Contig 000052:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012A24Sequence556000052 (3)ref|XP_009627394.1|3e-25PREDICTED: pectinesterase-like [Nicotiana tomentosiformis]715005527 (3)ref|XP_009627394.1|5e-100PREDICTED: pectinesterase-like [Nicotiana tomentosiformis]
JMFF013M02Sequence620000052 (3)emb|CDP17031.1|8e-37unnamed protein product [Coffea canephora]703005527 (3)ref|XP_009627394.1|2e-97PREDICTED: pectinesterase-like [Nicotiana tomentosiformis]
JMFF045N16Sequence643000052 (3)emb|CDP17031.1|3e-39unnamed protein product [Coffea canephora]588005527 (3)ref|XP_009627394.1|7e-60PREDICTED: pectinesterase-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF045N16+                            GCAGGTAGTTGGTAAGCGTACACCGCAGACATCCAGTTGAGAA
JMFF013M02+                                                   CGCAGACATCCAGTTGAGAA
                      ____________________________________________________________
consensus                              GCAGGTAGTTGGTAAGCGTACACCGCAGACATCCAGTTGAGAA
 
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JMFF045N16+           GCTGGTCGGCGCGATGTTTGAGGGTGTGAAGCTCGGTGTCACCAACAACAGATATAGAAG
JMFF013M02+           GCTGGTCGGCGCGATGTTTGAGGGTGTGAAGCTCGGTGTCACCAACAACAGATATAGAAG
JMFF012A24+                                                       ACAACAGATATAGAAG
                      ____________________________________________________________
consensus             GCTGGTCGGCGCGATGTTTGAGGGTGTGAAGCTCGGTGTCACCAACAACAGATATAGAAG
 
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JMFF045N16+           CTGNAAGGTCATCAATGGCATCTTGGAGCATTTCCTTGCAATCCTCAATGGCCATATGAT
JMFF013M02+           CTTGAAGGTCATCAATGGCATCTTGGAGCATTTCCTTGCAATCCTCAATGGCCATATGAT
JMFF012A24+           CTTGAAGGTCATCAATGGCATCTTGGAGCATTTCCTTGCAATCCTCAATGGCCATATGAT
                      ____________________________________________________________
consensus             CTTGAAGGTCATCAATGGCATCTTGGAGCATTTCCTTGCAATCCTCAATGGCCATATGAT
 
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JMFF045N16+           TGTAAGGGTCGGTGCTCTGTTCAATCTTGGTGTTAACCACAAGCTGGTGGGATTTGTGGA
JMFF013M02+           TGTAAGGGTCGGTGCTCTGTTCAATCTTGGTGTTAACCACAAGCTGGTGGGATTTGTGGA
JMFF012A24+           TGTAAGGGTCGGTGCTCTGTTCAATCTTGGTGTTAACCACAAGCTGGTGGGATTTGTGGA
                      ____________________________________________________________
consensus             TGTAAGGGTCGGTGCTCTGTTCAATCTTGGTGTTAACCACAAGCTGGTGGGATTTGTGGA
 
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JMFF045N16+           CTTCCTCCAGCGTAGCCTTAATAGCAGCAAAAATGAAGTCCTTAGTGGTGGCGGAGTGGT
JMFF013M02+           CTTCCTCCAGCGTAGCCTTAATAGCAGCAAAAATGAAGTCCTTAGTGGTGGCGGAGTGGT
JMFF012A24+           CTTCCTCCAGCGTAGCCTTAATAGCAGCAAAAATGAAGTCCTTAGTGGTGGCGGAGTGGT
                      ____________________________________________________________
consensus             CTTCCTCCAGCGTAGCCTTAATAGCAGCAAAAATGAAGTCCTTAGTGGTGGCGGAGTGGT
 
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JMFF045N16+           TGTTAGCGACGTGAGAGATACTCTTGGCGCATACGTCTTTATACTCGGCGTATTGGCAGA
JMFF013M02+           TGTTAGCGACGTGAGAGATACTCTTGGCGCATACGTCTTTATACTCGGCGTATTGGCAGA
JMFF012A24+           TGTTAGCGACGTGAGAGATACTCTTGGCGCATACGTCTTTATACTCGGCGTATTGGCAGA
                      ____________________________________________________________
consensus             TGTTAGCGACGTGAGAGATACTCTTGGCGCATACGTCTTTATACTCGGCGTATTGGCAGA
 
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JMFF045N16+           ATGTAGTGACAGACTTCATGGAACCTGTGGAAACACCATGATCGCCCTTGCCAGAGGATG
JMFF013M02+           ATGTAGTGACAGACTTCATGGAACCTGTGGAAACACCATGATCGCCCTTGCCAGAGGATG
JMFF012A24+           ATGTAGTGACAGACTTCATGGAACCTGTGGAAACACCATGATCGCCCTTGCCAGAGGATG
                      ____________________________________________________________
consensus             ATGTAGTGACAGACTTCATGGAACCTGTGGAAACACCATGATCGCCCTTGCCAGAGGATG
 
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JMFF045N16+           CATCGTCAACGCCCTGTAAGACCAAAACGGCTCCGCACACAACACCCACCACTAAGATGA
JMFF013M02+           CATCGTCAACGCCCTGTAAGACCAAAACGGCTCCGCACACAACACCCACCACTAAGATGA
JMFF012A24+           CATCGTCAACGCCCTGTAAGACCAAAACGGCTCCGCACACAACACCCACCACTAAGATGA
                      ____________________________________________________________
consensus             CATCGTCAACGCCCTGTAAGACCAAAACGGCTCCGCACACAACACCCACCACTAAGATGA
 
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JMFF045N16+           GGGATACCAAAGTAATGGCTATATTGTTACCCGCCATCTTTCTCCTGGTTATTATTAATT
JMFF013M02+           GGGATACCAAAGTAATGGCTATATTGTTACCCGCCATCTTTCTCCTGGTTATTATTAATT
JMFF012A24+           GGGATACCAAAGTAATGGCTATATTGTTACCCGCCATCTTTCTCCTGGTTATTATTAATT
                      ____________________________________________________________
consensus             GGGATACCAAAGTAATGGCTATATTGTTACCCGCCATCTTTCTCCTGGTTATTATTAATT
 
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JMFF045N16+           AATAACCCACCCCCCTTCTTTCCTTATTTCATTTATTGTTACAGTATGTAGGATCGAAGA
JMFF013M02+           AATAACCCACCCCCCTTCTTTCCTTATTTCATTTATTGTTACAGTATGTAGGATCGAAGA
JMFF012A24+           AATAACCCACCCCCCTTCTTTCCTTATTTCATTTATTGTTACAGTATGTAGGATCGAAGA
                      ____________________________________________________________
consensus             AATAACCCACCCCCCTTCTTTCCTTATTTCATTTATTGTTACAGTATGTAGGATCGAAGA
 
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JMFF045N16+           AGAGAAGAACGATGGGGGGGCGGGGATGTGAGATGATGGGTGGGTTTGGATTATTATATT
JMFF013M02+           AGAGAAGAACGATGGGGGGGCGGGGATGTGAGATGATGGGTGGGTTTGGATTATTATATT
JMFF012A24+           AGAGAAGAACGATGGGGGGGCGGGGATGTGAGATGATGGGTGGGTTTGGATTATTATATT
                      ____________________________________________________________
consensus             AGAGAAGAACGATGGGGGGGCGGGGATGTGAGATGATGGGTGGGTTTGGATTATTATATT