| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007M04 | Sequence | 603 | 000120 (4) | ref|XP_004248342.1| | 2e-63 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Solanum lycopersicum] | 617 | 011096 (4) | ref|XP_006352538.1| | 2e-45 | PREDICTED: fasciclin-like arabinogalactan protein 1-like [Solanum tuberosum] |
| JMFF007M15 | Sequence | 416 | 000120 (4) | ref|XP_004248342.1| | 9e-43 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Solanum lycopersicum] | |||||
| JMFF022B17 | Sequence | 546 | 000120 (4) | ref|XP_004248342.1| | 1e-71 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Solanum lycopersicum] | 751 | 011096 (4) | ref|XP_009802278.1| | 1e-75 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana sylvestris] |
| JMFF030M08 | Sequence | 416 | 000120 (4) | ref|XP_011097758.1| | 7e-44 | PREDICTED: fasciclin-like arabinogalactan protein 1 [Sesamum indicum] | 692 | 011096 (4) | ref|XP_006352538.1| | 3e-64 | PREDICTED: fasciclin-like arabinogalactan protein 1-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFF007M04+ CCGC
____________________________________________________________
consensus CCGC
. : . : . : . : . : . :
JMFF007M04+ TTGCGGCGACGGCAAGATACGACTGATCTGGAGAACGGAAATGTTGTAGGGTATCTCCTC
JMFF022B17+ CTCCTC
____________________________________________________________
consensus TTGCGGCGACGGCAAGATACGACTGATCTGGAGAACGGAAATGTTGTAGGGTATCTCCTC
. : . : . : . : . : . :
JMFF007M04+ GATAGACTTGACGTAAGTGGCCGGCAGGGATCCGCCGTTGTCCTCAGGCCCAAATCCGAC
JMFF022B17+ GATAGACTTGACGTAAGTGGCCGGCAGGGATCCGCCGTTGTCCTCAGGCCCAAATCCGAC
____________________________________________________________
consensus GATAGACTTGACGTAAGTGGCCGGCAGGGATCCGCCGTTGTCCTCAGGCCCAAATCCGAC
. : . : . : . : . : . :
JMFF007M04+ TTTTCCGCCCTT-AGATCCGTGATATTGACAAAGCCGGTGGAGCCGGACGCCGAGCCGGA
JMFF022B17+ TTTTCCGCCCTTCAGATCCGTGATATTGACAAAGCCGGTGGAGCCGGACGCCGAGCCGGA
____________________________________________________________
consensus TTTTCCGCCCTTCAGATCCGTGATATTGACAAAGCCGGTGGAGCCGGACGCCGAGCCGGA
. : . : . : . : . : . :
JMFF007M15+ TGGAACATAGTAGCGGCCAAAGCCGTACCATTGGAGATCTGGTGGAGCTTCTTGGT
JMFF007M04+ GGCCTGGAACATAGTAGCGGCCAAAGCCGTACCATTGGAGATTTGGTGGAGCTTCTTGGT
JMFF030M08+ TGGAACATAGTAGCGGCCAAAGCCGTACCATTGGAGATTTGGTGGAGCTTCTTGGT
JMFF022B17+ GGCCTGGAACATAGTAGCGGCCAAAGCCGTACCATTGGAGATTTGGTGGAGCTTCTTGGT
____________________________________________________________
consensus GGCCTGGAACATAGTAGCGGCCAAAGCCGTACCATTGGAGATTTGGTGGAGCTTCTTGGT
. : . : . : . : . : . :
JMFF007M15+ GTNGTAGTAGTCCAGAAGGACGTGAAGGGAGAGCACATTCTTAATGGTGTTAATGGACAG
