Contig 000084:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF035A10-                                                                     C
                      ____________________________________________________________
consensus                                                                        C
 
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rJMSF035A10-          AAAAAGCTACATGGAGATCACATGGAAATGGCACAAGAAATTTACATTTAAAACAAACTT
                      ____________________________________________________________
consensus             AAAAAGCTACATGGAGATCACATGGAAATGGCACAAGAAATTTACATTTAAAACAAACTT
 
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rJMSF035A10-          CAGGGAGCTTTTGTTACTTCCACTCCATTATTCCAAGTGAACAAATATTCAGAGAAGAGC
                      ____________________________________________________________
consensus             CAGGGAGCTTTTGTTACTTCCACTCCATTATTCCAAGTGAACAAATATTCAGAGAAGAGC
 
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rJMSF035A10-          GGGAAGCCCAAACACCAACACACTATAGATCGGTCATCAACTGCGGGGGCCATATCTCAC
                      ____________________________________________________________
consensus             GGGAAGCCCAAACACCAACACACTATAGATCGGTCATCAACTGCGGGGGCCATATCTCAC
 
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rJMSF035A10-          TTGCCACCTAACGTTGGGAATTGTCCGGGATCTTCTATGGAAGGGGCATCCATATCAATG
                      ____________________________________________________________
consensus             TTGCCACCTAACGTTGGGAATTGTCCGGGATCTTCTATGGAAGGGGCATCCATATCAATG
 
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rJMFF012K13-                                TATATCCTCTACCACGCCCACGACCCCTACCACGACNA
rJMSF035A10-          TTGTTCATTGCATCACCTCCTCTATATCCTCTACCACGCCCACGACCCCTACCACGACCA
                      ____________________________________________________________
consensus             TTGTTCATTGCATCACCTCCTCTATATCCTCTACCACGCCCACGACCCCTACCACGACCA
 
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rJMFF012K13-          CCATAATACCTCTCACCCTNNNCAGGCTTCAAAANCTCNTTAATGNTGANAGAGTTNNTG
rJMSF035A10-          CCATAGTACCTCTCACCCTCAGCAGGCTTCAAAAACTCATTAATGCTGACAGACTTTTTG
                      ____________________________________________________________
consensus             CCATAGTACCTCTCACCCTCAGCAGGCTTCAAAAACTCATTAATGCTGACAGAGTTTTTG
 
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rJMFF012K13-          GACTTCTCGNCCTTCTCCANAGACTCTTTTCACTNATCCTTCTCA               
rJMSF035A10-          GCCTTCTCTTCCTTCTCCAAAGACTCTTTTCTCTTATCCTTCTCAGAACCCAATTTTATG
                      ____________________________________________________________
consensus             GCCTTCTCTTCCTTCTCCAAAGACTCTTTTCTCTTATCCTTCTCAGAACCCAATTTTATG
 
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rJMSF035A10-          AAGATATCATCAGCGTTTTTCTTCTTGGAAATCTGTTGCATAGAATCAAACTCACTGGCA
                      ____________________________________________________________
consensus             AAGATATCATCAGCGTTTTTCTTCTTGGAAATCTGTTGCATAGAATCAAACTCACTGGCA
 
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rJMSF035A10-          TCGACCTTCCTTCCGGACCTTTCCTCAGTTTTAAGTGCCTGCAGTGCCTTCCTCTTTTCC
                      ____________________________________________________________
consensus             TCGACCTTCCTTCCGGACCTTTCCTCAGTTTTAAGTGCCTGCAGTGCCTTCCTCTTTTCC
 
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rJMSF035A10-          TCCAACACCTTCTCATATTCTTCTAGAGTCATCTCCTTATCTTCAGGTTCCTTCTCCTCA
                      ____________________________________________________________
consensus             TCCAACACCTTCTCATATTCTTCTAGAGTCATCTCCTTATCTTCAGGTTCCTTCTCCTCA
 
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rJMSF035A10-          GCTTCAGTACTAGGAGGTTCCTTGTTTGCTTCCGTTTCTCCCTCTTCTCTTGTAGGCTTC
                      ____________________________________________________________
consensus             GCTTCAGTACTAGGAGGTTCCTTGTTTGCTTCCGTTTCTCCCTCTTCTCTTGTAGGCTTC
 
