Contig 000056:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010O09Sequence579000056 (3)ref|XP_010091922.1|4e-19Prolyl 4-hydroxylase subunit alpha-1 [Morus notabilis] gb|EXB47702.1| Prolyl 4-h744008172 (4)ref|XP_009766050.1|4e-85PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]
JMFF012G11Sequence516000056 (3)ref|XP_010091922.1|8e-39Prolyl 4-hydroxylase subunit alpha-1 [Morus notabilis] gb|EXB47702.1| Prolyl 4-h782008172 (4)ref|XP_009766050.1|1e-114PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]
JMFF046C08Sequence507000056 (3)ref|XP_010091922.1|1e-46Prolyl 4-hydroxylase subunit alpha-1 [Morus notabilis] gb|EXB47702.1| Prolyl 4-h514008172 (4)ref|XP_009766050.1|6e-58PREDICTED: probable prolyl 4-hydroxylase 6 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF010O09+                                                 CATTAAACTTCGGTAACATTCT
                      ____________________________________________________________
consensus                                                   CATTAAACTTCGGTAACATTCT
 
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JMFF010O09+           CATAACCCTTTCCTTTTCCCTTTAACCCGATAACACTGAAAAAAGTAAGGCGGTTTCATG
                      ____________________________________________________________
consensus             CATAACCCTTTCCTTTTCCCTTTAACCCGATAACACTGAAAAAAGTAAGGCGGTTTCATG
 
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JMFF010O09+           AATCTTTTTTCCTCAACTGGTAACAGTAAAAGTAACATGTTTTCCATTTCACATTCTCAC
                      ____________________________________________________________
consensus             AATCTTTTTTCCTCAACTGGTAACAGTAAAAGTAACATGTTTTCCATTTCACATTCTCAC
 
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JMFF010O09+           CAAACAGACATATTTGCTGATAAATTGCAACTGTATTGATTCCCATATTATATGAACCCA
                      ____________________________________________________________
consensus             CAAACAGACATATTTGCTGATAAATTGCAACTGTATTGATTCCCATATTATATGAACCCA
 
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JMFF010O09+           GGAATAAAACACATGCACCAAAGATTGCATTTTTACCAAAAAATAAAACATAAACTAACC
JMFF046C08+                                                                     CC
JMFF012G11+                                                                     CC
                      ____________________________________________________________
consensus             GGAATAAAACACATGCACCAAAGATTGCATTTTTACCAAAAAATAAAACATAAACTAACC
 
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JMFF010O09+           AGATTGGTGAGATGATCACACTCCTCGTGTGTCAAGAATCCTTTATATATAAAAGCCCTG
JMFF046C08+           AGATTGGTGAGATGATCACACTCCTCGTGTGTCAAGAATCCTTTATATATAAAAGCCCTG
JMFF012G11+           AGATTGGTGAGATGATCACACTCCTCGTGTGTCAAGAATCCTTTATATATAAAAGCCCTG
                      ____________________________________________________________
consensus             AGATTGGTGAGATGATCACACTCCTCGTGTGTCAAGAATCCTTTATATATAAAAGCCCTG
 
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JMFF010O09+           GGATGCCAAGAGATTTGGGTGACCCGGGTCGGATCAATAACAGCTGACGAAGCTCCGGTA
JMFF046C08+           GGATGCCAAGAGATTTGGGTGACCCGGGTCGGATCAATAACAGCTGACGAAGCTCCGGTA
JMFF012G11+           GGATGCCAAGAGATTTGGGTGACCCGGGTCGGATCAATAACAGCTGACGAAGCTCCGGTA
                      ____________________________________________________________
consensus             GGATGCCAAGAGATTTGGGTGACCCGGGTCGGATCAATAACAGCTGACGAAGCTCCGGTA
 
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JMFF010O09+           ACCATTCGCAGCACCGGCTCTTTCGTTTTTCCAGCTCCAACCCATCTGGAGGATTGGAGG
JMFF046C08+           ACCATTCGCAGCACCGGCTCTTTCGTTTTTCCAGCTCCAACCCATCTGGAGGATTGGAGG
JMFF012G11+           ACCATTCGCAGCACCGGCTCTTTCGTTTTTCCAGCTCCAACCCATCTGGAGGATTGGAGG
                      ____________________________________________________________
consensus             ACCATTCGCAGCACCGGCTCTTTCGTTTTTCCAGCTCCAACCCATCTGGAGGATTGGAGG
 
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JMFF010O09+           GAGAGATCAGGGAAGACGGATAACAAACAGAGTGAGAACAAAACGAGCCGCCGACAATCC
JMFF046C08+           GAGAGATCAGGGAAGACGGATAACAAACAGAGTGAGAACAAAACGAGCCGCCGACAATCC
JMFF012G11+           GAGAGATCAGGGAAGACGGATAACAAACAGAGTGAGAACAAAACGAGCCGCCGACAATCC
                      ____________________________________________________________
consensus             GAGAGATCAGGGAAGACGGATAACAAACAGAGTGAGAACAAAACGAGCCGCCGACAATCC
 
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JMFF010O09+           ATCCAACAATGCGATTCAGAGAAAGATCTCTCGGTCTCCAATGATGGAAAACACAAAACA
JMFF046C08+           ATCCAACAATGCGATTCAGAGAAAGATCTATCGGTCTCCAATGATGGAAAACACAAAACA
JMFF012G11+           ATCCAACAATGCGATTCAGAGAAAGATCTCTCGGTCTCCAATGATGGAAAACACAAAACA
                      ____________________________________________________________
consensus             ATCCAACAATGCGATTCAGAGAAAGATCTCTCGGTCTCCAATGATGGAAAACACAAAACA
 
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JMFF010O09+           ACAAAAGAATCAA                                               
JMFF046C08+           ACAAAAGAATCAACGAGGTTTCAGTGCTGTGCCTCTGCTACTCCTTTTATATGACTTGAG
JMFF012G11+           ACAAAAGAATCAACGAGGTTTCAGTGCTGTGCCTCTGCTACTCCTTTTATATGACTTGAG
                      ____________________________________________________________
consensus             ACAAAAGAATCAACGAGGTTTCAGTGCTGTGCCTCTGCTACTCCTTTTATATGACTTGAG
 
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JMFF046C08+           GAAGAGAGA                                                   
JMFF012G11+           GAAGAGAGAATCAAACTGCTGAAAACTTCGACTTCGACAAACTCTTCCCTCTTTCCATAT
                      ____________________________________________________________
consensus             GAAGAGAGAATCAAACTGCTGAAAACTTCGACTTCGACAAACTCTTCCCTCTTTCCATAT