Contig 000116:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021L12Sequence431000116 (3)ref|XP_009774026.1|7e-37PREDICTED: LOW QUALITY PROTEIN: metal transporter Nramp6-like [Nicotiana sylves613004013 (3)emb|CDO98224.1|1e-59unnamed protein product [Coffea canephora]
JMSF020F19Sequence723000116 (3)ref|XP_011082369.1|9e-95PREDICTED: metal transporter Nramp6-like isoform X4 [Sesamum indicum]740004013 (3)ref|XP_011082362.1|5e-81PREDICTED: metal transporter Nramp1-like isoform X3 [Sesamum indicum]
JMSF032C10Sequence697000116 (3)ref|XP_009594426.1|3e-90PREDICTED: LOW QUALITY PROTEIN: metal transporter Nramp6-like [Nicotiana toment770004013 (3)ref|XP_011082362.1|3e-77PREDICTED: metal transporter Nramp1-like isoform X3 [Sesamum indicum]

Alignment

This contig is upended


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JMSF020F19+                                                                  CGCNA
                      ____________________________________________________________
consensus                                                                    CGCNA
 
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JMSF032C10+                                ACTAAGAAAGCAATGAATATCTCGAGTTTCCTCACCCCA
JMSF020F19+           AAGCATCCAACAATAGTGAATACTAAGAAAGCAATGAATATCTCGAGTTTCCTCACCCCA
                      ____________________________________________________________
consensus             AAGCATCCAACAATAGTGAATACTAAGAAAGCAATGAATATCTCGAGTTTCCTCACCCCA
 
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JMSF032C10+           TATTGTTGTAATAATAATAGAACAAATGTACTGCATCCCGTAATAAGTACACCACACCAC
JMSF020F19+           TATTGTTGTAATAATAATAGAACCAATGTACTGCATCCCGTAATAAGTACACCACACCAC
                      ____________________________________________________________
consensus             TATTGTTGTAATAATAATAGAACCAATGTACTGCATCCCGTAATAAGTACACCACACCAC
 
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JMSF032C10+           AGTGGTACTTTAAAGAGCATGTTCAAAGCAAAAGCTGTTCCAATCACTTCAGGAATGTCA
JMSF020F19+           AGTGGTACTTTAAAGAGCATGTTCAAAGCAAAAGCTGTTCCAATCACTTCAGGAATGTCA
                      ____________________________________________________________
consensus             AGTGGTACTTTAAAGAGCATGTTCAAAGCAAAAGCTGTTCCAATCACTTCAGGAATGTCA
 
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JMSF032C10+           CACGCAACGATAGCAACTTCCGCAAGAACCCATAAGATGAAATTTGGCACCCTGGAGTAT
JMSF020F19+           CACGCAACGATAGCAACTTCCGCAAGAACCCATAAGATGAAATTTGGCACCCTGGAGTAT
                      ____________________________________________________________
consensus             CACGCAACGATAGCAACTTCCGCAAGAACCCATAAGATGAAATTTGGCACCCTGGAGTAT
 
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JMSF032C10+           TCCTTTCTACAATGCTCCGCTAAATGCTTCCCTGTGACAACTCCGAGGTTTGCTGCAAGA
JMSF020F19+           TCCTTTCTACAATGCTCCGCTAAATGCTTCCCTGTGACAACTCCGAGGTTTGCTGCAAGA
JMFF021L12+                                                            TTGCTGCAAGA
                      ____________________________________________________________
consensus             TCCTTTCTACAATGCTCCGCTAAATGCTTCCCTGTGACAACTCCGAGGTTTGCTGCAAGA
 
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JMSF032C10+           GATTGGATTAGAAGAGCAGCAAACGAGGCCAATAGTATGATCCATAGTAACCCATATTTG
JMSF020F19+           GATTGGATTAGAAGAGCAGCAAACGAGGCCAATAGTATGATCCATAGTAACCCATATTTG
JMFF021L12+           GATTGGATTAGAAGAGCAGCAAACGAGGCCAATAGTATGATCCATAGTAACCCATATTTG
                      ____________________________________________________________
consensus             GATTGGATTAGAAGAGCAGCAAACGAGGCCAATAGTATGATCCATAGTAACCCATATTTG
 
