Contig 000054:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012D14Sequence452000054 (2)ref|XP_011076578.1|107PREDICTED: transcription elongation factor S-II [Sesamum indicum]804013383 (4)ref|XP_009620752.1|5e-106PREDICTED: transcription elongation factor S-II-like [Nicotiana tomentosiformis
JMFF018J21Sequence551000054 (2)ref|XP_009624142.1|2e-29PREDICTED: transcription elongation factor S-II-like [Nicotiana tomentosiformis838013383 (4)ref|XP_009620752.1|2e-106PREDICTED: transcription elongation factor S-II-like [Nicotiana tomentosiformis

Alignment

This contig is upended


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JMFF018J21+                                                           TTTTTCAGAGTC
                      ____________________________________________________________
consensus                                                             TTTTTCAGAGTC
 
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JMFF018J21+           TGGTTTTGAAACTTTATCTACCTTAGCGGAGGAGTTCGATCTCTGATATCTCTTTGCTTC
                      ____________________________________________________________
consensus             TGGTTTTGAAACTTTATCTACCTTAGCGGAGGAGTTCGATCTCTGATATCTCTTTGCTTC
 
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JMFF018J21+           AACAGGACTAGCAATAGCAGGTTCAGCCTTTTCAGATTTCTCATTTCCAGCATTTCCACT
JMFF012D14+                                       TTTTCAGATTTCTCATTTCCAGCATTTCCACT
                      ____________________________________________________________
consensus             AACAGGACTAGCAATAGCAGGTTCAGCCTTTTCAGATTTCTCATTTCCAGCATTTCCACT
 
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JMFF018J21+           ACTCTTATTTTTCATTGTCTCTTTTACAACTATTTGCTTCCATATCTCAACTATATCAGA
JMFF012D14+           ACTCTTATTTTTCATTGTCTCTTTTACAACTATTTGCTTCCATATCTCAACTATATCAGA
                      ____________________________________________________________
consensus             ACTCTTATTTTTCATTGTCTCTTTTACAACTATTTGCTTCCATATCTCAACTATATCAGA
 
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JMFF018J21+           AGCTAAAGTCTTGATCTTCTCCCTTGGATGTTTTGTTAGCTTCCTAAGACTTTTCCCAAC
JMFF012D14+           AGCTAAAGTCTTGATCTTCTCCCTTGGATGTTTTGTTAGCTTCCTAAGACTTTTCCCAAC
                      ____________________________________________________________
consensus             AGCTAAAGTCTTGATCTTCTCCCTTGGATGTTTTGTTAGCTTCCTAAGACTTTTCCCAAC
 
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JMFF018J21+           CTGAGAGGAGACAAGTACATTATAGCTTACAGGGAACTTTTTCAACTGCTTCAAACCATC
JMFF012D14+           CTGAGAGGAGACAAGTACATTATAGCTTACAGGGAACTTTTTCAACTGCTTCAAACCATC
                      ____________________________________________________________
consensus             CTGAGAGGAGACAAGTACATTATAGCTTACAGGGAACTTTTTCAACTGCTTCAAACCATC
 
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JMFF018J21+           AAGGCACCTCTCTTCCTCCGCATCTGCTCCGTCACCGGCAGCCGCATCGGCAGCCTTTTT
JMFF012D14+           AAGGCACCTCTCTTCCTCCGCATCTGCTCCGTCACCGGCAGCCGCATCGGCAGCCTTTTT
                      ____________________________________________________________
consensus             AAGGCACCTCTCTTCCTCCGCATCTGCTCCGTCACCGGCAGCCGCATCGGCAGCCTTTTT
 
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JMFF018J21+           CACCACCTCGTACAGCTCAACCAGTTCTTTTTCCATTATTTCCTACCGTCTTTCCCCTCC
JMFF012D14+           CACCACCTCGTACAGCTCAACCAGTTCTTTTTCCATTATTTCCTACCGTCTTTCCCCTCC
                      ____________________________________________________________
consensus             CACCACCTCGTACAGCTCAACCAGTTCTTTTTCCATTATTTCCTACCGTCTTTCCCCTCC
 
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JMFF018J21+           TGAATTGTCGAGATCGAACGCGAATTGGCGCAGCGCCTACAGCATTTAGCAGCAACGGCG
JMFF012D14+           TGAATTGTCGAGATCGAACGCGAATTGGCGCAGCGCCTACAGCATTTAGCAGCAACGGCG
                      ____________________________________________________________
consensus             TGAATTGTCGAGATCGAACGCGAATTGGCGCAGCGCCTACAGCATTTAGCAGCAACGGCG
 
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JMFF018J21+           CCCCGTGCTACCGATCGAACCCTAGCTTCCGATAACAGCTTAATCTTTCTGTTTACAAC 
JMFF012D14+           CCCCGTGCTACCGATCGAACCCTAGCTTCCGATAACAGCTTAATCTTTCTGTTTACAACT
                      ____________________________________________________________
consensus             CCCCGTGCTACCGATCGAACCCTAGCTTCCGATAACAGCTTAATCTTTCTGTTTACAACT