGTGGTAGTCCTTGGCCGAATGCTCCGCCGTGCCTTCAATGTCCTTAGCCATAG
                      ____________________________________________________________
consensus             GCGGGTCGTGGTAGTCCTTGGCCGAATGCTCCGCCGTGCCTTCAATGTCCTTAGCCATAG
 
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JMFF024M21+           CTAACCAAAAGTATTTTTATTATATACTTTCTTTTTTGCTTTTAATTTGGGGAGGGTGGT
                      ____________________________________________________________
consensus             CTAACCAAAAGTATTTTTATTATATACTTTCTTTTTTGCTTTTAATTTGGGGAGGGTGGT