Contig 000036:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006C05Sequence576000036 (9)dbj|BAI83441.1|2e-129granule-bound starch synthase I [Ipomoea batatas]765013967 (6)dbj|BAI83435.1|6e-101granule-bound starch synthase I [Ipomoea batatas]
JMFF008O13Sequence490000036 (9)dbj|BAI83441.1|1e-65granule-bound starch synthase I [Ipomoea batatas]682013967 (6)dbj|BAI83435.1|5e-68granule-bound starch synthase I [Ipomoea batatas]
JMFF018C11Sequence572000036 (9)dbj|BAI83441.1|7e-86granule-bound starch synthase I [Ipomoea batatas]768013967 (6)dbj|BAI83435.1|6e-101granule-bound starch synthase I [Ipomoea batatas]
JMFF022M03Sequence532000036 (9)dbj|BAI83441.1|2e-73granule-bound starch synthase I [Ipomoea batatas]514013967 (6)dbj|BAI83436.1|1e-31granule-bound starch synthase I [Ipomoea batatas]
JMFS034B10Sequence507000036 (9)gb|ABW83789.1|3e-63granule bound starch synthase I [Ipomoea batatas]
JMFS089H09Sequence621000036 (9)dbj|BAI83441.1|1e-103granule-bound starch synthase I [Ipomoea batatas]
JMFS136F11Sequence615000036 (9)dbj|BAI83441.1|1e-103granule-bound starch synthase I [Ipomoea batatas]
JMFS158A04Sequence435000036 (9)dbj|BAI83442.1|2e-57granule-bound starch synthase I [Ipomoea batatas]
JMSF022F11Sequence624000036 (9)gb|ABW83783.1|2e-103granule bound starch synthase I [Ipomoea wrightii]770013967 (6)dbj|BAI83435.1|6e-86granule-bound starch synthase I [Ipomoea batatas]

Alignment

This contig is upended


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JMFS034B10+                                                  GAACATCCAATGTAATGATCT
                      ____________________________________________________________
consensus                                                    GAACATCCAATGTAATGATCT
 
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JMFS034B10+           TATACATCGCAGCATAAAGAATGTGCGACCCTCTTTGATTTTCAAGTGGGCCAATAGAAC
                      ____________________________________________________________
consensus             TATACATCGCAGCATAAAGAATGTGCGACCCTCTTTGATTTTCAAGTGGGCCAATAGAAC
 
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JMFS034B10+           CAATCAAAGGAGCATTCTTGTCGACCGGCAAACCAGTAGCCGCTTAAAGAGCTTCGTTCA
                      ____________________________________________________________
consensus             CAATCAAAGGAGCATTCTTGTCGACCGGCAAACCAGTAGCCGCTTAAAGAGCTTCGTTCA
 
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JMFS034B10+           TCATCGGTTTCGCTTGCATAACAGTTGTGATATCATAGTTAACAGCAAGGTACTTGTCGG
                      ____________________________________________________________
consensus             TCATCGGTTTCGCTTGCATAACAGTTGTGATATCATAGTTAACAGCAAGGTACTTGTCGG
 
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JMFS034B10+           TTGCAGGGTTCCACTTTTGGGTATCCATTCCGTTACATAATACCAGTGATGCCACAGTAT
                      ____________________________________________________________
consensus             TTGCAGGGTTCCACTTTTGGGTATCCATTCCGTTACATAATACCAGTGATGCCACAGTAT
 
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JMFS034B10+           CGCGATATGGGTATGCAATTCCACGCCCTTCAGAACGGTAGAAACAAGCTCCTTGGCGTA
                      ____________________________________________________________
consensus             CGCGATATGGGTATGCAATTCCACGCCCTTCAGAACGGTAGAAACAAGCTCCTTGGCGTA
 
