Clone JMSF018O04 [sequences]

contigF:009950 contigR:009950

name	5'-sequence						3'-sequence						length	description
name	rank	score	Evalue	region1	region2	frame	rank	score	Evalue	region1	region2	frame	length	description
emb\|CAE05450.3\|							1	69.3	3e-11	295-642	302-423	-3	1131	OSJNBa0073E02.10 [Oryza sativa Japonica Group]
emb\|CAH67225.1\|							2	68.9	4e-11	295-642	302-423	-3	1087	OSIGBa0145M07.7 [Oryza sativa Indica Group]
gb\|AAU10682.1\|							4	68.9	6e-10	295-645	306-428	-3	1210	putative polyprotein [Oryza sativa Japonica Group]
emb\|CAN81140.1\|							6	65.9	6e-09	295-618	80-193	-3	791	hypothetical protein VITISV_007978 [Vitis vinifera]
gb\|ACY72569.1\|							8	63.9	3e-08	295-621	321-435	-3	1436	unknown [Oryza sativa Japonica Group]
gb\|AAB82754.1\|							10	63.5	5e-08	283-621	320-438	-3	1445	retrofit [Oryza longistaminata]
gb\|ACV42639.1\|							12	62.8	9e-08	295-621	324-438	-3	1448	gag/pol [Oryza sativa Japonica Group]
dbj\|BAB90546.1\|							13	62.8	9e-08	295-621	324-438	-3	1448	putative rice retrotransposon retrofit gag/pol polyprotein [Oryza sativa Japonica Group]
gb\|ABG00000.1\|							15	62.0	1e-07	295-645	1272-1394	-3	2074	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
gb\|AAT85031.1\|							5	61.6	1e-09	295-621	318-432	-3	1437	putative polyprotein [Oryza sativa Japonica Group] gb\|ABF96679.1\| retrotransposon protein, putative, Ty1-copia subclass
emb\|CCH50966.1\|							17	60.1	2e-07	262-702	566-713	-3	1670	T4.5 [Malus x robusta]
emb\|CAN74695.1\|							3	58.9	3e-10	301-621	352-467	-3	1424	hypothetical protein VITISV_024648 [Vitis vinifera]
emb\|CAN83409.1\|							24	58.9	1e-06	295-618	248-361	-3	403	hypothetical protein VITISV_034065 [Vitis vinifera]
emb\|CDH30699.1\|							9	58.5	4e-08	295-630	363-480	-3	646	putative Ty1-copia-like retrotransposon [Cercis chinensis]
emb\|CAN77680.1\|							19	58.5	3e-07	295-633	292-410	-3	590	hypothetical protein VITISV_040762 [Vitis vinifera]
emb\|CAN78270.1\|							25	58.2	2e-06	295-657	168-294	-3	334	hypothetical protein VITISV_006712 [Vitis vinifera]
emb\|CBI31290.3\|							26	58.2	2e-06	244-621	445-576	-3	1201	unnamed protein product [Vitis vinifera]
emb\|CAN73349.1\|							27	57.8	3e-06	301-621	288-400	-3	424	hypothetical protein VITISV_009748 [Vitis vinifera]
emb\|CDY58610.1\|							29	57.4	4e-06	259-693	96-233	-3	856	BnaCnng33390D [Brassica napus]
emb\|CAN61322.1\|							30	57.4	5e-06	286-621	344-461	-3	1432	hypothetical protein VITISV_012106 [Vitis vinifera]
pir\|\|T02087							31	57.4	5e-06	295-618	323-436	-3	1439	gag/pol polyprotein - maize retrotransposon Hopscotch gb\|AAA57005.1\| copia-like retrotransposon Hopscotch polyprotein [Z
gb\|ABA95065.1\|							32	57.0	5e-06	295-621	305-419	-3	825	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
gb\|AAU43956.1\|							33	57.0	7e-06	295-621	318-432	-3	1447	unknown protein [Oryza sativa Japonica Group] gb\|AAU44069.1\| putative polyprotein [Oryza sativa Japonica Group]
emb\|CAN83798.1\|							23	56.6	1e-06	295-642	239-360	-3	787	hypothetical protein VITISV_039072 [Vitis vinifera]
emb\|CAN64418.1\|							38	56.2	1e-05	295-618	189-302	-3	1429	hypothetical protein VITISV_030041 [Vitis vinifera]
emb\|CAN66863.1\|							35	55.8	8e-06	301-621	155-267	-3	1112	hypothetical protein VITISV_013500 [Vitis vinifera]
ref\|XP_008356829.1\|							21	55.5	7e-07	301-621	863-975	-3	1390	PREDICTED: cation/H(+) antiporter 15-like [Malus domestica]
emb\|CAN63649.1\|							40	55.5	2e-05	295-639	293-413	-3	1131	hypothetical protein VITISV_037657 [Vitis vinifera]
emb\|CAN75700.1\|							18	55.1	3e-07	274-621	391-508	-3	1099	hypothetical protein VITISV_035987 [Vitis vinifera]
gb\|KDP42327.1\|							28	55.1	4e-06	295-624	46-161	-3	162	hypothetical protein JCGZ_02800 [Jatropha curcas]
