Contig 000122:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022H10Sequence392000122 (3)ref|XP_010112626.1|7e-44PIN2/TERF1-interacting telomerase inhibitor 1 [Morus notabilis] gb|EXC34351.1| P184022336
JMSF050A13Sequence648000122 (3)ref|XP_009768824.1|252PREDICTED: uncharacterized protein LOC104219789 [Nicotiana sylvestris]614014122 (2)ref|XP_006343928.1|3e-07PREDICTED: G patch domain-containing protein 4-like [Solanum tuberosum]
JMSF052B09Sequence652000122 (3)ref|XP_009768824.1|255PREDICTED: uncharacterized protein LOC104219789 [Nicotiana sylvestris]720014122 (2)ref|XP_006343928.1|2e-20PREDICTED: G patch domain-containing protein 4-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF052B09+               TTTCAGATGCCTCCACTACCTCTGCCAAATCCTTAACATCATTTGCTGGTGCAGAC
JMSF050A13+                    GATGCCTCCACTACNTCTGCCAAATCCTTAACATCATTTGCTGGTGCAGAC
                      ____________________________________________________________
consensus                 TTTCAGATGCCTCCACTACCTCTGCCAAATCCTTAACATCATTTGCTGGTGCAGAC
 
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JMSF052B09+           TTTGTCTTCTTGACAAGAATTCCTTCAAGATCATGAGAAGAATATGAGTGGACAAGCTTC
JMSF050A13+           TTTGTCTTCTTGACAAGAATTCCTTCAAGATCATGAGAAGAATATGAGTGGACAAGCTTC
                      ____________________________________________________________
consensus             TTTGTCTTCTTGACAAGAATTCCTTCAAGATCATGAGAAGAATATGAGTGGACAAGCTTC
 
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JMSF052B09+           CCCCTTTCTCTTTTCTTATATCTTCCTTGTGGACGAGTTACTTTAGCAACTGCTTCTTCA
JMSF050A13+           CCCCTTTCTCTTTTCTTATATCTTCCTTGTGGACGAGTTACTTTAGCAACTGCTTCTCCA
                      ____________________________________________________________
consensus             CCCCTTTCTCTTTTCTTATATCTTCCTTGTGGACGAGTTACTTTAGCAACTGCTTCTTCA
 
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JMSF052B09+           TTGCTTGGAGAATTCTTTGTCTTTGTGTCCACTTGCATTTCATCCTTACCATTTACTTCT
JMSF050A13+           TTGCTTGGAGAATTCTTTGTCTTTGTGTCCACTTGCATTTCATCCTTACCATTTACTTCT
                      ____________________________________________________________
consensus             TTGCTTGGAGAATTCTTTGTCTTTGTGTCCACTTGCATTTCATCCTTACCATTTACTTCT
 
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JMSF052B09+           TCATTCTTGGACTCAGTGGCTTGCACTTTAAGTCTTTTGAGGATGCTATCAAACTGAGTT
JMSF050A13+           TCATTCTTGGACTCAGTGGCTTGCACTTTAAGTCTTTTGAGGATGCTATCAAACTGAGTT
JMFF022H10+                                       TAAGTCTTTTGAGGATGCTATCAAACTGAGTT
                      ____________________________________________________________
consensus             TCATTCTTGGACTCAGTGGCTTGCACTTTAAGTCTTTTGAGGATGCTATCAAACTGAGTT
 
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JMSF052B09+           GTATCAAATGCCCAGTTGTTAGGCTGTTCTGTTCCGATACCTGCAGTATCTTGTTTGTTT
JMSF050A13+           GTATCAAATGCCCAGTTGTTAGGCTGTTCTGTTCCGATACCTGCAGTATCTTGTTTGTTT
JMFF022H10+           GTATCAAATGCCCAGTTGTTAGGCTGTTCTGTTCCGATACCTGCAGTATCTTGTTTGTTT
                      ____________________________________________________________
consensus             GTATCAAATGCCCAGTTGTTAGGCTGTTCTGTTCCGATACCTGCAGTATCTTGTTTGTTT
 
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JMSF052B09+           TTAACTCTGACATGTCCTTTGATACCTTGTTTATCTTTTCCTAGCCCTTCTCCTTCTTCC
JMSF050A13+           TTAACTCTGACATGTCCTTTGATACCTTGTTTATCTTTTCCTAGCCCTTCTCCTTCTTCC
JMFF022H10+           TTAACTCTGACATGTCCTTTGATACCTTGTTTATCTTTTCCTAGCCCTTCTCCTTCTTCC
                      ____________________________________________________________
consensus             TTAACTCTGACATGTCCTTTGATACCTTGTTTATCTTTTCCTAGCCCTTCTCCTTCTTCC
 
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JMSF052B09+           CATCCCATTTGTTTCATGAGGCGGAAGGCGGCGGAATCTCTAGCTATGCCGACATATTTA
JMSF050A13+           CATCCCATTTGTTTCATGAGGCGGAAGGCGGCGGAATCTCTAGCTATGCCGACATATTTA
JMFF022H10+           CATCCCATTTGTTTCATGAGGCGGAAGGCGGCGGAATCTCTAGCTATGCCGACATATTTA
                      ____________________________________________________________
consensus             CATCCCATTTGTTTCATGAGGCGGAAGGCGGCGGAATCTCTAGCTATGCCGACATATTTA
 
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JMSF052B09+           ACAGGAGCTTCAGGGGCAGCCATGATCAAGACGATCTGGTAATCTCAAAATTGGCACCAA
JMSF050A13+           ACAGGAGCTTCAGGGGCAGCCATGATCAAGACGATCTGGTAATCTCAAAATTGGCACCAA
JMFF022H10+           ACAGGAGCTTCAGGGGCAGCCATGATCAAGACGATCTGGTAATCTCAAAATTGGCACCAA
                      ____________________________________________________________
consensus             ACAGGAGCTTCAGGGGCAGCCATGATCAAGACGATCTGGTAATCTCAAAATTGGCACCAA
 
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JMSF052B09+           ACGCCTCTCCTTCTCTATCTCTCTCTCTCTCTCTCTCTCTCCCTACTTGAAAATACAAAA
JMSF050A13+           ACGCCTCTCCTTCTCTATCTCTCTCTCTCTCTCTCTCTCTCCCTACTTGAAAATACAAAA
JMFF022H10+           ACGCCTCTCCTTCTCTATCTCTCTCTCTCTCTCTCTCTCTCCCTACTTGAAAATACAAAA
                      ____________________________________________________________
consensus             ACGCCTCTCCTTCTCTATCTCTCTCTCTCTCTCTCTCTCTCCCTACTTGAAAATACAAAA
 
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JMSF052B09+           GTGAGAGAGGAAGAAGAGCGTCGGAGGGCGGCGAAAAGAGA                   
JMSF050A13+           GTGAGAGAGGAAGAAGAGCGTCGGAGGGCGGCGAAAAGAGA                   
JMFF022H10+           GTGAGAGAGGAAGAAGAGCGTCGGAGGGCGGCGAAGAGAGAAAGCTTAGGCGCAGTATGC
                      ____________________________________________________________
consensus             GTGAGAGAGGAAGAAGAGCGTCGGAGGGCGGCGAAAAGAGAAAGCTTAGGCGCAGTATGC