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JMFS034B10+           GTTTGGGCTAGCAGTAACAACCCTATCCGTTTCAAGTATTCCAGCTTTCATGCAGTTTAT
                      ____________________________________________________________
consensus             GTTTGGGCTAGCAGTAACAACCCTATCCGTTTCAAGTATTCCAGCTTTCATGCAGTTTAT
 
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JMFS034B10+           CTTTTTCCCCTTCTCAGGCTTATCATATCTGTCAATAAAATCAAAAGAGCCCTTGTACTC
JMFF006C05+                                         GTCAATAAAATCAAAAGAGCCCTTGTACTC
                      ____________________________________________________________
consensus             CTTTTTCCCCTTCTCAGGCTTATCATATCTGTCAATAAAATCAAAAGAGCCCTTGTACTC
 
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JMFS034B10+           GTCCGGCAGATTCAGAAGAGAAAAGTCTGGAGAGGTGAATCTGCCTTGGTAGGGTATGTT
JMFF006C05+           GTCAGGCAGATTCAGAAGAGAAAAGTCTGAAGAGGCGAATCTGCCTTGGTAGGCGATGTT
JMSF022F11+                                                       CTTGGTAGGCGATGTT
                      ____________________________________________________________
consensus             GTCCGGCAGATTCAGAAGAGAAAAGTCTGGAGAGGTGAATCTGCCTTGGTAGGCGATGTT
 
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JMFS034B10+           GTGAAT                                                      
JMFF006C05+           GTGAATGCAGAAAGAAACCTTGGCGTTCATGTAGATTCCTTGCGACTGGTACATGCTTTT
JMSF022F11+           GTGAATGCAGAAAGCAACCTTGGCGTTCATGTAGATTCCTTGCGACTGGTACATGCTTTT
                      ____________________________________________________________
consensus             GTGAATGCAGAAAGCAACCTTGGCGTTCATGTAGATTCCTTGCGACTGGTACATGCTTTT
 
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JMFF006C05+           CAGATAGCACGGAAGGAGAGCGGTGTGCCAATCATTGGCAATGAAAACAAAATCCTCACC
JMSF022F11+           CAGATAGCACGGAAGGAGAGCGGTGTGCCAATCATTGGCAATGAAAACAACATCCTCACC
                      ____________________________________________________________
consensus             CAGATAGCACGGAAGGAGAGCGGTGTGCCAATCATTGGCAATGAAAACAACATCCTCACC
 
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JMFF006C05+           ATAAGGTCCAGTGAAGTATTCGCTGGAGTTAAGATTCAAAACTCTCGGTGCCTCAAGTGC
JMSF022F11+           ATAAGGTCCAGTGAAGTATTCGCTGGAGTTAAGATTCAAAACTCTCGGTGCCTCAAGTGC
                      ____________________________________________________________
consensus             ATAAGGTCCAGTGAAGTATTCGCTGGAGTTAAGATTCAAAACTCTCGGTGCCTCAAGTGC
 
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JMFF006C05+           TGCTTGGCACAACAAACTGAACCGCAACTGGTTGTCCTTGTAATCTTTCCCAGCCATGGG
JMSF022F11+           TGCTTGGCACAACAAACTGAACCGCAACTGGTTGTCCTTGTAATCTTTCCCAGCCATGGG
                      ____________________________________________________________
consensus             TGCTTGGCACAACAAACTGAACCGCAACTGGTTGTCCTTGTAATCTTTCCCAGCCATGGG
 
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JMFF006C05+           GCCATAGAGCTTAGATTCCGTTTTTCCCCAAACCTTCTCCAGGAACATAGGATGATCCAC
JMSF022F11+           GCCATAGAGCTTAGATTCCGTTTTTCCCCAAACCTTCTCCAGGAACATAGGATGATCCAC
JMFS136F11+                         ATTCCGTTTTTCCCCAAACCTTCTCCAGGAACATAGGATGATCCAC
JMFS089H09+                         ATTCCGTTTTTCCCCAAACCTTCTCCAGGAACATAGGATGATCCAC
                      ____________________________________________________________
consensus             GCCATAGAGCTTAGATTCCGTTTTTCCCCAAACCTTCTCCAGGAACATAGGATGATCCAC
 
