Contig 000038:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009B19Sequence418000038 (3)emb|CDX95294.1|2e-71BnaC09g15760D [Brassica napus]489000038 (3)ref|XP_009763137.1|8e-74PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]
JMFN004B08Sequence623000038 (3)ref|XP_009763137.1|3e-104PREDICTED: 60S ribosomal protein L21-1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN004B08+           GCAAAGGCTATATTGTTCAATAAATAAGTAGTACAAAAAGAAGGCGAGTTGAAAACAAAA
                      ____________________________________________________________
consensus             GCAAAGGCTATATTGTTCAATAAATAAGTAGTACAAAAAGAAGGCGAGTTGAAAACAAAA
 
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rJMFF009B19-                                                           CTTAGTATCCA
JMFN004B08+           TTCCAAGAAGGCATCAAACGCTGATTAACTATTCTCATAAAAGATACATCTTAGTATCCA
                      ____________________________________________________________
consensus             TTCCAAGAAGGCATCAAACGCTGATTAACTATTCTCATAAAAGATACATCTTAGTATCCA
 
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rJMFF009B19-          CCCTTGAGATCGTTAACCACATCGTATGGGATGGGTGTAACCGTCTCTAAAGTGGCACCT
JMFN004B08+           CCCTTGAGATCGTTAACCACATCGTATGGGATGGGTGTAACCGTCTCTAAAGTGGCACCT
                      ____________________________________________________________
consensus             CCCTTGAGATCGTTAACCACATCGTATGGGATGGGTGTAACCGTCTCTAAAGTGGCACCT
 
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rJMFF009B19-          TCCACCATAAAACCGGGTTTGGGACCCTGTGGCTGCCGCTTTGTGCTAATCACCTCACCT
JMFN004B08+           TCCACCATAAAACCGGGTTTGGGACCCTGTGGCTGCCGCTTTGTGCTAATCACCTCACCT
                      ____________________________________________________________
consensus             TCCACCATAAAACCGGGTTTGGGACCCTGTGGCTGCCGCTTTGTGCTAATCACCTCACCT
 
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rJMFF009B19-          CTGGCTTTCGCCTCGGCCTTGAGCCGATCATTGTTCTTGATCCTTTCCTTGACCTCCTCG
JMFN004B08+           CTGGCTTTCGCCTCGGCCTTGAGCCGATCATTGTTCTTGATCCTTTCCTTGACCTCCTCG
JMFF009B19+             GGCTTTCGCCTCGGCCTTGAGCCGATCATTGTTCTTGATCCTTTCCTTGACCTCCTCG
                      ____________________________________________________________
consensus             CTGGCTTTCGCCTCGGCCTTGAGCCGATCATTGTTCTTGATCCTTTCCTTGACCTCCTCG
 
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rJMFF009B19-          GTGCACCTGGAAGCTTGAACATGCTCAATGCGGACATGGATCCTCTTCCTGATGATCCTA
JMFN004B08+           GTGCACCTGGAAGCTTGAACATGCTCAATGCGGACATGGATCCTCTTCCTGATGATCCTA
JMFF009B19+           GTGCACCTGGAAGCTTGAACATGCTCAATGCGGACATGGATCCTCTTCCTGATGATCCTA
                      ____________________________________________________________
consensus             GTGCACCTGGAAGCTTGAACATGCTCAATGCGGACATGGATCCTCTTCCTGATGATCCTA
 
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rJMFF009B19-          TTCCCAACCTGTTTGTTGACTTCAACGCCAACGGCGCGCTTGGTGATATTCCAGATACGA
JMFN004B08+           TTCCCAACCTGTTTGTTGACTTCAACGCCAACGGCGCGCTTGGTGATATTCCAGATACGA
JMFF009B19+           TTCCCAACCTGTTTGTTGACTTCAACGCCAACGGCGCGCTTGGTGATATTCCAGATACGA
                      ____________________________________________________________
consensus             TTCCCAACCTGTTTGTTGACTTCAACGCCAACGGCGCGCTTGGTGATATTCCAGATACGA
 
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rJMFF009B19-          CCGGTGCGGNCGTGGTAGAACTTGTGCGGCATGCCCTTGTGCACGGCGCC          
JMFN004B08+           CCGGTGCGGCCGTGGTAGAACTTGTGCGGCATGCCCTTGTGCACGGCGCCGTTGACCTTG
JMFF009B19+           CCGGTGCGGCCGTGGTAGAACTTGTGCGGCATGCCCTTGTGCACGGCGCCGTTGACCTTG
                      ____________________________________________________________
consensus             CCGGTGCGGCCGTGGTAGAACTTGTGCGGCATGCCCTTGTGCACGGCGCCGTTGACCTTG
 
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JMFN004B08+           ATATCGACATAGTCTCCGACGTGGTAGATCCGGAGGTAGGTGGACAGCGGGATAGTTCCG
JMFF009B19+           ATATCGACATAGTCTCCGACGTGGTAGATCCGGAGGTAGGTGGACAGCGGGATAGTTCCG
                      ____________________________________________________________
consensus             ATATCGACATAGTCTCCGACGTGGTAGATCCGGAGGTAGGTGGACAGCGGGATAGTTCCG
 
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JMFN004B08+           CGCTTCCTGAATCCACGGGAGAAGAGATCCCTCGTCCGCGCCCTTACACCGTGACCGGCC
JMFF009B19+           CGCTTCCTGAATCCACGGGAGAAGAGATCCCTCGTCCGCGCCCTTACACCGTGACCGGCC
                      ____________________________________________________________
consensus             CGCTTCCTGAATCCACGGGAGAAGAGATCCCTCGTCCGCGCCCTTACACCGTGACCGGCC
 
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JMFN004B08+           GGCATTTT                                                    
JMFF009B19+           GGCATTTTAGCTCCTTCGTCTNTGCTCTCCGGCTGCTCAGCTCNTGGTGTGTAGATTGAT
                      ____________________________________________________________
consensus             GGCATTTTAGCTCCTTCGTCTNTGCTCTCCGGCTGCTCAGCTCNTGGTGTGTAGATTGAT