gb\|AAT07563.1\|							42	55.1	3e-05	295-621	312-426	-3	1431	putative polyprotein [Oryza sativa Japonica Group] gb\|AAT07631.1\| putative polyprotein [Oryza sativa Japonica Group]
gb\|AAN04167.1\|							43	55.1	3e-05	295-645	208-332	-3	1042	Putative copia-like retrotransposon polyprotein [Oryza sativa Japonica Group] gb\|AAP53032.1\| retrotransposon protein, p
emb\|CAN81099.1\|							45	55.1	3e-05	298-687	352-483	-3	1455	hypothetical protein VITISV_017741 [Vitis vinifera]
gb\|AAD14478.1\|							46	55.1	3e-05	301-621	287-399	-3	1194	Strong similarity to gb\|AF039376 Evelknievel retrotransposon polyprotein from Arabidopsis arenosa [Arabidopsis thaliana
gb\|EEC80484.1\|							44	54.7	3e-05	295-621	309-423	-3	506	hypothetical protein OsI_22718 [Oryza sativa Indica Group]
emb\|CAN66496.1\|							50	54.7	4e-05	301-696	175-311	-3	1092	hypothetical protein VITISV_036886 [Vitis vinifera]
emb\|CAN59952.1\|							51	54.7	4e-05	289-621	341-457	-3	1365	hypothetical protein VITISV_006720 [Vitis vinifera]
gb\|AAR88589.1\|							56	53.5	8e-05	295-621	287-401	-3	1399	putative copia-like retrotransposon protein [Oryza sativa Japonica Group]
gb\|ABA95367.1\|							57	53.5	8e-05	301-621	289-402	-3	807	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
gb\|AAK55460.1\|AC069300_15							58	53.5	8e-05	295-621	321-435	-3	1031	putative gag-pol polyprotein [Oryza sativa Japonica Group] gb\|AAP54977.1\| retrotransposon protein, putative, Ty1-copia s
emb\|CAN69367.1\|							60	53.5	1e-04	286-621	239-356	-3	1083	hypothetical protein VITISV_035520 [Vitis vinifera]
gb\|ABA97279.2\|							54	53.1	7e-05	295-642	156-277	-3	297	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
gb\|ABA97008.1\|							62	53.1	1e-04	295-654	308-435	-3	1202	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
gb\|AAK43485.1\|AC084807_10							63	53.1	1e-04	301-618	337-448	-3	1459	polyprotein, putative [Arabidopsis thaliana] dbj\|BAH30336.1\| hypothetical protein [Arabidopsis thaliana]
emb\|CAN79733.1\|							59	52.4	9e-05	301-633	73-189	-3	807	hypothetical protein VITISV_016615 [Vitis vinifera]
emb\|CAN82452.1\|							69	52.4	2e-04	286-621	315-432	-3	1139	hypothetical protein VITISV_003326 [Vitis vinifera]
emb\|CAN83506.1\|							34	52.0	7e-06	289-645	224-348	-3	1172	hypothetical protein VITISV_027576 [Vitis vinifera]
dbj\|BAB10876.1\|							72	52.0	3e-04	301-618	314-425	-3	1429	polyprotein [Arabidopsis thaliana]
gb\|ABF95616.1\|							74	52.0	3e-04	295-621	309-423	-3	1241	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
emb\|CAH67640.1\|							75	52.0	3e-04	301-621	450-562	-3	1825	H0102C09.1 [Oryza sativa Indica Group]
emb\|CDP06210.1\|							73	51.6	3e-04	196-618	221-369	-3	406	unnamed protein product [Coffea canephora]
emb\|CAN60100.1\|							78	51.2	3e-04	298-621	243-358	-3	411	hypothetical protein VITISV_021668 [Vitis vinifera]
emb\|CAN63683.1\|							82	51.2	5e-04	301-621	345-457	-3	1272	hypothetical protein VITISV_030301 [Vitis vinifera]
gb\|ACP30598.1\|							83	51.2	5e-04	295-633	326-444	-3	2301	disease resistance protein [Brassica rapa subsp. pekinensis]
emb\|CAA19715.1\|							86	50.8	7e-04	295-627	174-290	-3	1318	putative protein [Arabidopsis thaliana] emb\|CAB79576.1\| putative protein [Arabidopsis thaliana]
ref\|XP_008374275.1\|							88	50.8	7e-04	295-618	37-150	-3	740	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Malus domestica]
ref\|XP_008356072.1\|							90	50.8	7e-04	301-621	354-467	-3	779	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103419758 [Malus domestica]
emb\|CAN81355.1\|							92	50.4	9e-04	289-621	341-457	-3	1402	hypothetical protein VITISV_039158 [Vitis vinifera]
gb\|AAF99727.1\|AC004557_6							93	50.4	0.001				1534	F17L21.7 [Arabidopsis thaliana]
gb\|AAC67200.1\|							11	49.3	6e-08	295-627	329-445	-3	1402	putative retroelement pol polyprotein [Arabidopsis thaliana]
