Contig 000071:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015B23Sequence488000071 (3)ref|XP_006341831.1|9e-50PREDICTED: glycine-rich RNA-binding protein 7-like isoform X1 [Solanum tuberosu756000071 (3)ref|XP_006341831.1|1e-22PREDICTED: glycine-rich RNA-binding protein 7-like isoform X1 [Solanum tuberosu
JMSF011J22Sequence272000071 (3)ref|XP_009607130.1|9e-27PREDICTED: glycine-rich RNA-binding protein-like [Nicotiana tomentosiformis]701017094

Alignment

This contig is upended


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rJMFF015B23-                                                       CTCACGAAAGCGAAT
                      ____________________________________________________________
consensus                                                          CTCACGAAAGCGAAT
 
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rJMFF015B23-          AACGAGCAGCGATTGTAGCATTCAAAAGACTGAGACCACATTCAAATGTGCAAATTAAGC
                      ____________________________________________________________
consensus             AACGAGCAGCGATTGTAGCATTCAAAAGACTGAGACCACATTCAAATGTGCAAATTAAGC
 
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rJMFF015B23-          AAGCATAAGATCCCAATCAAACCATACTATCGAACAATTTACGGGACATAGAAGAGTAGA
                      ____________________________________________________________
consensus             AAGCATAAGATCCCAATCAAACCATACTATCGAACAATTTACGGGACATAGAAGAGTAGA
 
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rJMFF015B23-          TTATTAGTGTCATGTTTCATAAGTTCAAAAGATTGATCGACGATTCAGACATGCCAAGAA
                      ____________________________________________________________
consensus             TTATTAGTGTCATGTTTCATAAGTTCAAAAGATTGATCGACGATTCAGACATGCCAAGAA
 
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rJMFF015B23-          GCAGCCCTCCATGATAACATCCAGTTGCAGTAGCATTTCCAACTCTTAATCAGCTCGAGA
                      ____________________________________________________________
consensus             GCAGCCCTCCATGATAACATCCAGTTGCAGTAGCATTTCCAACTCTTAATCAGCTCGAGA
 
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rJMFF015B23-          ACCTCCACTTCGACGATCATACGGCCCAGAACGGTCACGGCTATATCGATCACCACCACC
                      ____________________________________________________________
consensus             ACCTCCACTTCGACGATCATACGGCCCAGAACGGTCACGGCTATATCGATCACCACCACC
 
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rJMFF015B23-          ACCATCCCTGCTGCGACCACCGCCATACCTGTCACCATTCCGGTCAGGTCCATGATGGCC
                      ____________________________________________________________
consensus             ACCATCCCTGCTGCGACCACCGCCATACCTGTCACCATTCCGGTCAGGTCCATGATGGCC
 
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rJMFF015B23-          ACCACTGCCACCACCATACCTGTCATCTTTTCCACCGTACCTCCCGCCCCTACCCCCTCC
                      ____________________________________________________________
consensus             ACCACTGCCACCACCATACCTGTCATCTTTTCCACCGTACCTCCCGCCCCTACCCCCTCC
 
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rJMFF015B23-          TCCTCCACTAGGACATTCCCTAGCGAAGTGTCCTGGCTTACCACACTTGAAGCATTCTCC
                      ____________________________________________________________
consensus             TCCTCCACTAGGACATTCCCTAGCGAAGTGTCCTGGCTTACCACACTTGAAGCATTCTCC
 
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rJMFF015B23-          TCCACCTGACCCCCGTCCACCTCCATAATCACGACTACCACGGTCACGGTCACGGTCACG
JMFF015B23+                                                               CGGTCACG
                      ____________________________________________________________
consensus             TCCACCTGACCCCCGTCCACCTCCATAATCACGACTACCACGGTCACGGTCACGGTCACG
 
