Contig 000120:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007M04Sequence603000120 (4)ref|XP_004248342.1|2e-63PREDICTED: fasciclin-like arabinogalactan protein 1 [Solanum lycopersicum]617011096 (4)ref|XP_006352538.1|2e-45PREDICTED: fasciclin-like arabinogalactan protein 1-like [Solanum tuberosum]
JMFF007M15Sequence416000120 (4)ref|XP_004248342.1|9e-43PREDICTED: fasciclin-like arabinogalactan protein 1 [Solanum lycopersicum]
JMFF022B17Sequence546000120 (4)ref|XP_004248342.1|1e-71PREDICTED: fasciclin-like arabinogalactan protein 1 [Solanum lycopersicum]751011096 (4)ref|XP_009802278.1|1e-75PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana sylvestris]
JMFF030M08Sequence416000120 (4)ref|XP_011097758.1|7e-44PREDICTED: fasciclin-like arabinogalactan protein 1 [Sesamum indicum]692011096 (4)ref|XP_006352538.1|3e-64PREDICTED: fasciclin-like arabinogalactan protein 1-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF007M04+ CCGC
                      ____________________________________________________________
consensus CCGC
 
. : . : . : . : . : . :
JMFF007M04+ TTGCGGCGACGGCAAGATACGACTGATCTGGAGAACGGAAATGTTGTAGGGTATCTCCTC
JMFF022B17+ CTCCTC
                      ____________________________________________________________
consensus TTGCGGCGACGGCAAGATACGACTGATCTGGAGAACGGAAATGTTGTAGGGTATCTCCTC
 
. : . : . : . : . : . :
JMFF007M04+ GATAGACTTGACGTAAGTGGCCGGCAGGGATCCGCCGTTGTCCTCAGGCCCAAATCCGAC
JMFF022B17+ GATAGACTTGACGTAAGTGGCCGGCAGGGATCCGCCGTTGTCCTCAGGCCCAAATCCGAC
                      ____________________________________________________________
consensus GATAGACTTGACGTAAGTGGCCGGCAGGGATCCGCCGTTGTCCTCAGGCCCAAATCCGAC
 
. : . : . : . : . : . :
JMFF007M04+ TTTTCCGCCCTT-AGATCCGTGATATTGACAAAGCCGGTGGAGCCGGACGCCGAGCCGGA
JMFF022B17+ TTTTCCGCCCTTCAGATCCGTGATATTGACAAAGCCGGTGGAGCCGGACGCCGAGCCGGA
                      ____________________________________________________________
consensus TTTTCCGCCCTTCAGATCCGTGATATTGACAAAGCCGGTGGAGCCGGACGCCGAGCCGGA
 
. : . : . : . : . : . :
JMFF007M15+ TGGAACATAGTAGCGGCCAAAGCCGTACCATTGGAGATCTGGTGGAGCTTCTTGGT
JMFF007M04+ GGCCTGGAACATAGTAGCGGCCAAAGCCGTACCATTGGAGATTTGGTGGAGCTTCTTGGT
JMFF030M08+ TGGAACATAGTAGCGGCCAAAGCCGTACCATTGGAGATTTGGTGGAGCTTCTTGGT
JMFF022B17+ GGCCTGGAACATAGTAGCGGCCAAAGCCGTACCATTGGAGATTTGGTGGAGCTTCTTGGT
                      ____________________________________________________________
consensus GGCCTGGAACATAGTAGCGGCCAAAGCCGTACCATTGGAGATTTGGTGGAGCTTCTTGGT
 
. : . : . : . : . : . :
JMFF007M15+ GTNGTAGTAGTCCAGAAGGACGTGAAGGGAGAGCACATTCTTAATGGTGTTAATGGACAG
JMFF007M04+ GTCGTAGTAGTCCAGAAGGACGTGAAGGGAGAGCACATTCTTAATGGTGTTAATGGACAG
JMFF030M08+ GTCGTAGTAGTCCAGAAGGACGTGAAGGGAGAGCACATTCTTAATGGTGTTAATGGACAG
JMFF022B17+ GTCGTAGTAGTCCAGAAGGACGTGAAGGGAGAGCACATTCTTAATGGTGTTAATGGACAG
                      ____________________________________________________________
consensus GTCGTAGTAGTCCAGAAGGACGTGAAGGGAGAGCACATTCTTAATGGTGTTAATGGACAG
 
