Contig 000066:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014J22Sequence500000066 (5)ref|XP_009615606.1|6e-52PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]215008413 (4)
JMFN019K06Sequence642000066 (5)ref|XP_009615606.1|1e-72PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]
JMSF001K02Sequence442000066 (5)ref|XP_009615606.1|9e-41PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]319008413 (4)
JMSF042M12Sequence719000066 (5)ref|XP_009615606.1|8e-86PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]257008413 (4)
JMSF051B17Sequence640000066 (5)ref|XP_009615606.1|1e-73PREDICTED: fasciclin-like arabinogalactan protein 1 [Nicotiana tomentosiformis]266008413 (4)

Alignment

This contig is upended


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JMSF042M12+                                                                    CTC
                      ____________________________________________________________
consensus                                                                      CTC
 
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JMFN019K06+                                                                TTAGCTT
JMSF042M12+           AGCAGGGGAGCCCAAGAGCGTATCGGCGAACAATTTGCAGCCGTGAGCCGACATTAGCTT
                      ____________________________________________________________
consensus             AGCAGGGGAGCCCAAGAGCGTATCGGCGAACAATTTGCAGCCGTGAGCCGACATTAGCTT
 
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JMFN019K06+           AGTGATGTTCGCCTTGCTCGGCTCGGGAGCCGGCGCTTCAGCCGCCGCCGACGGCAGCAC
JMSF051B17+                           CTCGGCTCGGGAGCCGGCGCTTCAGCCGCCGCCGACGGCAGCAC
JMSF042M12+           AGTGATGTTCGCCTTGCTCGGCTCGGGAGCCGGCGCTTCAGCCGCCGCCGACGGCAGCAC
                      ____________________________________________________________
consensus             AGTGATGTTCGCCTTGCTCGGCTCGGGAGCCGGCGCTTCAGCCGCCGCCGACGGCAGCAC
 
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JMFN019K06+           ACTACTGATATGAATGATGGAAATGTTGTAAGGAATCTCCTCAACGGCCTTGACGAAAGT
JMSF051B17+           ACTACTGATATGAATGATGGAAATGTTGTAAGGAATCTCCTCAACGGCCTTGACGAAAGT
JMSF042M12+           ACTACTGATATGAATGATGGAAATGTTGTAAGGAATCTCCTCAACGGCCTTGACGAAAGT
                      ____________________________________________________________
consensus             ACTACTGATATGAATGATGGAAATGTTGTAAGGAATCTCCTCAACGGCCTTGACGAAAGT
 
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JMFN019K06+           TGCGGGGAGTGCTCCTCCGTCGCCCTGAGGGCCGAATCCGACCTTTCCGCCTTTCAGATC
JMSF051B17+           TGCGGGGAGTGCTCCTCCGTCGCCCTGAGGGCCGAATCCGACCTTTCCGCCTTTCAGATC
JMSF042M12+           TGCGGGGAGTGCTCCTCCGTCGCCCTGAGGGCCGAATCCGACCTTTCCGCCTTTCAGATC
JMFF014J22+                                                   ACCTTTCCGCCTTTCAGATC
                      ____________________________________________________________
consensus             TGCGGGGAGTGCTCCTCCGTCGCCCTGAGGGCCGAATCCGACCTTTCCGCCTTTCAGATC
 
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JMFN019K06+           TGTGATATTGACGAATCCGGCGGCGCCGGGAGCGGAGCCAGTGGCTTGGAACATAGTGGC
JMSF051B17+           TGTGATATTGACGAATCCGGCGGCGCCGGGAGCGGAGCCAGTGGCTTGGAACATAGTGGC
JMSF042M12+           TGTGATATTGACGAATCCGGCGGCGCCGGGAGCGGAGCCAGTGGCTTGGAACATAGTGGC
JMSF001K02+                                         AGCGGAGCCAGTGGCTTGGAACATAGTGGC
JMFF014J22+           TGTGATATTGACGAATCCGGCGGCGCCGGGAGCGGAGCCAGTGGCTTGGAACATAGTGGC
                      ____________________________________________________________
consensus             TGTGATATTGACGAATCCGGCGGCGCCGGGAGCGGAGCCAGTGGCTTGGAACATAGTGGC
 
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JMFN019K06+           GGCGAGCGCAGTGCCATTGGTGAGCTGGTGGAGCTTCTTCGCGCCGTAGTAGTCCAGGAG
JMSF051B17+           GGCGAGCGCAGTGCCATTGGTGAGCTGGTGGAGCTTCTTCGCGCCGTAGTAGTCCAGGAG
JMSF042M12+           GGCGAGCGCAGTGCCATTGGTGAGCTGGTGGAGCTTCTTCGCGCCGTAGTAGTCCAGGAG
JMSF001K02+           GGCGAGCGCAGTGCCATTGGTGAGCTGGTGGAGCTTCTTCGCGCCGTAGTAGTCCAGGAG
JMFF014J22+           GGCGAGCGCAGTGCCATTGGTGAGCTGGTGGAGCTTCTTCGCGCCGTAGTAGTCCAGGAG
                      ____________________________________________________________
consensus             GGCGAGCGCAGTGCCATTGGTGAGCTGGTGGAGCTTCTTCGCGCCGTAGTAGTCCAGGAG
 
