| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001H11 | Sequence | 501 | 000002 (5) | ref|XP_009618592.1| | 1e-61 | PREDICTED: 50S ribosomal protein L6, chloroplastic [Nicotiana tomentosiformis] | 719 | 000002 (5) | ref|XP_009618592.1| | 5e-119 | PREDICTED: 50S ribosomal protein L6, chloroplastic [Nicotiana tomentosiformis] |
| JMFN038P20 | Sequence | 602 | 000002 (5) | ref|XP_009618592.1| | 3e-63 | PREDICTED: 50S ribosomal protein L6, chloroplastic [Nicotiana tomentosiformis] | |||||
| JMSF034K10 | Sequence | 662 | 000002 (5) | ref|XP_009618592.1| | 3e-104 | PREDICTED: 50S ribosomal protein L6, chloroplastic [Nicotiana tomentosiformis] | 723 | 000002 (5) | ref|XP_009618592.1| | 2e-117 | PREDICTED: 50S ribosomal protein L6, chloroplastic [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF034K10- AATTGAGGGTGTTGTTAA
rJMFF001H11- AAAATTGAGGGTGTTGTTAA
____________________________________________________________
consensus AAAATTGAGGGTGTTGTTAA
. : . : . : . : . : . :
rJMSF034K10- TGCACATCACATGATATACATACATTGAACAAGGGAAAACAACTAACAATGACAGGTAAG
rJMFF001H11- TGCACATCACATGATATACATACATTGAACAAGGGAAAACAACTAACAATGACAGGTAAG
____________________________________________________________
consensus TGCACATCACATGATATACATACATTGAACAAGGGAAAACAACTAACAATGACAGGTAAG
. : . : . : . : . : . :
rJMSF034K10- TTATCACTTCTTCTTTCCAGCTTTACCCTCCTTTCTTCTAATAACTTCATCGGCATACTT
rJMFF001H11- TTATCACTTCTTCTTTCCAGCTTTACCCTCCTTTCTTCTAATAACTTCATCGGCATACTT
____________________________________________________________
consensus TTATCACTTCTTCTTTCCAGCTTTACCCTCCTTTCTTCTAATAACTTCATCGGCATACTT
. : . : . : . : . : . :
rJMSF034K10- CACACCCTTACCTTTATACGGCTCCGGAGGCCTCCATTTCCTAATCGAGGCAGCAAACTG
rJMFF001H11- CACACCCTTACCTTTATACGGCTCCGGAGGCCTCCATTTCCTAATCGAGGCAGCAAACTG
JMSF034K10+ AATCGAGGCAGCAAACTG
____________________________________________________________
consensus CACACCCTTACCTTTATACGGCTCCGGAGGCCTCCATTTCCTAATCGAGGCAGCAAACTG
. : . : . : . : . : . :
rJMSF034K10- ACCGATGGCAGATTTATCGTATCCACTCACAGTGATTCTAGTGTTCTCTTCAACCTTAAC
rJMFF001H11- ACCGATGGCAGATTTATCGTATCCACTCACAGTGATTCTAGTGTTCTCTTCAACCTTAAC
JMSF034K10+ ACCGATGGCAGATTTATCGTATCCACTCACAGTGATTCTAGTGTTCTCTTCAACCTTAAC
JMFN038P20+ TAAC
____________________________________________________________
consensus ACCGATGGCAGATTTATCGTATCCACTCACAGTGATTCTAGTGTTCTCTTCAACCTTAAC
. : . : . : . : . : . :
rJMSF034K10- CTGCAAGCCATCAGGGATTGCCATCCGAACCGGATGAGAGAATCCGAGATTAAGAACTAT
rJMFF001H11- CTGCAAGCCATCAGGGATTGCCATCCGAACCGGATGAGAGAATCCGAGATTAAGAACTAT
JMSF034K10+ CTGCAAGCCATCAGGGATTGCCATCCGAACCGGATGAGAGAATCCGAGATTAAGAACTAT
JMFN038P20+ CTGCAAGCCATCAGGGATTGCCATCCGAACCGGATGAGAGAATCCGAGATTAAGAACTAT
____________________________________________________________
consensus CTGCAAGCCATCAGGGATTGCCATCCGAACCGGATGAGAGAATCCGAGATTAAGAACTAT
. : . : . : . : . : . :
rJMSF034K10- ATCTTTGCCTTCAACCATCGCACGGTACCCTACACCAACCAACTGCAGTTTCTTGTCAAA
rJMFF001H11- ATCTTTGCCTTCAACCATCGCACGGTACCCTACACCAACCAACTGCAGTTTCTTGTCAAA
JMSF034K10+ ATCTTTGCCTTCAACCATCGCACGGTACCCTACACCAACCAACTGCAGTTTCTTGTCAAA
JMFN038P20+ ATCTTTGCCTTCAACCATCGCACGGTACCCTACACCAACCAACTGCAGTTTCTTGTCAAA
JMFF001H11+ CCAACTGCAGTTTCTTGTCAAA
____________________________________________________________
consensus ATCTTTGCCTTCAACCATCGCACGGTACCCTACACCAACCAACTGCAGTTTCTTGTCAAA
. : . : . : . : . : . :
rJMSF034K10- CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
rJMFF001H11- CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
JMSF034K10+ CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
JMFN038P20+ CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
