Clone JMSF006N16 [sequences]

contigF:006391 contigR:012792
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
emb|CDP01757.1|199.44e-2226-247394-465-3637unnamed protein product [Coffea canephora]
ref|XP_009618724.1|297.82e-2126-247464-534-3690PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Nicotiana tomentosiformis]
ref|XP_009773556.1|396.37e-2126-247575-645-3801PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Nicotiana sylvestris]
ref|XP_011087416.1|495.97e-2126-247392-463-3626PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Sesamum indicum]
ref|XP_009777634.1|595.98e-2126-247395-465-3619PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Nicotiana sylvestris]
ref|XP_009777635.1|695.51e-2026-247345-415-3569PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X2 [Nicotiana sylvestris] ref|XP_0097
ref|XP_009619796.1|795.11e-2026-247395-465-3620PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Nicotiana tomentosiformis] r
ref|XP_009619798.1|894.72e-2026-247345-415-3570PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Nicotiana tomentosiformis]
ref|XP_006364840.1|992.88e-2026-247393-463-3618PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Solanum tuberosum]
ref|XP_004232589.1|1092.89e-2026-247393-463-3617PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Solanum lycopersicum]
ref|XP_003547884.1|1392.02e-1926-247395-466-3627PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Glycine max] ref|XP_00659925
gb|KHN38852.1|1691.72e-1926-247395-466-3628RNA polymerase I-specific transcription initiation factor RRN3 [Glycine soja]
ref|XP_003534228.1|1791.72e-1926-247395-466-3628PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Glycine max]
ref|XP_006483466.1|1991.33e-1926-247399-470-3628PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Citrus sinensis]
ref|XP_006483467.1|1890.93e-1926-247306-377-3535PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Citrus sinensis]
ref|XP_006483560.1|2090.94e-1926-247306-377-3535PREDICTED: RNA polymerase I-specific transcription initiation factor rrn3-like isoform X2 [Citrus sinensis]
ref|XP_006483559.1|2190.94e-1926-247399-470-3628PREDICTED: RNA polymerase I-specific transcription initiation factor rrn3-like isoform X1 [Citrus sinensis]
ref|XP_006483734.1|1190.51e-1926-24786-157-3315PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Citrus sinensis]
ref|XP_006483561.1|2290.55e-1926-247399-470-3534PREDICTED: RNA polymerase I-specific transcription initiation factor rrn3-like isoform X3 [Citrus sinensis]
gb|KDP41755.1|2390.18e-1926-247398-469-3628hypothetical protein JCGZ_26773 [Jatropha curcas]
gb|KDO67466.1|1289.72e-1926-24763-134-3292hypothetical protein CISIN_1g0074032mg, partial [Citrus sinensis]
gb|KDO67298.1|1589.42e-1926-24763-134-3292hypothetical protein CISIN_1g0416052mg, partial [Citrus sinensis]
ref|XP_004155826.1|2489.41e-1826-247395-466-3625PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Cucumis sativus]
ref|XP_004133864.1|2589.41e-1826-247395-466-3626PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Cucumis sativus] gb|KGN56512.1| hypothe
ref|XP_002524432.1|2689.02e-1826-247410-481-3640transcription initiation factor ia, putative [Ricinus communis] gb|EEF37967.1| transcription initiation factor ia, putat
gb|KCW53303.1|2789.02e-1826-247372-443-3609hypothetical protein EUGRSUZ_J02557 [Eucalyptus grandis]
ref|XP_008438040.1|2889.02e-1826-247395-466-3625PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo] ref|XP_008438041.1| PREDICTED:
gb|KCW53301.1|2989.03e-1826-247397-468-3634hypothetical protein EUGRSUZ_J02557 [Eucalyptus grandis]
