| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017P14 | Sequence | 520 | 000090 (5) | ref|XP_002523830.1| | 1e-78 | 40S ribosomal protein S14, putative [Ricinus communis] gb|EEF38556.1| 40S riboso | 709 | 000090 (5) | ref|XP_002523830.1| | 2e-77 | 40S ribosomal protein S14, putative [Ricinus communis] gb|EEF38556.1| 40S riboso |
| JMFN025M06 | Sequence | 638 | 000090 (5) | ref|XP_002523830.1| | 2e-80 | 40S ribosomal protein S14, putative [Ricinus communis] gb|EEF38556.1| 40S riboso | |||||
| JMFN037F09 | Sequence | 606 | 000090 (5) | ref|XP_002523830.1| | 1e-80 | 40S ribosomal protein S14, putative [Ricinus communis] gb|EEF38556.1| 40S riboso | |||||
| JMFN039B02 | Sequence | 629 | 000090 (5) | ref|XP_002523830.1| | 3e-80 | 40S ribosomal protein S14, putative [Ricinus communis] gb|EEF38556.1| 40S riboso | |||||
This contig is upended
. : . : . : . : . : . :
JMFN037F09+ GAAGTTT
____________________________________________________________
consensus GAAGTTT
. : . : . : . : . : . :
JMFN037F09+ TTGGTGAGAGTGAGCTACAAAAACGTCTAAACATTAAAGTAAAACAAAAACTCTTCCAGG
____________________________________________________________
consensus TTGGTGAGAGTGAGCTACAAAAACGTCTAAACATTAAAGTAAAACAAAAACTCTTCCAGG
. : . : . : . : . : . :
JMFN025M06+ GGAATTACAGCCTCCTTCCCCTTC
JMFN039B02+ GGAATTACAGCCTCCTTCCCCTTC
JMFN037F09+ ACTTGAAGTTGCAACCATTTGGAGAGAGTATAAAATGGAATTACAGCCTCCTTCCCCTTC
rJMFF017P14- GGAATTACAGCCTCCTTCCCCTTC
JMFF017P14+ TGAGAGAGTATAAAATGGAATTACAGCCTCCTTCCCCTTC
____________________________________________________________
consensus ACTTGAAGTTGCAACCATTTTGAGAGAGTATAAAATGGAATTACAGCCTCCTTCCCCTTC
. : . : . : . : . : . :
JMFN025M06+ TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
JMFN039B02+ TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
JMFN037F09+ TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
rJMFF017P14- TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
JMFF017P14+ TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
____________________________________________________________
consensus TACCACCTTTTCTACGAGTACTGTCAGTGGGAATTGGAGTAACATCCTCTATGCGACCAA
. : . : . : . : . : . :
JMFN025M06+ TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
JMFN039B02+ TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
JMFN037F09+ TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
rJMFF017P14- TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
JMFF017P14+ TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
____________________________________________________________
consensus TTTTCATGCCAGATCGAGCAAGGGCTCTGAGAGCAGACTGGGCACCTGGACCAGGAGTCT
. : . : . : . : . : . :
JMFN025M06+ TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
JMFN039B02+ TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
JMFN037F09+ TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
rJMFF017P14- TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
JMFF017P14+ TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
____________________________________________________________
consensus TTGTCTTGTTACCTCCTGTAGCCCTGAGCTTAATGTGAAGGGCAGTGATTCCAAGTTCCT
. : . : . : . : . : . :
JMFN025M06+ TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
JMFN039B02+ TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
JMFN037F09+ TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
rJMFF017P14- TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
JMFF017P14+ TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
____________________________________________________________
consensus TGCATCGCTGAGTGACATCCTGGGCTGCAAGCATAGCTGCATATGGAGAAGATTCATCCC
. : . : . : . : . : . :
JMFN025M06+ TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTCTCTCCCAGATAAAT
JMFN039B02+ TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTCTCTCCCAGATAAAT
JMFN037F09+ TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTCTCTCCCAGATAAAT
rJMFF017P14- TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTATCTCCCAGATAAAT
JMFF017P14+ TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTATCTCCCAGATAAAT
____________________________________________________________
consensus TGTCAGCCTTCACCTTCATGCCCCCAGTAATGCGAACCAATGTTTCTCTCCCAGATAAAT
. : . : . : . : . : . :
JMFN025M06+ CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGCAACACCAAAAACTA
JMFN039B02+ CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGCAACACCAAAAACTA
JMFN037F09+ CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGCAACACCAAAAACTA
rJMFF017P14- CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGGAACACCAAAAACTA
JMFF017P14+ CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGGAACACCAAAAACTA
____________________________________________________________
consensus CAGTTACGTGTATGAATGTATCATTGAACGAGGCAAAAATGTGGGGAACACCAAAAACTA
. : . : . : . : . : . :
JMFN025M06+ ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
JMFN039B02+ ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
JMFN037F09+ ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
rJMFF017P14- ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
JMFF017P14+ ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
____________________________________________________________
consensus ATTCTCCCTCACGTATGGCGGGTCCGAGGGTAACATTCTCCTCCTTGGGCTCCCTGGTCT
. : . : . : . : . : . :
JMFN025M06+ TTCTCTTAGACATGGCTCTGGGTTGATTAGGATGGAGGACAGAGTTGCTAGCAAAGCTT
JMFN039B02+ TTCTCTTAGACATGGCTCTGGGTTGATTAGGATGGAGGACAG
JMFN037F09+ TTCTCTTAGACATGGCTCTGGGTTGATTAGGATGGAGGACAGAGTTGCTAGCAAAGCTT
rJMFF017P14- TTCTCTTAGACATGGCT
JMFF017P14+ TTCTCTTAGACATGGCTCTGGGTTGATTAGGATGGAGGACAGAGTTGCTAGCAAAGCTTC
____________________________________________________________
consensus TTCTCTTAGACATGGCTCTGGGTTGATTAGGATGGAGGACAGAGTTGCTAGCAAAGCTTC