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JMFN019K06+           CACATGGAGGGAGAGGACATTCTTAATGGTGTAGATTGAGTGGTGCTTGGCGAGCAGATC
JMSF051B17+           CACATGGAGGGAGAGGACATTCTTAATGGTGTAGATTGAGTGGTGCTTGGCGAGCAGATC
JMSF042M12+           CACATGGAGGGAGAGGACATTCTTAATGGTGTAGATTGAGTGGTGCTTGGCGAGCAGATC
JMSF001K02+           CACATGGAGGGAGAGGACATTCTTAATGGTGTAGATTGAGTGGTGCTTGGCGAGCAGATC
JMFF014J22+           CACATGGAGGGAGAGGACATTCTTAATGGTGTAGATTGAGTGGTGCTTGGCGAGCAGATC
                      ____________________________________________________________
consensus             CACATGGAGGGAGAGGACATTCTTAATGGTGTAGATTGAGTGGTGCTTGGCGAGCAGATC
 
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JMFN019K06+           TGCCATGGCGGCGTCATCGACGGCGCAGACAGTGATTGTGTCGCGGCTGTTGATGTCGGC
JMSF051B17+           TGCCATGGCGGCGTCATCGACGGCGCAGACAGTGATTGTGTCGCGGCTGTTGATGTCGGC
JMSF042M12+           TGCCATGGCGGCGTCATCGACGGCGCAGACAGTGATTGTGTCGCGGCTGTTGATGTCGGC
JMSF001K02+           TGCCATGGCGGCGTCATCGACGGCGCAGACAGTGATTGTGTCGCGGCTGTTGATGTCGGC
JMFF014J22+           TGCCATGGCGGCGTCATCGACGGCGCAGACAGTGATTGTGTCGCGGCTGTTGATGTCGGC
                      ____________________________________________________________
consensus             TGCCATGGCGGCGTCATCGACGGCGCAGACAGTGATTGTGTCGCGGCTGTTGATGTCGGC
 
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JMFN019K06+           GGCGAGGTGGGTGAGTGATAAGTAGTGGTTGAAGGTAGAGAACTTCTTGTACTTGGCCAG
JMSF051B17+           GGCGAGGTGGGTGAGTGATAAGTAGTGGTTGAAGGTAGAGAACTCCTTGTACTTGGCCAG
JMSF042M12+           GGCGAGGTGGGTGAGTGATAAGTAGTGGTTGAAGGTAGAGAACTCCTTGTACTTGGCCAG
JMSF001K02+           GGCGAGGTGGGTGAGTGATAAGTAGTGGTTGAAGGTAGAGAACTCCTTGTACTTGGCCAG
JMFF014J22+           GGCGAGGTGGGTGAGTGATAAGTAGTGGTTGAAGGTAGAGAACTCCTTGTACTTGGCCAG
                      ____________________________________________________________
consensus             GGCGAGGTGGGTGAGTGATAAGTAGTGGTTGAAGGTAGAGAACTCCTTGTACTTGGCCAG
 
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JMFN019K06+           AATGGCGGTAATGTTGTAAGCCTCCGTGGCCGACGGCAGGAGCAACAGCGCCAGAGAGAG
JMSF051B17+           AATGGCGGTAATGTTGTAAGCCTCCGTGGCCGACGGCAGGAGCAACAGCGCCAGAGAGAG
JMSF042M12+           AATGGCGGTAATGTTGTAAGCCTCCGTGGCCGACGGCAGGAGCAACAGCGCCAGAGAGAG
JMSF001K02+           AATGGCGGTAATGTTGTAAGCCTCCGTGGCCGACGGCAGGAGCAACAGCGCCAGAGAGAG
JMFF014J22+           AATGGCGGTAATGTTGTAAGCCTCCGTGGCCGACGGCAGGAGCAACAGCGCCAGAGAGAG
                      ____________________________________________________________
consensus             AATGGCGGTAATGTTGTAAGCCTCCGTGGCCGACGGCAGGAGCAACAGCGCCAGAGAGAG
 
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JMFN019K06+           GAACACCGCGGCCGCGGCTGCCGGCGGCGGGAAAAGCTGCATTTTAGCTGTGGGTGTGGA
JMSF051B17+           GAACACCGCGGCCGCGGCTGCCGGCGGCGGGAAAAGCTGCATTTTAGCTGTGGGTGTGGA
JMSF042M12+           GAACACCGCGGCCGCGGCTGCCGGCGGCGGGAAAAGCTGCATTTTAGCTGTGGGTGTGGA
JMSF001K02+           GAACACCGCGGCCGCGGCTGCCGGCGGCGGGAAAAGCTGCATTTTAGCTGTGGGTGTGGA
JMFF014J22+           GAACACCGCGGCCGCGGCTGCCGGCGGCGGGAAAAGCTGCATTTTAGCTGTGGGTGTGGA
                      ____________________________________________________________
consensus             GAACACCGCGGCCGCGGCTGCCGGCGGCGGGAAAAGCTGCATTTTAGCTGTGGGTGTGGA
 
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JMFN019K06+           AAGAAGACGGGACAGGGGTTCCAATACCGGTGGAG                         
JMSF051B17+           AAGAAGACGGGACAGGGGTTCCAATACCGGTGGAGGGGCTGAGAC               
JMSF042M12+           AAGAAGACGGGACAGGGGTTCCAATACCGGTGGAGGGGCTGAGAC               
JMSF001K02+           AAGAAGACGGGACAGGGGTTCCAATACCGGTGGAGGGGCTGAGAC               
JMFF014J22+           AAGAAGACGGGACAGGGGTTCCAATACCGGTGGAGGGGCTGAGACTGCGACTCGCAGAGT
                      ____________________________________________________________
consensus             AAGAAGACGGGACAGGGGTTCCAATACCGGTGGAGGGGCTGAGACTGCGACTCGCAGAGT