ref|XP_010033606.1|3088.63e-1826-247396-467-3633PREDICTED: RNA polymerase I-specific transcription initiation factor rrn3 [Eucalyptus grandis] gb|KCW53302.1| hypotheti
gb|KDO67467.1|1488.22e-1926-24763-134-3202hypothetical protein CISIN_1g0074032mg, partial [Citrus sinensis]
gb|EYU37427.1|3188.23e-1826-247309-380-3541hypothetical protein MIMGU_mgv1a004171mg [Erythranthe guttata]
ref|XP_004508346.1|3286.71e-1726-247397-468-3620PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Cicer arietinum] ref|XP_0045
gb|KHF98889.1|3385.92e-1726-247392-462-3523RNA polymerase I-specific transcription initiation factor RRN3 [Gossypium arboreum]
gb|KJB18645.1|3485.92e-1726-247392-462-3629hypothetical protein B456_003G064600 [Gossypium raimondii] gb|KJB18646.1| hypothetical protein B456_003G064600 [Gossypiu
ref|XP_007134114.1|3585.53e-1726-247395-466-3620hypothetical protein PHAVU_010G020100g [Phaseolus vulgaris] gb|ESW06108.1| hypothetical protein PHAVU_010G020100g [Phase
ref|XP_010272854.1|3685.15e-1726-247396-470-3631PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Nelumbo nucifera] ref|XP_010272855.1| P
ref|XP_010649342.1|3984.31e-1626-247396-467-3627PREDICTED: RNA polymerase I-specific transcription initiation factor rrn3 [Vitis vinifera]
emb|CBI37506.3|3884.01e-1626-247396-467-3607unnamed protein product [Vitis vinifera]
ref|XP_008392869.1|4083.61e-1626-247328-399-3555PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Malus domestica]
ref|XP_010088711.1|4283.61e-1626-247395-465-3616hypothetical protein L484_016497 [Morus notabilis] gb|EXB36892.1| hypothetical protein L484_016497 [Morus notabilis]
ref|XP_009369775.1|4383.62e-1626-247400-471-3627PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Pyrus x bretschneideri]
ref|XP_008354575.1|4483.62e-1626-247400-471-3627PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Malus domestica]
ref|XP_011022128.1|4682.83e-1626-247409-480-3637PREDICTED: RNA polymerase I-specific transcription initiation factor rrn3 [Populus euphratica]
gb|ACJ85821.1|3782.46e-1726-24761-132-3292unknown [Medicago truncatula]
ref|XP_002307198.2|4782.45e-1626-247409-480-3637RNA polymerase 1 specific transcription initiation factor RRN3 family protein [Populus trichocarpa] gb|EEE94194.2| RNA
ref|XP_006849976.1|4881.38e-1626-247423-496-3563hypothetical protein AMTR_s00022p00154500 [Amborella trichopoda] gb|ERN11557.1| hypothetical protein AMTR_s00022p0015450
ref|XP_007204094.1|4981.31e-1526-247392-463-3622hypothetical protein PRUPE_ppa002914mg [Prunus persica] gb|EMJ05293.1| hypothetical protein PRUPE_ppa002914mg [Prunus pe
ref|XP_010272853.1|5081.31e-1526-247396-470-3631PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Nelumbo nucifera]
ref|XP_008681385.1|5179.74e-1526-247390-464-3620PREDICTED: uncharacterized protein LOC100272544 isoform X1 [Zea mays] gb|AFW69236.1| hypothetical protein ZEAMMB73_4573
gb|AFW69235.1|5279.34e-1526-244363-436-3592hypothetical protein ZEAMMB73_457339 [Zea mays]
ref|XP_002437492.1|5379.35e-1526-244364-437-3593hypothetical protein SORBIDRAFT_10g028030 [Sorghum bicolor] gb|EER88859.1| hypothetical protein SORBIDRAFT_10g028030 [So
ref|XP_008242108.1|5478.21e-1426-247392-463-3622PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Prunus mume]
ref|XP_010913887.1|5576.63e-1426-247299-373-3523PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X3 [Elaeis guineensis]
ref|XP_010913886.1|5676.36e-1426-247378-452-3602PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Elaeis guineensis]