gb\|ABA98049.1\|							36	48.5	8e-06	295-621	319-434	-3	1460	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
emb\|CAN61376.1\|							61	48.5	1e-04	292-630	9-127	-3	675	hypothetical protein VITISV_011846 [Vitis vinifera]
emb\|CAN74166.1\|							53	47.0	5e-05	304-621	13-124	-3	631	hypothetical protein VITISV_007721 [Vitis vinifera]
emb\|CAN76151.1\|							87	43.1	7e-04	295-630	154-227	-3	979	hypothetical protein VITISV_012673 [Vitis vinifera]
ref\|XP_008360435.1\|							65	9	52.4				513	PREDICTED: uncharacterized protein LOC103424139 [Malus domestica]
ref\|XP_009597451.1\|							16	8	60.8				313	PREDICTED: uncharacterized protein LOC104093418 [Nicotiana tomentosiformis] ref\|XP_009605373.1\| PREDICTED: uncharacteriz
ref\|XP_004971816.1\|							20	8	60.8				1281	PREDICTED: uncharacterized protein LOC101779238, partial [Setaria italica]
ref\|XP_010645247.1\|							66	8	52.4				414	PREDICTED: uncharacterized protein LOC104877828 [Vitis vinifera]
ref\|XP_010263949.1\|							89	8	50.1				320	PREDICTED: uncharacterized protein LOC104602078 [Nelumbo nucifera]
ref\|XP_009597228.1\|							22	7	58.9				313	PREDICTED: uncharacterized protein LOC104093207 [Nicotiana tomentosiformis] ref\|XP_009605337.1\| PREDICTED: uncharacteriz
ref\|XP_008366645.1\|							39	7	55.5				603	PREDICTED: uncharacterized protein LOC103430287 [Malus domestica]
ref\|XP_010243147.1\|							47	7	54.3				297	PREDICTED: uncharacterized protein LOC104587297 [Nelumbo nucifera]
ref\|XP_008362575.1\|							55	7	53.9				759	PREDICTED: uncharacterized protein LOC103426257 [Malus domestica]
ref\|XP_009785398.1\|							77	7	50.8				238	PREDICTED: uncharacterized protein LOC104233667 [Nicotiana sylvestris]
ref\|XP_010655804.1\|							84	6	51.2				1045	PREDICTED: uncharacterized protein LOC104880556 [Vitis vinifera]
ref\|XP_010264130.1\|							41	5	54.7				347	PREDICTED: uncharacterized protein LOC104602215 [Nelumbo nucifera]
ref\|XP_010242057.1\|							48	5	54.3				344	PREDICTED: uncharacterized protein LOC104586495 [Nelumbo nucifera]
ref\|XP_010252418.1\|							7	3	63.5				440	PREDICTED: uncharacterized protein LOC104593993 [Nelumbo nucifera]
ref\|XP_009373187.1\|							71	3	52.0				878	PREDICTED: uncharacterized protein LOC103962233 [Pyrus x bretschneideri]
ref\|XP_008390959.1\|							80	3	51.6				656	PREDICTED: uncharacterized protein LOC103453183 [Malus domestica]
ref\|XP_010431048.1\|							37	2	55.5				266	PREDICTED: uncharacterized protein LOC104715332 [Camelina sativa]
ref\|XP_010248464.1\|							49	2	53.9				266	PREDICTED: uncharacterized protein LOC104591372 [Nelumbo nucifera]
ref\|XP_009786936.1\|							52	2	53.9				291	PREDICTED: uncharacterized protein LOC104234972 [Nicotiana sylvestris]
ref\|XP_009620599.1\|							70	2	49.7				142	PREDICTED: uncharacterized protein LOC104112402 [Nicotiana tomentosiformis]
ref\|XP_008355539.1\|							81	2	51.2				637	PREDICTED: uncharacterized protein LOC103419202 [Malus domestica]
ref\|XP_008390627.1\|							64	1	44.3				1159	PREDICTED: uncharacterized protein LOC103452871 [Malus domestica]
ref\|XP_004967136.1\|							68	1	52.4				866	PREDICTED: uncharacterized protein LOC101762311 [Setaria italica]
ref\|XP_010265572.1\|							79	1	50.8				257	PREDICTED: uncharacterized protein LOC104603271 [Nelumbo nucifera]
ref\|XP_008374297.1\|							91	1	50.4				1210	PREDICTED: uncharacterized protein LOC103437591 [Malus domestica]
ref\|XP_009145096.1\|							14	0	61.6				2690	PREDICTED: uncharacterized protein LOC103868780 [Brassica rapa]
ref\|XP_009344802.1\|							67	0	52.4				613	PREDICTED: uncharacterized protein LOC103936680 [Pyrus x bretschneideri]
ref\|XP_008387175.1\|							76	0	51.6				647	PREDICTED: uncharacterized protein LOC103449620 [Malus domestica]
ref\|XP_011016404.1\|							85	0	50.8				987	PREDICTED: uncharacterized protein LOC105119910 [Populus euphratica]