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JMSF032C10+           TACTGAGCTCCAGCCTCCAGATCTGTCTGAAAGTTTCCAGGGTCAATATAAGCTATACAA
JMSF020F19+           TACTGAGCTCCAGCCTCCAGATCTGTCTGAAAGTTTCCAGGGTCAATATAAGCTATACAA
JMFF021L12+           TACTGAGCTCCAGCCTCCAGATCTGTCTGAAAGTTTCCAGGGTCAATATAAGCTATACAA
                      ____________________________________________________________
consensus             TACTGAGCTCCAGCCTCCAGATCTGTCTGAAAGTTTCCAGGGTCAATATAAGCTATACAA
 
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JMSF032C10+           ACAAGGAAGCCTGGACCCAAATATGAAAAGAAGTTTTTCCAGCTTTTCTTATCAGGTACG
JMSF020F19+           ACAAGGAAGCCTGGACCCAAATATGAAAAGAAGTTTTTCCAGCTTTTCTTATCAGGTACG
JMFF021L12+           ACAAGGAAGCCTGGACCCAAATATGAAAAGAAGTTTTTCCAGCTTTTCTTATCAGGTACG
                      ____________________________________________________________
consensus             ACAAGGAAGCCTGGACCCAAATATGAAAAGAAGTTTTTCCAGCTTTTCTTATCAGGTACG
 
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JMSF032C10+           ACAATCTGGTCGTGTTCAATGTTATCAATGAGTGGCTCATTGGAGAGGCTCCGATTGGCG
JMSF020F19+           ACAATCTGGTCGTGTTCAATGTTATCAATGAGTGGCTCATTGGAGAGGCTCCGATTGGCG
JMFF021L12+           ACAATCTGGTCGTGTTCAATGTTATCAATGAGTGGCTCATTGGAGAGGCTCCGATTGGCG
                      ____________________________________________________________
consensus             ACAATCTGGTCGTGTTCAATGTTATCAATGAGTGGCTCATTGGAGAGGCTCCGATTGGCG
 
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JMSF032C10+           GAGCTGGTCATGAACTGGGACTGTGCCGATTGCAAAGCCGCCATTTTTACAACTCCCCTT
JMSF020F19+           GAGCTGGTCATGAACTGGGACTGTGCCGATTGCAAAGCCGCCATTTTTACAACTCCCCTT
JMFF021L12+           GAGCTGGTCATGAACTGGGACTGTGCCGATTGCAAAGCCGCCATTTTTACAACTCCCCTT
                      ____________________________________________________________
consensus             GAGCTGGTCATGAACTGGGACTGTGCCGATTGCAAAGCCGCCATTTTTACAACTCCCCTT
 
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JMSF032C10+           TATTCCGAACCTCCGTTTCAATTCAATGCAACATAAATATATAAATATTAAAACTAGGCC
JMSF020F19+           TATTCCGAACCTCCGTTTCAATTCAATGCAACATAAATATATAAATATTAAAACTAGGCC
JMFF021L12+           TATTCCGAACCTCCGTTTCAATTCAATGCAACATAAATATATAAATATTAAAACTAGGCC
                      ____________________________________________________________
consensus             TATTCCGAACCTCCGTTTCAATTCAATGCAACATAAATATATAAATATTAAAACTAGGCC
 
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JMSF032C10+           TGCACCAGTATGTCCAGAAGAGAAGAGAAGAGGAGGAGAGGAAATTGGATGGAGTAC   
JMSF020F19+           TGCACCAGTATGTCCAGAAGAGAAGAGAAGAGGAGGAGAGGAAATTGGATGGAGTAC   
JMFF021L12+           TGCACCAGTATGTCCAGAAGAGAAGAGAAGAGGAGGAGAGGAAATTGGATGGAGTACAAG
                      ____________________________________________________________
consensus             TGCACCAGTATGTCCAGAAGAGAAGAGAAGAGGAGGAGAGGAAATTGGATGGAGTACAAG