Contig 000042:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006K03Sequence566000042 (2)ref|XP_011075757.1|3e-11PREDICTED: DNA-binding protein SMUBP-2 [Sesamum indicum] ref|XP_011075758.1| PRE762005342 (2)ref|XP_009771939.1|3e-115PREDICTED: DNA-binding protein SMUBP-2 [Nicotiana sylvestris]
JMFF009K04Sequence597000042 (2)685005342 (2)ref|XP_009771939.1|3e-97PREDICTED: DNA-binding protein SMUBP-2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF006K03+                                  AGCAAAATCTATAGCCATGGCTTTCATACCTTGATTA
                      ____________________________________________________________
consensus                                    AGCAAAATCTATAGCCATGGCTTTCATACCTTGATTA
 
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JMFF006K03+           ATCCACGTCACCACGCACTTGCCGAGATCCCTCCGTCCCAGCGGGTCGCCGCTTTGGTAC
                      ____________________________________________________________
consensus             ATCCACGTCACCACGCACTTGCCGAGATCCCTCCGTCCCAGCGGGTCGCCGCTTTGGTAC
 
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JMFF006K03+           AGTGCGGCGACGTTAGCCGGCGTGTTCGTATTTTTCCTTGTTAGCGCCGGCTTCCTTCGT
                      ____________________________________________________________
consensus             AGTGCGGCGACGTTAGCCGGCGTGTTCGTATTTTTCCTTGTTAGCGCCGGCTTCCTTCGT
 
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JMFF006K03+           CCTTGCCGTTCAAACTCAACCGACGAGCTCACTGGGGAATTTTTCAAATTCTGAGAAGTC
JMFF009K04+              TGCCGTTCAAACTCAACCGACGAGCTCACTGGGGAATTTTTCAAATTCTGAGAAGTC
                      ____________________________________________________________
consensus             CCTTGCCGTTCAAACTCAACCGACGAGCTCACTGGGGAATTTTTCAAATTCTGAGAAGTC
 
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JMFF006K03+           TCAACGGGTCCGGGTCCTGGCCCACTACTT-CCCCCGGACTTGCGGCTTTTCCGTTTGGC
JMFF009K04+           TCAACGGGTCCGGGTCCTGGCCCACTACTTCCCCCCGGACTTGCGGCTTTTCCGTTTGGC
                      ____________________________________________________________
consensus             TCAACGGGTCCGGGTCCTGGCCCACTACTTCCCCCCGGACTTGCGGCTTTTCCGTTTGGC
 
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JMFF006K03+           AGTACGGACGGCCTTGGTGCCTCCGCCATTGGAGTTCGCGACCTGGAAGCGGCAATGCGG
JMFF009K04+           AGTACGGACGGCCTTGGTGCCTCCGCCATTGGAGTTCGCGACCTGGAAGCGGCAATGCGG
                      ____________________________________________________________
consensus             AGTACGGACGGCCTTGGTGCCTCCGCCATTGGAGTTCGCGACCTGGAAGCGGCAATGCGG
 
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JMFF006K03+           CAAAGGCGACGCGAACAAGATGGAGCCGCCGCCACGAGAGAAGCTACTGTTCCCGCCGAA
JMFF009K04+           CAAAGGCGACGCGAACAAGATGGAGCCGCCGCCACGAGAGAAGCTACTGTTCCCGCCGAA
                      ____________________________________________________________
consensus             CAAAGGCGACGCGAACAAGATGGAGCCGCCGCCACGAGAGAAGCTACTGTTCCCGCCGAA
 
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JMFF006K03+           CGGAGTAACAGAAGCAAAGAAAGAAGAATGAAGGGAATCCCTCTGACGCCGCACCCTTAT
JMFF009K04+           CGGAGTAACAGAAGCAAAGAAAGAAGAATGAAGGGAATCCCTCTGACGCCGCACCCTTAT
                      ____________________________________________________________
consensus             CGGAGTAACAGAAGCAAAGAAAGAAGAATGAAGGGAATCCCTCTGACGCCGCACCCTTAT
 
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JMFF006K03+           ACCGAGGAAGCTCGATGCGCCGCCGCAGAACACGCACGATGCTTCCATTTCCCCAGTCTT
JMFF009K04+           ACCGAGGAAGCTCGATGCGCCGCCGCAGAACACGCACGATGCTTCCATTTCCCCAGTCTT
                      ____________________________________________________________
consensus             ACCGAGGAAGCTCGATGCGCCGCCGCAGAACACGCACGATGCTTCCATTTCCCCAGTCTT
 
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JMFF006K03+           TAGCGCATACCCGACCCCCCTCACCGGGTATTTAAGCTTTCTCCGGCCAC          
JMFF009K04+           TAGCGCATACCCGACCCCCCTCACCGGGTATTTAAGCTTTCTCCGGCCACAACTTTCAAA
                      ____________________________________________________________
consensus             TAGCGCATACCCGACCCCCCTCACCGGGTATTTAAGCTTTCTCCGGCCACAACTTTCAAA
 
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JMFF009K04+           AAAAACCTAGAGCGGCGGGGTTGCCGCCGGCCGGCAGGACATCAGCGCCTCCCTCGACAT
                      ____________________________________________________________
consensus             AAAAACCTAGAGCGGCGGGGTTGCCGCCGGCCGGCAGGACATCAGCGCCTCCCTCGACAT
 
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JMFF009K04+           GTTGCAAACGGATTGGGCATGGCACACCTCGCCAATGCCGCCCAACATCACAACAGCTAA
                      ____________________________________________________________
consensus             GTTGCAAACGGATTGGGCATGGCACACCTCGCCAATGCCGCCCAACATCACAACAGCTAA
 
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JMFF009K04+           CACTATTATCTTAACGTTGCTTAGCTTCGTGTAAGCCTCCATGATTGTCTCGATCTATAT
                      ____________________________________________________________
consensus             CACTATTATCTTAACGTTGCTTAGCTTCGTGTAAGCCTCCATGATTGTCTCGATCTATAT