Contig 000108:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020J17Sequence515000108 (2)ref|XP_008346846.1|8e-68PREDICTED: histone deacetylase 5-like [Malus domestica]
JMSF051K13Sequence645000108 (2)ref|XP_008346846.1|1e-102PREDICTED: histone deacetylase 5-like [Malus domestica]710019460ref|XP_009788039.1|2e-78PREDICTED: histone deacetylase 5 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF051K13+                                                                  CTTCC
                      ____________________________________________________________
consensus                                                                    CTTCC
 
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JMSF051K13+           AAAATGATTTTTGAGTACCATTTCCATGGTGAACATCCCAATCAACAATTAAAATTTTGT
                      ____________________________________________________________
consensus             AAAATGATTTTTGAGTACCATTTCCATGGTGAACATCCCAATCAACAATTAAAATTTTGT
 
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JMSF051K13+           TAATGCCCAAATCTTTTCGTTCATTCAATAAGTAACTTGTTGCAATAGCAACATTATTGT
                      ____________________________________________________________
consensus             TAATGCCCAAATCTTTTCGTTCATTCAATAAGTAACTTGTTGCAATAGCAACATTATTGT
 
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JMSF051K13+           ACAGGCAAAATCCCATGGGTTCATTCTTCTCTGCATGATGTCCAGGAGGCCTTACAATAG
JMFF020J17+                                    CTTCTCTGCATGATGTCCAGGAGGCCTTACAATAG
                      ____________________________________________________________
consensus             ACAGGCAAAATCCCATGGGTTCATTCTTCTCTGCATGATGTCCAGGAGGCCTTACAATAG
 
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JMSF051K13+           CAAAGGCAGAATCAAGTTCTCCATTGGCAACTTTCTCAGCAGCCTCTATGACAGAACCAG
JMFF020J17+           CAAAGGCAGAATCAAGTTCTCCATTGGCAACTTTCTCAGCAGCCTCTATGACAGAACCAG
                      ____________________________________________________________
consensus             CAAAGGCAGAATCAAGTTCTCCATTGGCAACTTTCTCAGCAGCCTCTATGACAGAACCAG
 
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JMSF051K13+           CAGCAAGATAAGCAGATTCTGATGACCCTTGATTGAAATATATGGAATTAAACTGAGCAG
JMFF020J17+           CAGCAAGATAAGCAGATTCTGATGACCCTTGATTGAAATATATGGAATTAAACTGAGCAG
                      ____________________________________________________________
consensus             CAGCAAGATAAGCAGATTCTGATGACCCTTGATTGAAATATATGGAATTAAACTGAGCAG
 
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JMSF051K13+           CAATCGAATTCCTTCGTGAATCTAACTTTGCAGAACTTATACTTTTAATCAAGTCAATGT
JMFF020J17+           CAATCGAATTCCTTCGTGAATCTAACTTTGCAGAACTTATACTTTTAATCAAGTCAATGT
                      ____________________________________________________________
consensus             CAATCGAATTCCTTCGTGAATCTAACTTTGCAGAACTTATACTTTTAATCAAGTCAATGT
 
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JMSF051K13+           GAAATTTGGTATGAACTAGAGCTATATGTTTATCCTCAGCTTCTTTTGCATCCAAGATTA
JMFF020J17+           GAAATTTGGTATGAACTAGAGCTATATGTTTATCCTCAGCTTCTTTTGCATCCAAGATTA
                      ____________________________________________________________
consensus             GAAATTTGGTATGAACTAGAGCTATATGTTTATCCTCAGCTTCTTTTGCATCCAAGATTA
 
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JMSF051K13+           CACATCTCTTAGCGATGCCGGAAGATTGGAGGCGGTTCCAGATGACACGAATTCGGTCCG
JMFF020J17+           CACATCTCTTAGCGATGCCGGAAGATTGGAGGCGGTTCCAGATGACACGAATTCGGTCCG
                      ____________________________________________________________
consensus             CACATCTCTTAGCGATGCCGGAAGATTGGAGGCGGTTCCAGATGACACGAATTCGGTCCG
 
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JMSF051K13+           GTTTTTCGGGGTGGTCCTCGTCGTCGGGGGTTGTGTGCTTACACATTCGGTCGTCGTATA
JMFF020J17+           GTTTTTCGGGGTGGTCCTCGTCGTCGGGGGTTGTGTGCTTACACATTCGGTCGTCGTATA
                      ____________________________________________________________
consensus             GTTTTTCGGGGTGGTCCTCGTCGTCGGGGGTTGTGTGCTTACACATTCGGTCGTCGTATA
 
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JMSF051K13+           TGAGGCCCACGCGCCGGTCACAGGAATCGGTGTTGGAGCCCATGGATTCCTGATCTTTGA
JMFF020J17+           TGAGGCCCACGCGCCGGTCACAGGAATCGGTGTTGGAGCCCATGGATTCCTGATCTTTGA
                      ____________________________________________________________
consensus             TGAGGCCCACGCGCCGGTCACAGGAATCGGTGTTGGAGCCCATGGATTCCTGATCTTTGA
 
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JMSF051K13+           ACACTTCACTGCGCTCTGCCGCCCTGCCGGTGAGATTCT                     
JMFF020J17+           ACACTTCACTGCGCTCTGCCGCCCTGCCGGTGAGATTCTGAGTTCGAATTGAAAAGAATC
                      ____________________________________________________________
consensus             ACACTTCACTGCGCTCTGCCGCCCTGCCGGTGAGATTCTGAGTTCGAATTGAAAAGAATC