| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019J12 | Sequence | 563 | 000101 (3) | ref|XP_006353341.1| | 2e-101 | PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Solanum tuberosum] | 791 | 008212 (3) | ref|XP_007038628.1| | 1e-35 | XB3 in isoform 3 [Theobroma cacao] ref|XP_007038629.1| XB3 in isoform 3 [Theobro |
| JMFF020B23 | Sequence | 627 | 000101 (3) | ref|XP_006353341.1| | 2e-117 | PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Solanum tuberosum] | 736 | 008212 (3) | ref|XP_007038628.1| | 5e-32 | XB3 in isoform 3 [Theobroma cacao] ref|XP_007038629.1| XB3 in isoform 3 [Theobro |
| JMSF036C11 | Sequence | 728 | 000101 (3) | ref|XP_006353341.1| | 1e-136 | PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Solanum tuberosum] | 741 | 008212 (3) | ref|XP_009780428.1| | 6e-40 | PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF036C11+ CCACATGCAGCATAATGCAANGGAGTGCTTCCAGCTCCTATAAG
____________________________________________________________
consensus CCACATGCAGCATAATGCAANGGAGTGCTTCCAGCTCCTATAAG
. : . : . : . : . : . :
JMSF036C11+ ATCCANTTGATGTTCCATAATGAAATGTAACAGCTGATACATTAGCATGAAGATCAAGCA
____________________________________________________________
consensus ATCCANTTGATGTTCCATAATGAAATGTAACAGCTGATACATTAGCATGAAGATCAAGCA
. : . : . : . : . : . :
JMSF036C11+ GGAGCTGTACACATTCAAAATATCCATTCAATGCAGCCATATGAAGAGCAGTAATACCAC
JMFF020B23+ TGCAGCCATATGAAGAGCAGTAATACCAC
____________________________________________________________
consensus GGAGCTGTACACATTCAAAATATCCATTCAATGCAGCCATATGAAGAGCAGTAATACCAC
. : . : . : . : . : . :
JMSF036C11+ CATCTGCAGACTTATTTACAAACTTTGCCAGAGCACCCTGATCGTGTTTGCTCTTTGAAT
JMFF020B23+ CATCTGCAGACTTATTTACAAACTTTGCCAGAGCACCCTGATCGTGTTTGCTCTTTGAAT
JMFF019J12+ CTGATCGTGTTTGCTCTTTGAAT
____________________________________________________________
consensus CATCTGCAGACTTATTTACAAACTTTGCCAGAGCACCCTGATCGTGTTTGCTCTTTGAAT
. : . : . : . : . : . :
JMSF036C11+ GAGAACTTTCACTTCTGTCAGCAATTGTTTCAGCATGTACAGATTCAAAAGAGGAACTGG
JMFF020B23+ GAGAACTTTCACTTCTGTCAGCAATTGTTTCAGCATGTACAGATTCAAAAGAGGAACTGG
JMFF019J12+ GAGAACTTTCACTTCTGTCAGCAATTGTTTCAGCATGTACAGATTCAAAAGAGGAACTGG
____________________________________________________________
consensus GAGAACTTTCACTTCTGTCAGCAATTGTTTCAGCATGTACAGATTCAAAAGAGGAACTGG
. : . : . : . : . : . :
JMSF036C11+ GAACAAAATCAGCCACCACAAGTCTTATGCACCTGACATGCCCATTCACTGCTGCAAAAT
JMFF020B23+ GAACAAAATCAGCCACCACAAGTCTTATGCACCTGACATGCCCATTCACTGCTGCAAAAT
JMFF019J12+ GAACAAAATCAGCCACCACAAGTCTTATGCACCTGACATGCCCATTCACTGCTGCAAAAT
____________________________________________________________
consensus GAACAAAATCAGCCACCACAAGTCTTATGCACCTGACATGCCCATTCACTGCTGCAAAAT