. : . : . : . : . : . :
JMFF007M15+ GTGCTTGGCGAGCAGATCCGCCATGGCCGCCTCGTCGACGGCGCAGACGGTTATGGTCTC
JMFF007M04+ GTGCTTGGCGAGCAGATCCGCCATGGCCGCCTCGTCGACGGCGCAGACGGTTATGGTCTC
JMFF030M08+ GTGCTTGGCGAGCAGATCCGCCATGGCCGCCTCGTCGACGGCGCAGACGGTTATGGTCTC
JMFF022B17+ GTGCTTGGCGAGCAGATCCGCCATGGCCGCCTCGTCGACGGCGCAGACGGTTATGGTCTC
                      ____________________________________________________________
consensus GTGCTTGGCGAGCAGATCCGCCATGGCCGCCTCGTCGACGGCGCAGACGGTTATGGTCTC
 
. : . : . : . : . : . :
JMFF007M15+ GCGGTTGTTGATATCGGCGGCGAGGTGTGTCAGTGTCAGGTAGTGATTAAAGGTAGCAAA
JMFF007M04+ GCGGTTGTTGATATCGGCGGCGAGGTGTGTCAGTGTCAGGTAGTGATTAAAGGTAGCAAA
JMFF030M08+ GCGGTTGTTGATATCGGCGGCGAGGTGTGTCAGTGTCAGGTAGTGATTAAAGGTAGCAAA
JMFF022B17+ GCGGTTGTTGATATCGGCGGCGAGGTGTGTCAGTGTCAGGTAGTGATTAAAGGTAGCAAA
                      ____________________________________________________________
consensus GCGGTTGTTGATATCGGCGGCGAGGTGTGTCAGTGTCAGGTAGTGATTAAAGGTAGCAAA
 
. : . : . : . : . : . :
JMFF007M15+ CGCTTTATCCTTGGCCAGAATGCGGGTGATATTGTGGGCTACGGCGCCTTCCGGCCAAAG
JMFF007M04+ CGCTTTATCCTTGGCCAGAATGCGGGTGATATTGTGGGCTACGGCGCCTTCCGGCCAAAG
JMFF030M08+ CGCTTTATCCTTGGCCAGAATGCGGGTGATATTGTGGGCTCCGGCGCCTTCCGGCCAAAG
JMFF022B17+ CGCTTTATCCTTGGCCAGAATGCGGGTGATATTGTGGGCTCCGGCGCCTTCCGGCCAAAG
                      ____________________________________________________________
consensus CGCTTTATCCTTGGCCAGAATGCGGGTGATATTGTGGGCTCCGGCGCCTTCCGGCCAAAG
 
. : . : . : . : . : . :
JMFF007M15+ CAACACTGTAAAACAGAGAAACGCCGCAACCACGGCGGCCGTTGAGAGGCTCTGCATTTT
JMFF007M04+ CAACACTGTAAAACAGAGAAACGCCGCAACCACGGCGGCCGTTGAGAGGCTCTGCATTTT
JMFF030M08+ CAACACTGTAAAACAGAGAAACGCCGCAACCACGGCGGCCGTTGAGAGGCTCTGCATTTT
JMFF022B17+ CAACACTGTAAAACAGAGAAACGCCGCAACCACGGCGGCCGTTGAGAGGCTCTGCATTTT
                      ____________________________________________________________
consensus CAACACTGTAAAACAGAGAAACGCCGCAACCACGGCGGCCGTTGAGAGGCTCTGCATTTT
 
. : . : . : . : . : . :
JMFF007M15+ CAGTTTGAAGGGAGGCGAGAGTTGCGATGATGGTTTTAGCTTTTCAGTTGCTTTGGAAGT
JMFF007M04+ CAGTTTGAAGGGAGGCGAGAGTTGCGATGATGGTTTTAGCTTTTCAGTTGCTTTGGAAGT
JMFF030M08+ CAGTTTGAAGGGAGGCGAGAGTTGCGATGATGGTTTTAGCTTTTCAGTTGCTTTGGAAGT
JMFF022B17+ CAGTTTGAAGGGAGGCGAGAGTTGCGATGATGGTTTTAGCTTTTCAGTTGCTTTGGAAGT
                      ____________________________________________________________
consensus CAGTTTGAAGGGAGGCGAGAGTTGCGATGATGGTTTTAGCTTTTCAGTTGCTTTGGAAGT