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rJMFF015B23-          ACCGCGGTCACGATCACGGTCACGGTCACGATCACGATCACGTGGACGATCATTATCATA
JMFF015B23+           ACCGCGGTCACGATCACGGTCACGGTCACGATCACGATCACGTGGACGATCATTATCATA
                      ____________________________________________________________
consensus             ACCGCGGTCACGATCACGGTCACGGTCACGATCACGATCACGTGGACGATCATTATCATA
 
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rJMFF015B23-          GTCCCTACCTGAACTCTGTTGAGGTTGTGCCTTGTCAACCGTAATGGCGCGACCATCTAA
JMFF015B23+           GTCCCTACCTGAACTCTGTTGAGGTTGTGCCTTGTCAACCGTAATGGCGCGACCATCTAA
                      ____________________________________________________________
consensus             GTCCCTACCTGAACTCTGTTGAGGTTGTGCCTTGTCAACCGTAATGGCGCGACCATCTAA
 
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rJMFF015B23-          ATCAATTCCATTCATTGCATCAATAGCTTCTTCCATGGCTTTCTTCTCATCAAATGCAAC
JMSF011J22+                                                   TTCTTCTCATCAAATGCAAC
JMFF015B23+           ATCAATTCCATTCATTGCATCAATAGCTTCTTCCATGGCTTTCTTCTCATCAAATGCAAC
                      ____________________________________________________________
consensus             ATCAATTCCATTCATTGCATCAATAGCTTCTTCCATGGCTTTCTTCTCATCAAATGCAAC
 
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rJMFF015B23-          AAAACCAAACCCTTTGGACCG                                       
JMSF011J22+           AAAACCAAACCCTTTGGACCGACCAGAAAACTTGTCAACAACAACCTTTGCCTCAACAAG
JMFF015B23+           AAAACCAAACCCTTTGGACCGACCAGAAAACTTGTCAACAACAACCTTTGCCTCAACAAG
                      ____________________________________________________________
consensus             AAAACCAAACCCTTTGGACCGACCAGAAAACTTGTCAACAACAACCTTTGCCTCAACAAG
 
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JMSF011J22+           ATTTCCAAACTTCCGAAATGCATCTTTTAGAATTTGATCAGATGTTGACCATGACAAGTT
JMFF015B23+           ATTTCCAAACTTCCGAAATGCATCTTTTAGAATTTGATCAGATGTTGACCATGACAAGTT
                      ____________________________________________________________
consensus             ATTTCCAAACTTCCGAAATGCATCTTTTAGAATTTGATCAGATGTTGACCATGACAAGTT
 
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JMSF011J22+           ACCAATGAAACAGCGGTACTCGGAATCCTCCGCCATCTTAGTACAAACTCTTGTTTGCTG
JMFF015B23+           ACCAATGAAACAGCGGTACTCGGAATCCTCCGCCATCTTAGTACAAACTCTTGTTTGCTG
                      ____________________________________________________________
consensus             ACCAATGAAACAGCGGTACTCGGAATCCTCCGCCATCTTAGTACAAACTCTTGTTTGCTG
 
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JMSF011J22+           AGGCTATGAGGTCTGAGCAACTAAGCAGCGAGACAGGCAGCCAGCGACGGTTGAAGATGA
JMFF015B23+           AGGCTATGAGGTCTGAGCAACTAAGCAGCGAGACAGGCAGCCAGCGACGGTTGAAGATGA
                      ____________________________________________________________
consensus             AGGCTATGAGGTCTGAGCAACTAAGCAGCGAGACAGGCAGCCAGCGACGGTTGAAGATGA
 
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JMSF011J22+           AGCCGGTGAC                                                  
JMFF015B23+           AGCCGGTGACTGGCAACAAAATGTCGCGACAGAGGCAGAGCAAATTAGCGAAAGAGCGGT
                      ____________________________________________________________
consensus             AGCCGGTGACTGGCAACAAAATGTCGCGACAGAGGCAGAGCAAATTAGCGAAAGAGCGGT