| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018B22 | Sequence | 549 | 000091 (6) | ref|XP_002279933.1| | 2e-05 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro | 562 | 000091 (6) | ref|XP_002279933.1| | 3e-05 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro |
| JMFN045D11 | Sequence | 561 | 000091 (6) | ref|XP_002279933.1| | 3e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro | |||||
| JMFS039A02 | Sequence | 544 | 000091 (6) | ref|XP_002279933.1| | 3e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro | |||||
| JMSF042G16 | Sequence | 560 | 000091 (6) | ref|XP_002279933.1| | 4e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro | 516 | 000091 (6) | ref|XP_002279933.1| | 3e-07 | PREDICTED: DNA-binding protein S1FA [Vitis vinifera] emb|CBI32704.3| unnamed pro |
This contig is upended
. : . : . : . : . : . :
JMFN045D11+ AATCGAAGTGACAC
____________________________________________________________
consensus AATCGAAGTGACAC
. : . : . : . : . : . :
rJMSF042G16- ATCTTGCTTTTCT
JMSF042G16+ TTCAGAAATCAAAAGAGATTTATTCCACCTACCCATATCTTGCTTTTCT
JMFN045D11+ ATCACTACAAATTCAGAAATCAAAAGAGATTTATTCCACCTACCCATATCTTGCTTTTCT
JMFS039A02+ TTCAGAAATCAAAAGAGATTTATTCCACCTACCCATATCTTGCTTTTCT
rJMFF018B22- ACCTACCCATATCTTGCTTTTCT
JMFF018B22+ TGCTTTTCT
____________________________________________________________
consensus ATCACTACAAATTCAGAAATCAAAAGAGATTTATTCCACCTACCCATATCTTGCTTTTCT
. : . : . : . : . : . :
rJMSF042G16- TTCACTTTTTGCAGTGATATCACAGGTAGATGAGGTTGAGGGGATATTATTGTTCATTGC
JMSF042G16+ TTCACTTTTTGCAGTGATATCACAGGTAGATGAGGTTGAGGGGATATTATTGTTCATTGC
JMFN045D11+ TTCACTTTTTGCAGTGATATCACAGGTAGATGAGGTTGAGGGGATATTATTGTTCATTGC
JMFS039A02+ TTCACTTTTTGCAGTGATATCACAGGTAGATGAGGTTGAGGGGATATTATTGTTCATTGC
rJMFF018B22- TTCACTTTTTGCAGTGATATCACAGGTAGATGAGGTTGAGGGGATATTATTGTTCATTGC
JMFF018B22+ TTCACTTTTTGCAGTGATATCACAGGTAGATGAGGTTGAGGGGATATTATTGTTCATTGC
____________________________________________________________
consensus TTCACTTTTTGCAGTGATATCACAGGTAGATGAGGTTGAGGGGATATTATTGTTCATTGC
. : . : . : . : . : . :
rJMSF042G16- AAACCCCAA-CCATCTCTCTACTTATTTTCTTCACATTGCTAATCAAGTCTCAAACTGAA
JMSF042G16+ AAACCCCAA-CCATCTCTCTACTTATTTTCTTCACATTGCTAATCAAGTCTCAAACTGAA
JMFN045D11+ AAACCCCAA-CCATCTCTCTACTTATTTTCTTCACATTGCTAATCAAGTCTCAAACTGAA
JMFS039A02+ AAACCCCAA-CCATCTCTCTACTTATTTTCTTCACATTGCTAATCAAGTCTCAAACTGAA
rJMFF018B22- AAACCCCAA-CCATCTCTCTACTTATTTTCTTCACATTGCTAATCAAGTCTCAAACTGAA
JMFF018B22+ AAACCCCAACCCATCTCTCTACTTATTTTCTTCACATTGCTAATCAAGTCTCAAACTGAA
____________________________________________________________
consensus AAACCCCAA-CCATCTCTCTACTTATTTTCTTCACATTGCTAATCAAGTCTCAAACTGAA
. : . : . : . : . : . :
rJMSF042G16- GCAAACTACATGAACTGAAAATAGAACAAAATTAACAAACTCATATAGGAACTTGGAGCC
JMSF042G16+ GCAAACTACATGAACTGAAAATAGAACAAAATTAACAAACTCATATAGGAACTTGGAGCC
JMFN045D11+ GCAAACTACATGAACTGAAAATAGAACAAAATTAACAAACTCATATAGGAACTTGGAGCC
JMFS039A02+ GCAAACTACATGAACTGAAAATAGAACAAAATTAACAAACTCATATAGGAACTTGGAGCC
rJMFF018B22- GCAAACTACATGAACTGAAAATAGAACAAAATTAACAAACTCATATAGGAACTTGGAGCC
JMFF018B22+ GCAAACTACATGAACTGAAAATAGAACAAAATTAACAAACTCATATAGGAACTTGGAGCC
____________________________________________________________
consensus GCAAACTACATGAACTGAAAATAGAACAAAATTAACAAACTCATATAGGAACTTGGAGCC
. : . : . : . : . : . :