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rJMSF035A10-          TCCACATTTTGAGTTTTCTCAACTTCATTAACTTCTGTCATGACAGCAAGCTAATCTGTT
JMFS086A05+              ACATTTTGAGTTTTCTCAACTTCATTAACTTCTGTCATGACAGCAAGCTCATCTGTT
                      ____________________________________________________________
consensus             TCCACATTTTGAGTTTTCTCAACTTCATTAACTTCTGTCATGACAGCAAGCTCATCTGTT
 
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rJMSF035A10-          TCAGTCCCCCAATTTCCTCGTCCAGATCCTTCCCGTTT                      
JMFS086A05+           TCAGTCCCCCAATTTCCTCGTCCAGATCCTTCCCGTTTTAAGTCAGAGCCGCGACCAGTT
JMSF035A10+                                                    GTCAGAGCCGCGACCAGTT
                      ____________________________________________________________
consensus             TCAGTCCCCCAATTTCCTCGTCCAGATCCTTCCCGTTTTAAGTCAGAGCCGCGACCAGTT
 
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JMFS086A05+           CCGCTTCTGCGATCAAAGACTCTACGAGGCCGGTCACCATCAGCTGTATCACCATCACCA
JMSF035A10+           CCGCTTCTGCGATCAAAGACTCTACGAGGCCGGTCACCATCAGCTGTATCACCATCACCA
                      ____________________________________________________________
consensus             CCGCTTCTGCGATCAAAGACTCTACGAGGCCGGTCACCATCAGCTGTATCACCATCACCA
 
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JMFS086A05+           AACCCACCTCGGCGACCACCACGGAAACCTCCACGAGGTCCACCATAGCCGCCACCACGT
JMSF035A10+           AACCCACCTCGGCGACCACCACGGAAACCTCCACGAGGTCCACCATAGCCGCCACCACGT
                      ____________________________________________________________
consensus             AACCCACCTCGGCGACCACCACGGAAACCTCCACGAGGTCCACCATAGCCGCCACCACGT
 
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JMFS086A05+           CTTTCTGAAGGTTTTCCAGAATCTGCCTCTTCAGGTGGAGCACTACCTCCAGAAAATTCC
JMSF035A10+           CTTTCTGAAGGTTTTCCAGAATCTGCCTCTTCAGGTGGAGCACTACCTCCAGAAAATTCC
JMFF017D10+                                          CAGGTGGAGCACTACCTCCAGAAAATTCC
                      ____________________________________________________________
consensus             CTTTCTGAAGGTTTTCCAGAATCTGCCTCTTCAGGTGGAGCACTACCTCCAGAAAATTCC
 
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JMFS086A05+           CTGCTACCAAATGTACTCCAATTGTTGGTATTTTCCTTGTCAAACCCTGCACCACCAACA
JMSF035A10+           CTGCTACCAAATGTACTCCAATTGTTGGTATTTTCCTTGTCAAACCCTGCACCACCACCA
JMFF012K13+                                  GTTGGTATTTTCCTTGTCAAACCCTGCACCACCACCA
JMFF017D10+           CTGCTACCAAATGTACTCCAATTGTTGGTATTTTCCTTGTCAAACCCTGCACCACCACCA
                      ____________________________________________________________
consensus             CTGCTACCAAATGTACTCCAATTGTTGGTATTTTCCTTGTCAAACCCTGCACCACCACCA
 
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JMFS086A05+           CGACCACGGCCACGACCTCGCCCACCACGGCCCCCACGTCCAGGTTCAGTTTTTGCCTCT
JMSF035A10+           CGACCACGGCCACGACCTCGCCCACCACGGCCCCCACGTCCAGGTTCAGTTTTTGCCTCT
JMFF012K13+           CGACCACGGCCACGACCTCGCCCACCACGGCCCCCACGTCCAGGTTCAGTTTTTGCCTCT
JMFF017D10+           CGACCACGGCCACGACCTCGCCCACCACGGCCCCCACGTCCAGGTTCAGTTTTTGCCTCT
                      ____________________________________________________________
consensus             CGACCACGGCCACGACCTCGCCCACCACGGCCCCCACGTCCAGGTTCAGTTTTTGCCTCT
 
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JMFS086A05+           CTTACAGCTTCAGCCGGGGAAAGAGGCTTGGAGGGGAGCTTAGCCGGCGGCTTAGCCTGT
JMSF035A10+           CTTACAGCTTCAGCCGGGGAAAGAGGCTTGGAGGGGAGCTTAGCCGGCGGCTTAGCCTGT
JMFF012K13+           CTTACAGCTTCAGCCGGGGAAAGAGGCTTGGAGGGGAGCTTAGCCGGCGGCTTAGCCTGT
JMFF017D10+           CTTACAGCTTCAGCCGGGGAAAGAGGCTTGGAGGGGAGCTTAGCCGGCGGCTTAGCCTGT
                      ____________________________________________________________
consensus             CTTACAGCTTCAGCCGGGGAAAGAGGCTTGGAGGGGAGCTTAGCCGGCGGCTTAGCCTGT
 