JMFF007M04+ GTCGTAGTAGTCCAGAAGGACGTGAAGGGAGAGCACATTCTTAATGGTGTTAATGGACAG
JMFF030M08+ GTCGTAGTAGTCCAGAAGGACGTGAAGGGAGAGCACATTCTTAATGGTGTTAATGGACAG
JMFF022B17+ GTCGTAGTAGTCCAGAAGGACGTGAAGGGAGAGCACATTCTTAATGGTGTTAATGGACAG
____________________________________________________________
consensus GTCGTAGTAGTCCAGAAGGACGTGAAGGGAGAGCACATTCTTAATGGTGTTAATGGACAG
. : . : . : . : . : . :
JMFF007M15+ GTGCTTGGCGAGCAGATCCGCCATGGCCGCCTCGTCGACGGCGCAGACGGTTATGGTCTC
JMFF007M04+ GTGCTTGGCGAGCAGATCCGCCATGGCCGCCTCGTCGACGGCGCAGACGGTTATGGTCTC
JMFF030M08+ GTGCTTGGCGAGCAGATCCGCCATGGCCGCCTCGTCGACGGCGCAGACGGTTATGGTCTC
JMFF022B17+ GTGCTTGGCGAGCAGATCCGCCATGGCCGCCTCGTCGACGGCGCAGACGGTTATGGTCTC
____________________________________________________________
consensus GTGCTTGGCGAGCAGATCCGCCATGGCCGCCTCGTCGACGGCGCAGACGGTTATGGTCTC
. : . : . : . : . : . :
JMFF007M15+ GCGGTTGTTGATATCGGCGGCGAGGTGTGTCAGTGTCAGGTAGTGATTAAAGGTAGCAAA
JMFF007M04+ GCGGTTGTTGATATCGGCGGCGAGGTGTGTCAGTGTCAGGTAGTGATTAAAGGTAGCAAA
JMFF030M08+ GCGGTTGTTGATATCGGCGGCGAGGTGTGTCAGTGTCAGGTAGTGATTAAAGGTAGCAAA
JMFF022B17+ GCGGTTGTTGATATCGGCGGCGAGGTGTGTCAGTGTCAGGTAGTGATTAAAGGTAGCAAA
____________________________________________________________
consensus GCGGTTGTTGATATCGGCGGCGAGGTGTGTCAGTGTCAGGTAGTGATTAAAGGTAGCAAA
. : . : . : . : . : . :
JMFF007M15+ CGCTTTATCCTTGGCCAGAATGCGGGTGATATTGTGGGCTACGGCGCCTTCCGGCCAAAG
JMFF007M04+ CGCTTTATCCTTGGCCAGAATGCGGGTGATATTGTGGGCTACGGCGCCTTCCGGCCAAAG
JMFF030M08+ CGCTTTATCCTTGGCCAGAATGCGGGTGATATTGTGGGCTCCGGCGCCTTCCGGCCAAAG
JMFF022B17+ CGCTTTATCCTTGGCCAGAATGCGGGTGATATTGTGGGCTCCGGCGCCTTCCGGCCAAAG
____________________________________________________________
consensus CGCTTTATCCTTGGCCAGAATGCGGGTGATATTGTGGGCTCCGGCGCCTTCCGGCCAAAG
. : . : . : . : . : . :
JMFF007M15+ CAACACTGTAAAACAGAGAAACGCCGCAACCACGGCGGCCGTTGAGAGGCTCTGCATTTT
JMFF007M04+ CAACACTGTAAAACAGAGAAACGCCGCAACCACGGCGGCCGTTGAGAGGCTCTGCATTTT
JMFF030M08+ CAACACTGTAAAACAGAGAAACGCCGCAACCACGGCGGCCGTTGAGAGGCTCTGCATTTT
JMFF022B17+ CAACACTGTAAAACAGAGAAACGCCGCAACCACGGCGGCCGTTGAGAGGCTCTGCATTTT
____________________________________________________________
consensus CAACACTGTAAAACAGAGAAACGCCGCAACCACGGCGGCCGTTGAGAGGCTCTGCATTTT
. : . : . : . : . : . :
JMFF007M15+ CAGTTTGAAGGGAGGCGAGAGTTGCGATGATGGTTTTAGCTTTTCAGTTGCTTTGGAAGT
JMFF007M04+ CAGTTTGAAGGGAGGCGAGAGTTGCGATGATGGTTTTAGCTTTTCAGTTGCTTTGGAAGT
JMFF030M08+ CAGTTTGAAGGGAGGCGAGAGTTGCGATGATGGTTTTAGCTTTTCAGTTGCTTTGGAAGT
JMFF022B17+ CAGTTTGAAGGGAGGCGAGAGTTGCGATGATGGTTTTAGCTTTTCAGTTGCTTTGGAAGT
____________________________________________________________
consensus CAGTTTGAAGGGAGGCGAGAGTTGCGATGATGGTTTTAGCTTTTCAGTTGCTTTGGAAGT