Contig 000067:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014L22Sequence240000067 (3)824006820 (3)ref|XP_008244461.1|2e-107PREDICTED: RING finger and transmembrane domain-containing protein 1 [Prunus mu
JMFF036I17Sequence113000067 (3)698006820 (3)emb|CBI31155.3|4e-90unnamed protein product [Vitis vinifera]
JMSF012N09Sequence507000067 (3)785006820 (3)ref|XP_008388898.1|1e-86PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Malu

Alignment

This contig is upended


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JMSF012N09+                                    CTAGTGGAAGATGNAAATCCNTCTTTGAGCGTCCG
                      ____________________________________________________________
consensus                                      CTAGTGGAAGATGNAAATCCNTCTTTGAGCGTCCG
 
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JMSF012N09+           AGTTTCCACCGGACGCGTCCATCCTTGAGGATGACCCAACTCTAAACCTAACCCTGCGAG
                      ____________________________________________________________
consensus             AGTTTCCACCGGACGCGTCCATCCTTGAGGATGACCCAACTCTAAACCTAACCCTGCGAG
 
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JMSF012N09+           ATCGAAAATCCGTCGAAGACCCCTTGCGATGATGATGACGACGACAAAGACGATGACGAC
                      ____________________________________________________________
consensus             ATCGAAAATCCGTCGAAGACCCCTTGCGATGATGATGACGACGACAAAGACGATGACGAC
 
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JMSF012N09+           TCCCTTCGAAAAATCAAAACCCTAAAACGAATCCATGAAGGGGAGGCGAAATGTCAAACG
                      ____________________________________________________________
consensus             TCCCTTCGAAAAATCAAAACCCTAAAACGAATCCATGAAGGGGAGGCGAAATGTCAAACG
 
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JMSF012N09+           GAAGAAAATGACCATAGCAATCGGATCTCATACGGCGGGCGGAGAATAGCCAAGGCCGGA
                      ____________________________________________________________
consensus             GAAGAAAATGACCATAGCAATCGGATCTCATACGGCGGGCGGAGAATAGCCAAGGCCGGA
 
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JMSF012N09+           GACGGAAGGCAGAAGCGGCGGTGGACGTGATCGGCGAGCGGCGAAACCGTGAAAGGGAAT
JMFF014L22+             CGGAAGGCAGAAGCGGCGGTGGACGTGATCGNCGAGCGGNGAAACCGTNAAAGGGAAT
                      ____________________________________________________________
consensus             GACGGAAGGCAGAAGCGGCGGTGGACGTGATCGGCGAGCGGCGAAACCGTGAAAGGGAAT
 
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JMSF012N09+           GGGGAAAATTGTGTACGGATTGTTTGCGTTTATGCAGTGCGGTTTCCCTTTCTTGGTTTC
JMFF014L22+           GGGGAAAATTGNGTNCGGATTGTTTGCGTTTATGCAGTGCGGTTTCCCTTTCTTGGTTTC
                      ____________________________________________________________
consensus             GGGGAAAATTGTGTACGGATTGTTTGCGTTTATGCAGTGCGGTTTCCCTTTCTTGGTTTC
 
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JMSF012N09+           TGGCTACCTCCGTGGGAGAGAGCGAGGAAAACAAAGAGGAGGGAAGGGAGAGGGAGAGGG
JMFF036I17+           TGGCTACCTCCGTGGGAGAGAGCGAGGANANCAAAGAGGAGGGAAGGGAGAGGGAGAGGG
JMFF014L22+           TGGCTACCTCCGTGGGAGAGAGCGAGGAAAACAAAGAGGAGGGAAGGGAGAGGGAGAGGG
                      ____________________________________________________________
consensus             TGGCTACCTCCGTGGGAGAGAGCGAGGAAAACAAAGAGGAGGGAAGGGAGAGGGAGAGGG
 
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JMSF012N09+           AGAGGGAGAGGGAGAGGGAGATGGAGGCGGAGAGAGAAAGCCAATACGACC         
JMFF036I17+           AGAGGGAGAGGGAGAGGGAGATGGAGGCGGAGAGAGAAAGCCAATACGACC         
JMFF014L22+           AGAGGGAGAGGGAGAGGGAGATGGAGGCGGAGAGAGAAAGCCAATACGACCGTGACATCT
                      ____________________________________________________________
consensus             AGAGGGAGAGGGAGAGGGAGATGGAGGCGGAGAGAGAAAGCCAATACGACCGTGACATCT