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JMFF006C05+           AAAAACACGATCAACTCCACGTTTGTATGAATGGAAGAATCGGACAGGTTCAATTCTGTC
JMSF022F11+           AAAAACACGATCAACTCCACGTTTGTATGAATGGAAGAATCGGACAGGTTCAATTCTGTC
JMFS136F11+           AAAAACACGATCAACTCCACGTTTGTATGAATGGAAGAATCGGACAGGTTCAATTCTGTC
JMFS089H09+           AAAAACACGATCAACTCCACGTTTGTATGAATGGAAGAATCGGACAGGTTCAATTCTGTC
JMFF018C11+                               GTTTGTATGAATGGAAGAATCGGACAGGTTCAATTCTGTC
                      ____________________________________________________________
consensus             AAAAACACGATCAACTCCACGTTTGTATGAATGGAAGAATCGGACAGGTTCAATTCTGTC
 
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JMFF006C05+           TCCAACTTGTAGCTCAACAATCACACAGGTATCCCAAGCATCTTTGTACTGGTCATAACG
JMSF022F11+           TCCAACTTGTAGCTCAACAATCACACAGGTATCCCAAGCATCTTTGTACTGGTCATAACG
JMFS136F11+           TCCAACTTGTAGCTCAACAATCACACAGGTATCCCAAGCATCTTTGTACTGGTCATAACG
JMFS089H09+           TCCAACTTGTAGCTCAACAATCACACAGGTATCCCAAGCATCTTTGTACTGGTCATAACG
JMFF018C11+           TCCAACTTGTAGCTCAACAATCACACAGGTATCCCAAGCATCTTTGTACTGGTCATAACG
JMFF022M03+                  TGTAGCTCAACAATCACACAGGTATCCCAAGCATCTTTGTACTGGTCATAACG
JMFF008O13+                                                            TGGTCATAACG
                      ____________________________________________________________
consensus             TCCAACTTGTAGCTCAACAATCACACAGGTATCCCAAGCATCTTTGTACTGGTCATAACG
 
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JMFF006C05+           GGGACACACTGTCATAACCCTATGCCCGCGTGCAGCCAAGGCTGGTGGCAATCCT     
JMSF022F11+           GGGACACACTGTCATAACCCTATGCCCGCGTGCAGCCAAGGCTGGTGGCAATCCTCCAAG
JMFS136F11+           GGGACACACTGTCATAACCCTATGCCCGCGTGCAGCCAAGGCTGGTGGCAATCCTCCAAG
JMFS089H09+           GGGACACACTGTCATAACCCTATGCCCGCGTGCAGCCAAGGCTGGTGGCAATCCTCCAAG
JMFF018C11+           GGGACACACTGTCATAACCCTATGCCCGCGTGCAGCCAAGGCTGGTGGCAATCCTCCAAG
JMFS158A04+                         TAACCCTATGCCCGCGTGCAGCCAAGGCTGGTGGCAATCCTCCAAG
JMFF022M03+           GGGACACACTGTCATAACCCTATGCCCGCGTGCAGCCAAGGCTGGTGGCAATCCTCCAAG
JMFF008O13+           GGGACACACTGTCATAACCCTATGCCCGCGTGCAGCCAAGGNTGGTGGCAATCCTCCAAG
                      ____________________________________________________________
consensus             GGGACACACTGTCATAACCCTATGCCCGCGTGCAGCCAAGGCTGGTGGCAATCCTCCAAG
 