JMFF001H11+ CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
____________________________________________________________
consensus CCCCTTAGATACGCCTACAATCATGTTGTCGGTGAGGGTCCTGAATAAACCATGCATCTC
. : . : . : . : . : . :
rJMSF034K10- GTTAGC-CCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
rJMFF001H11- GTTAGC-CCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
JMSF034K10+ GTTAGC-CCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
JMFN038P20+ GTTAGCTCCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
JMFF001H11+ GTTAGC-CCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
____________________________________________________________
consensus GTTAGC-CCGTCTCGTCTCCATAGCCTTTCTGACCCTAAGCACTCCCGATTCCTCCTTCT
. : . : . : . : . : . :
rJMSF034K10- CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
rJMFF001H11- CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
JMSF034K10+ CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
JMFN038P20+ CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
JMFF001H11+ CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
____________________________________________________________
consensus CTAGCTTTACCTCTCGTGGATAAGTAATACCCAACTCTCCTAGAGGACCTTTAACTTTGA
. : . : . : . : . : . :
rJMSF034K10- AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
rJMFF001H11- AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
JMSF034K10+ AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
JMFN038P20+ AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
JMFF001H11+ AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
____________________________________________________________
consensus AATCTTGTCCTTCCATTTTGATTGTCACATTGGAAGGCACTGGAATTGGTTGCTTACCAA
. : . : . : . : . : . :
rJMSF034K10- TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCANTGGTGAGCT
rJMFF001H11- TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCAATGGTGAGCT
JMSF034K10+ TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCAATGGTGAGCT
JMFN038P20+ TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCAATGGTGAGCT
JMFF001H11+ TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCAATGGTGAGCT
____________________________________________________________
consensus TTCTTGATTCCTTGCATTCCACCGTTTTCCTTACAAAGTTGTTGCGAGCAATGGTGAGCT
. : . : . : . : . : . :
rJMSF034K10- TAAAGAAACGGATTCCACTAGCATCACCA
rJMFF001H11- TAAAGAAACGGATTCCACTAGCATCACCAATGAAATTAGA
JMSF034K10+ TAAAGAAACGGATTCCACTAGCATCACCAATGAAATTAGACCTTAGGTTGCTTGTTGCAA
JMFN038P20+ TAAAGAAACGGATTCCACTAGCATCACCAATGAAATTAGACCTTAGGTTGCTTGTTGCAA
JMFF001H11+ TAAAGAAACGGATTCCACTAGCATCACCAATGAAATTAGACCTTAGGTTGCTTGTTGCAA
____________________________________________________________
consensus TAAAGAAACGGATTCCACTAGCATCACCAATGAAATTAGACCTTAGGTTGCTTGTTGCAA
. : . : . : . : . : . :
JMSF034K10+ AGGTTTTCTTGCGCTGAGTTGTCCCTGCAGATGAAGAAAACCCAAGGGCGGACACTGATG
JMFN038P20+ AGGTTTTCTTGCGCTGAGTTGTCCCTGCAGATGAAGAAAACCCAAGGGCGGACACTGATG
JMFF001H11+ AGGTTTTCTTGCGCTGAGTTGTCCCTGCAGATGAAGAAAACCCAAGGGCGGACACTGATG
____________________________________________________________
consensus AGGTTTTCTTGCGCTGAGTTGTCCCTGCAGATGAAGAAAACCCAAGGGCGGACACTGATG
. : . : . : . : . : . :
JMSF034K10+ AGGAGAGTGTTGCTACTCTCTCCATTGCAAGAAAATGGAGGTTC
JMFN038P20+ AGGAGAGTGTTGCTACTCTCTCCATTGCAAGAAAATGGAGGTTCAAGAGAGAAAGCAA
JMFF001H11+ AGGAGAGTGTTGCTACTCTCTCCATTGCAAGAAAATGGAGGTTCAAGAGAGAAAGCAAGT
____________________________________________________________
consensus AGGAGAGTGTTGCTACTCTCTCCATTGCAAGAAAATGGAGGTTCAAGAGAGAAAGCAAGT