rJMSF042G16- CTCTAGATGGGTGTCCATTGATGGATGATCTATTCTCCCGGTGCTGAGACACCTTGCTTC
JMSF042G16+ CTCTAGATGGGTGTCCATTGATGGATGATCTATTCTCCCGGTGCTGAGACACCTTGCTTC
JMFN045D11+ CTCTAGATGGGTGTCCATTGATGGATGATCTATTCTCCCGGTGCTGAGACACCTTGCTTC
JMFS039A02+ CTCTAGATGGGTGTCCATTGATGGATGATCTATTCTCCCGGTGCTGAGACACCTTGCTTC
rJMFF018B22- CTCTAGATGGGTGTCCATTGATGGATGATCTATTCTCCCGGTGCTGAGACACCTTGCTTC
JMFF018B22+ CTCTAGATGGGTGTCCATTGATGGATGATCTATTCTCCCGGTGCTGAGACACCTTGCTTC
____________________________________________________________
consensus CTCTAGATGGGTGTCCATTGATGGATGATCTATTCTCCCGGTGCTGAGACACCTTGCTTC
. : . : . : . : . : . :
rJMSF042G16- AGCCTTTCCCTCTTCATCTTCTTCTTGGAGACTGGCTTCTTCTTCTTAGGGCCAAGTGTC
JMSF042G16+ AGCCTTTCCCTCTTCATCTTCTTCTTGGAGACTGGCTTCTTCTTCTTAGGGCCAAGTGTC
JMFN045D11+ AGCCTTTCCCTCTTCATCTTCTTCTTGGAGACTGGCTTCTTCTTCTTAGGGCCAAGTGTC
JMFS039A02+ AGCCTTTCCCTCTTCATCTTCTTCTTGGAGACTGGCTTCTTCTTCTTAGGGCCAAGTGTC
rJMFF018B22- AGCCTTTCCCTCTTCATCTTCTTCTTGGAGACTGGCTTCTTCTTCTTAGGGCCAAGTGTC
JMFF018B22+ AGCCTTTCCCTCTTCATCTTCTTCTTGGAGACTGGCTTCTTCTTCTTAGGGCCAAGTGTC
____________________________________________________________
consensus AGCCTTTCCCTCTTCATCTTCTTCTTGGAGACTGGCTTCTTCTTCTTAGGGCCAAGTGTC
. : . : . : . : . : . :
rJMSF042G16- TTCTGTGCATACATGTATAGGAAGTAGTTTCCAACAAGGAATGCCAACACAAGTCCACCA
JMSF042G16+ TTCTGTGCATACATGTATAGGAAGTAGTTTCCAACAAGGAATGCCAACACAAGTCCACCA
JMFN045D11+ TTCTGTGCATACATGTATAGGAAGTAGTTTCCAACAAGGAATGCCAACACAAGTCCACCA
JMFS039A02+ TTCTGTGCATACATGTATAGGAAGTAGTTTCCAACAAGGAATGCCAACACAAGTCCACCA
rJMFF018B22- TTCTGTGCATACATGTATAGGAAGTAGTTTCCAACAAGGAATGCCAACACAAGTCCACCA
JMFF018B22+ TTCTGTGCATACATGTATAGGAAGTAGTTTCCAACAAGGAATGCCAACACAAGTCCACCA
____________________________________________________________
consensus TTCTGTGCATACATGTATAGGAAGTAGTTTCCAACAAGGAATGCCAACACAAGTCCACCA
. : . : . : . : . : . :
rJMSF042G16- ATCACAAGCAACACAATCAATCCTGGGTTCAATCCCTTGCCTGTGACAACGTTTTTCATT
JMSF042G16+ ATCACAAGCAACACAATCAATCCTGGGTTCAATCCCTTGCCTGTGACAACGTTTTTCATT
JMFN045D11+ ATCACAAGCAACACAATCAATCCTGGGTTCAATCCCTTGCCTGTGACAACGTTTTTCATT
JMFS039A02+ ATCACAAGCAACACAATCAATCCTGGGTTCAATCCCTTGCCTGTGACAACGTTTTTCATT
rJMFF018B22- ATCACAAGCAACACAATCAATCCTGGGTTCAATCCCTTGCCTGTGACAACGTTTTTCATT
JMFF018B22+ ATCACAAGCAACACAATCAATCCTGGGTTCAATCCCTTGCCTGTGACAACGTTTTTCATT
____________________________________________________________
consensus ATCACAAGCAACACAATCAATCCTGGGTTCAATCCCTTGCCTGTGACAACGTTTTTCATT
. : . : . : . : . : . :
rJMSF042G16- GGATCGAAAGACGGAGGAACATGCTGATCTG
JMSF042G16+ GGATCGAAAGACGGAGGAACATGCTGATCTG
JMFN045D11+ GGATCGAAAGACGGAGGAACATGCTGATCTGCAAACTCTTCTTCGTAATCCATAGCTGAG
JMFS039A02+ GGATCGAAAGACGGAGGAACATGCTGATCTGCAAACTCTTCTTCGTAATCCATAGCTGAG
rJMFF018B22- GGATCGAAAGACGGAGGAACATGCTGATCTGATTATCGTCCCTCTTCTTAAGCCACTCAA
JMFF018B22+ GGATCGAAAGACGGAGGAACATGCTGATCTGATTATCGTCCCTCTTCTTAAGCCACTCAA
____________________________________________________________
consensus GGATCGAAAGACGGAGGAACATGCTGATCTGATTATCGTCCCTCTTCTTAAGCCACTCAA
. : . : . : . : . : . :
JMFN045D11+ AGGAACGA
JMFS039A02+ AGGAACGA
rJMFF018B22- ATCGCAGTGCTTATGATCCTTTTTCTTGTCACAGGCCAATATGTATAGTCCTCCCCTCAA
JMFF018B22+ ATCGCAGTGCTTATGATCCTTTTTCTTGTCACAGGCCAATATGTATAGTCCTCCCCTCAA
____________________________________________________________
consensus ATCGCAGTGCTTATGATCCTTTTTCTTGTCACAGGCCAATATGTATAGTCCTCCCCTCAA