. : . : . : . : . : . :
JMSF036C11+ GAAGAGCAGTCCGCCCACTAAGATAGTCTGCTCTTGTAACATTGCATCTAAACAGAAGAA
JMFF020B23+ GAAGAGCAGTCCGCCCACTAAGATAGTCTGCTCTTGTAACATTGCATCTAAACAGAAGAA
JMFF019J12+ GAAGAGCAGTCCGCCCACTAAGATAGTCTGCTCTTGTAACATTGCATCTAAACAGAAGAA
____________________________________________________________
consensus GAAGAGCAGTCCGCCCACTAAGATAGTCTGCTCTTGTAACATTGCATCTAAACAGAAGAA
. : . : . : . : . : . :
JMSF036C11+ GAGTTTGAACAACTTCCCAGTGGCCATACCGACATGCTTGCATCAACGCCGTCTGACCAC
JMFF020B23+ GAGTTTGAACAACTTCCCAGTGGCCATACCGACATGCTTGCATCAACGCCGTCTGACCAC
JMFF019J12+ GAGTTTGAACAACTTCCCAGTTGCCATACCGACATGCTTGCATCAACGCCGTCTGACCAC
____________________________________________________________
consensus GAGTTTGAACAACTTCCCAGTGGCCATACCGACATGCTTGCATCAACGCCGTCTGACCAC
. : . : . : . : . : . :
JMSF036C11+ AGTAGTTTTTAGAATTCACATCTGCACCATTCTCAAGCAGCAATGCGACAATCTCGTTGT
JMFF020B23+ AGTAGTTTTTAGAATTCACATCTGCACCATTCTCAAGCAGCAATGCGACAATCTCGTTGT
JMFF019J12+ AGTAGTTTTTAGAATTCACATCTGCACCATTCTCAAGCAGCAATGCGACAATCTCGTTGT
____________________________________________________________
consensus AGTAGTTTTTAGAATTCACATCTGCACCATTCTCAAGCAGCAATGCGACAATCTCGTTGT
. : . : . : . : . : . :
JMSF036C11+ GACCCTTAGCAGCTGCAAAGTGAAGAGGCGAGTTGAGGCCACCAAAAGTGGAGTACTTTG
JMFF020B23+ GACCCTTAGCAGCTGCAAAGTGAAGAGGCGAGTTGAGGCCACCAAAAGTGGAGTACTTTG
JMFF019J12+ GACCCTTAGCAGCTGCAAAGTGAAGAGGCGAGTTGAGGCCACCAAAAGTGGAGTACTTTG
____________________________________________________________
consensus GACCCTTAGCAGCTGCAAAGTGAAGAGGCGAGTTGAGGCCACCAAAAGTGGAGTACTTTG
. : . : . : . : . : . :
JMSF036C11+ CTAAATACGGGTTGCAATCAAGCAGCATCTTGGCTTCTACATAGTCACCGTCCCTTGCAG
JMFF020B23+ CTAAATACGGGTTGCAATCAAGCAGCATCTTGGCTTCTACATAGTCACCGTCCCTTGCAG
JMFF019J12+ CTAAATACGGGTTGCAATCAAGCAGCATCTTGGCTTCTACATAGTCACCGTCCCTTGCAG
____________________________________________________________
consensus CTAAATACGGGTTGCAATCAAGCAGCATCTTGGCTTCTACATAGTCACCGTCCCTTGCAG
. : . : . : . : . : . :
JMSF036C11+ CTGAGACTAGCCGCTCCCCTGATGCAGAGCACCCAAAGGAGTTCCCCATCTTTCTTTCCC
JMFF020B23+ CTGAGACTAGCCGCTCTCCTGATGCAGAGCACCCAAAGGAGTTCCCCATCTTTCTTTCCC
JMFF019J12+ CTGAGACTAGCCGCTCTCCTGATGCAGAGCACCCAAAGGAGTTCCCCATCTTTCTTTCCC
____________________________________________________________
consensus CTGAGACTAGCCGCTCTCCTGATGCAGAGCACCCAAAGGAGTTCCCCATCTTTCTTTCCC
. : . : . : . : . : . :
JMSF036C11+ TCTCTCTTCTCTGGAACAATC
JMFF020B23+ TCTCTCTTCTCTGGAACAATCTCAGTTTCTCTCTCTAAATCTCTAAGTATATACAGAC
JMFF019J12+ TCTCTCTTCTCTGGAACAATCTCAGTTTCTCTCTCTAAATCTCTAAGTATATACAGACGT
____________________________________________________________
consensus TCTCTCTTCTCTGGAACAATCTCAGTTTCTCTCTCTAAATCTCTAAGTATATACAGACGT