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JMFS086A05+           TGCTGCGGCTTCTGAGCGGTGGAAGGTTGCGCTTTCTTTGCCGGCGCGACCTTAGCCACC
JMSF035A10+           TGCTGCGGCTTCTGAGCGGTGGAAGGTTGCGCTTTCTTTGCCGGCGCGACCTTAGCCACC
JMFF012K13+           TGCTGCGGCTTCTGAGCGGTGGAAGGTTGCGCTTTCTTTGCCGGCGCGACCTTAGCCACC
JMFF017D10+           TGCTGCGGCTTCTGAGCGGTGGAAGGTTGCGCTTTCTTTGCCGGCGCGACCTTAGCCACC
                      ____________________________________________________________
consensus             TGCTGCGGCTTCTGAGCGGTGGAAGGTTGCGCTTTCTTTGCCGGCGCGACCTTAGCCACC
 
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JMFS086A05+           AGCTGCGTCGGGTCCTCGGCATCATCATCGCCCAACAAATCAAAAGGGTTCAAATCCGCC
JMSF035A10+           AGCTGCGTCGGGTCCTCGGCATCATCATCGCCCAACAAATCAAAAGGGTTCAAATCCGCC
JMFF012K13+           AGCTGCGTCGGGTCCTCGGCATCATCATCGCCCAACAAATCAAAAGGGTTCAAATCCGCC
JMFF017D10+           AGCTGCGTCGGGTCCTCGGCATCATCATCGCCCAACAAATCAAAAGGGTTCAAATCCGCC
                      ____________________________________________________________
consensus             AGCTGCGTCGGGTCCTCGGCATCATCATCGCCCAACAAATCAAAAGGGTTCAAATCCGCC
 
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JMFS086A05+           ATTTCTAAACGA                                                
JMSF035A10+           ATTTCTAAACGACAGACCGCTTTCAGGCTTTCAGATAATGAAATGAACCCCTAACACCCA
JMFF012K13+           ATTTCTAAACGACAGACCGCTTTCAGGCTTTCAGATAATGAAATGAACCCCTAACACCCA
JMFF017D10+           ATTTCTAAACGACAGACCGCTTTCAGGCTTTCAGATAATGAAATGAACCCCTAACACCCA
                      ____________________________________________________________
consensus             ATTTCTAAACGACAGACCGCTTTCAGGCTTTCAGATAATGAAATGAACCCCTAACACCCA
 
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JMSF035A10+           CCCCAGTAGAAAACCTTAGAACGACAGTATACCCATAATCGGATCTATGTACTCCACACT
JMFF012K13+           CCCCAGTAGAAAACCTTAGAACGACAGTATACCCATAATCGGATCTATGTACTCCACACT
JMFF017D10+           CCCCAGTAGAAAACCTTAGAACGACAGTATACCCATAATCGGATCTATGTACTCCACACT
                      ____________________________________________________________
consensus             CCCCAGTAGAAAACCTTAGAACGACAGTATACCCATAATCGGATCTATGTACTCCACACT
 
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JMSF035A10+           AGGATAAAAAGTGTAGAAAGGTTTGGCGAGAGAAAATAAAAGGGTCT             
JMFF012K13+           AGGATAAAAAGTGTAGAAAGGTTTGGCGAGAGAAAATAAAAGGGTCTGGTGAAACCCTAG
JMFF017D10+           AGGATAAAAAGTGTAGAAAGGTTTGGCGAGAGAAAATAAAAGGGTCTGGTGAAACCCTAG
                      ____________________________________________________________
consensus             AGGATAAAAAGTGTAGAAAGGTTTGGCGAGAGAAAATAAAAGGGTCTGGTGAAACCCTAG
 
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JMFF012K13+           CCGC                                                        
JMFF017D10+           CCGCAACGCAGGGAGGGGATATAGAACTAGATAAGTGTGTACTGTGTAGAGTGAACAGGG
                      ____________________________________________________________
consensus             CCGCAACGCAGGGAGGGGATATAGAACTAGATAAGTGTGTACTGTGTAGAGTGAACAGGG