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JMSF022F11+           AACATCTCCAAGTCCACCAGTTTTTGCACCAGGGACCCACCTCACATCCCACAAAGATCA
JMFS136F11+           AACATCTCCAAGTCCACCAG-TTTTGCACCAGGGACCCACCTCACATCCCACAAAGATCA
JMFS089H09+           AACATCTCCAAGTCCACCAG-TTTTGCACCAGGGACCCACCTCACATCCCACAAAGATCA
JMFF018C11+           AACATCTCCAAGTCCACCAG-TTTTGCACCAGGGACCCACCTCACATCCCACAAAGATCA
JMFS158A04+           AACATCTCCAAGTCCACCAG-TTTTGCACCAGGGACCCACCTCACATCCCACAAAGATCA
JMFF022M03+           AACATCTCCAAGTCCACCAG-TTTTGCACCAGGGACCCACCTCACATCCCACAAAGATCA
JMFF008O13+           AACATCTCCAAGTCCACCAG-TTTTGCACCAGGGACCCACCTCACATCCCACAAAGATCA
                      ____________________________________________________________
consensus             AACATCTCCAAGTCCACCAG-TTTTGCACCAGGGACCCACCTCACATCCCACAAAGATCA
 
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JMSF022F11+           AGTTCATCCCTCCTTGTTGTTTACACACAATAGTCCCTGCTGCCATTCCACCCTCATTTT
JMFS136F11+           AGTTCATCCCTCCTTGTTGTTTACACACAATAGTCCCTGCTGCCATTCCACCCTCATTTT
JMFS089H09+           AGTTCATCCCTCCTTGTTGTTTACACACAATAGTCCCTGCTGCCATTCCACCCTCATTTT
JMFF018C11+           AGTTCATCCCTCCTTGTTGTTTACACACAATAGTCCCTGCTGCCATTCCACCCTCATTTT
JMFS158A04+           AGTTCATCCCTCCTTGTTGTTTACACACAATAGTCCCTGCTGCCATTCCACCCTCATTTT
JMFF022M03+           AGTTCATCCCTCCTTGTTGTTTACACACAATAGTCCCTGCTGCCATTCCACCCTCATTTT
JMFF008O13+           AGTTCATCCCTCCTTGTTGTTTACACACAATAGTCCCTGCTGCCATTCCACCCTCATTTT
                      ____________________________________________________________
consensus             AGTTCATCCCTCCTTGTTGTTTACACACAATAGTCCCTGCTGCCATTCCACCCTCATTTT
 
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JMSF022F11+           TCCTCCC                                                     
JMFS136F11+           TCCTCCCATTTTTGCTGGGTTTCTTGGCACTGGTCCTCAATTGTAACATGTCAATCTTGT
JMFS089H09+           TCCTCCCATTTTTGCTGGGTTTCTTGGCACTGGTCCTCAATTGTAACATGTCAATCTTGT
JMFF018C11+           TCCTCCCATTTTTGCTGGGTTTCTTGGCACTGGTCCTCAATTGTAACATGTCAATCTTGT
JMFS158A04+           TCCTCCCATTTTTGCTGGGTTTCTTGGCACTGGTCCTCAATTGTAACATGTCAATCTTGT
JMFF022M03+           TCCTCCCATTTTTGCTGGGTTTCTTGGCACTGGTCCTCAATTGTAACATGTCAATCTTGT
JMFF008O13+           TCCTCCCATTTTTGCTGGGTTTCTTGGCACTGGTCCTCAATTGTAACATGTCAATCTTGT
                      ____________________________________________________________
consensus             TCCTCCCATTTTTGCTGGGTTTCTTGGCACTGGTCCTCAATTGTAACATGTCAATCTTGT
 
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JMFS136F11+           TCACAGATCTCAACCCATTGTGAGTCACAGCTTGGCTCCTCAGGGCTAATTGACCCAACC
JMFS089H09+           TCACAGATCTCAACCCATTGTGAGTCACAGCTTGGCTCCTCAGGGCTAATTGACCCAACC
JMFF018C11+           TCACAAATCTCAACCCATTGTGAGTCACAGCTTGGCTCCTCAGGGCTAATTGACCCAACC
JMFS158A04+           TCACAGATCTCAACCCATTGTGAGTCACAGCTTGGCTCCTCAGGGCTAATTGACCCAACC
JMFF022M03+           TCACAGATCTCAACCCATTGTGAGTCACAGCTTGGCTCCTCAGGGCTAATTGACCCAACC
JMFF008O13+           TCACAGATCTCAACCCATTGTGAGTCACAGCTTGGCTCCTCAGGGCTAATTGACCCAACC
                      ____________________________________________________________
consensus             TCACAGATCTCAACCCATTGTGAGTCACAGCTTGGCTCCTCAGGGCTAATTGACCCAACC
 
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JMFS136F11+           CCACTTTTGATTCTCCAGAAGTGGCACCCCCACCCCCACAGACATGAGAAACAAAGTGTG
JMFS089H09+           CCACTTTTGATTCTCCAGAAGTGGCACCCCCACCCCCACAGACATGAGAAACAAAGTGTG
JMFF018C11+           CCACTTTTGATTCTCCAGAAGTGGCACCCCCACCCCCACAGACATGAGAAACAAAGTGTG
JMFS158A04+           CCACTTTTGATTCTCCAGAAGTGGCACCCCCACCCCCACAGACATGAGAAACAAAGTGTG
JMFF022M03+           CCACTTTTGATTCTCCAGAAGTGGCACCCCCACCCCCACAGACATGAGAAACAAAGTGTG
JMFF008O13+           CCACTTTTGATTCTCCAGAAGTGGCACCCCCACCCCCACAGACATGAGAAACAAAGTGTG
                      ____________________________________________________________
consensus             CCACTTTTGATTCTCCAGAAGTGGCACCCCCACCCCCACAGACATGAGAAACAAAGTGTG
 
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JMFS136F11+           AGGCAGTTATAGTAGCCATCAGTCACACCACACTACACCCGCTTCACTGGAAACTCCGCG
JMFS089H09+           AGGCAGTTATAGTAGCCATCAGTCACACCACACTACACCCGCTTCACTGGAAACTCCGCG
JMFF018C11+           AGGCAGTTATAGTAGCCATCAGTCACACCACACTACACCCGCTTCACTGGAAACTCCGCG
JMFS158A04+           AGGCAGTTATAGTAGCCATCAGTCACACCACACTACACCCGCTTCACTGGAAACTCCGCG
JMFF022M03+           AGGCAGTTATAGTAGCCATCAGTCACACCACACTACACCCGCTTCACTGGAAACTCCGCG
JMFF008O13+           AGGCAGTTATAGTAGCCATCAGTCACACCACACTACACCCGCTTCACTGGAAACTCCGCG
                      ____________________________________________________________
consensus             AGGCAGTTATAGTAGCCATCAGTCACACCACACTACACCCGCTTCACTGGAAACTCCGCG
 
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JMFS136F11+           GCGGATCAACGGCGGTTATAGCAGACTGTG                              
JMFS089H09+           GCGGATCAACGGCGGTTATAGCAGACTGTGGAAGAA                        
JMFF018C11+           GCGGATCAACGGCGGTTATAGCAGACTGTGGAAGAACTGCACGGGTTAGAGGT       
JMFS158A04+           GCGGATCAACGGCGGTTATAGCAGACTGTG                              
JMFF022M03+           GCGGATCAACGGCGGTTATAGCAGACTGTGGAAGAACTGCACGGGTTAGAGGT       
JMFF008O13+           GCGGATCAACGGCGGTTATAGCAGACTGTGGAAGAACTGCACGGGTTAGAGGTGAACAAG
                      ____________________________________________________________
consensus             GCGGATCAACGGCGGTTATAGCAGACTGTGGAAGAACTGCACGGGTTAGAGGTGAACAAG