ref|XP_010913884.1|5776.37e-1426-247402-476-3626PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Elaeis guineensis] ref|XP_01
ref|XP_008805454.1|5875.99e-1426-247402-476-3626PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Phoenix dactylifera]
ref|XP_009391870.1|6075.12e-1326-247400-474-3632PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Musa acuminata subsp. malaccensis] ref|
ref|XP_006415449.1|6173.94e-1326-247396-465-3614hypothetical protein EUTSA_v10007103mg [Eutrema salsugineum] gb|ESQ33802.1| hypothetical protein EUTSA_v10007103mg [Eutr
emb|CDY36511.1|5973.21e-1332-24463-129-3270BnaC03g48700D [Brassica napus]
ref|XP_009411620.1|6273.27e-1326-247400-475-3629PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Musa acuminata subsp. malaccensis]
ref|XP_004966190.1|6373.28e-1326-247388-465-3618PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Setaria italica]
ref|XP_008242159.1|6472.81e-1226-247294-365-3701PREDICTED: LOW QUALITY PROTEIN: RNA polymerase I-specific transcription initiation factor rrn3-like, partial [Prunus mu
ref|XP_004966189.1|6572.02e-1226-244415-491-3644PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Setaria italica]
emb|CDY43658.1|6671.23e-1226-247390-459-3605BnaA04g20330D [Brassica napus]
ref|XP_006656405.1|6770.95e-1226-247392-466-3622PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Oryza brachyantha]
gb|KFK44868.1|6870.95e-1226-247393-462-3608hypothetical protein AALP_AA1G312900 [Arabis alpina]
ref|XP_004287706.1|6970.56e-1232-247397-466-3628PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Fragaria vesca subsp. vesca]
ref|XP_006656406.1|7070.56e-1226-247367-441-3597PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Oryza brachyantha]
ref|NP_001058413.2|7270.18e-1226-247392-466-3622Os06g0688100 [Oryza sativa Japonica Group] dbj|BAD45608.1| putative RNA polymerase I transcription factor RRN3 [Oryza sa
dbj|BAF01881.1|7169.78e-1226-247197-266-3410hypothetical protein [Arabidopsis thaliana]
ref|XP_010674318.1|7469.71e-1126-244407-477-3634PREDICTED: RNA polymerase I-specific transcription initiation factor rrn3 [Beta vulgaris subsp. vulgaris]
ref|XP_006410626.1|7569.71e-1126-247400-469-3616hypothetical protein EUTSA_v10016395mg [Eutrema salsugineum] gb|ESQ52079.1| hypothetical protein EUTSA_v10016395mg [Eutr
gb|EEC81212.1|7669.71e-1126-247392-466-3622hypothetical protein OsI_24246 [Oryza sativa Indica Group]
ref|NP_850236.1|7769.31e-1126-247400-469-3613RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana] gb|AAM20140.1| unknown pr
emb|CDX79576.1|7869.31e-1126-247393-462-3608BnaC03g19120D [Brassica napus]
gb|EMS63005.1|7969.32e-1126-244333-405-3571hypothetical protein TRIUR3_02342 [Triticum urartu]
ref|XP_009133000.1|8069.32e-1126-247389-458-3605PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Brassica rapa]
emb|CDX84629.1|8169.32e-1126-247397-466-3613BnaA03g16010D [Brassica napus]
ref|XP_010540653.1|8369.32e-1126-247395-465-3614PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Tarenaya hassleriana]
ref|XP_010552505.1|8268.92e-1126-244378-446-3550PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Tarenaya hassleriana]
gb|AAC16259.1|8468.92e-1126-244390-458-3602unknown protein [Arabidopsis thaliana]
ref|XP_006307098.1|8568.92e-1126-247374-443-3581hypothetical protein CARUB_v10008684mg [Capsella rubella] gb|EOA39996.1| hypothetical protein CARUB_v10008684mg [Capsell
ref|XP_010516632.1|8668.63e-1126-247400-469-3615PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Camelina sativa] ref|XP_010516633.1| PR
ref|XP_009143744.1|8768.63e-1132-247388-455-3597PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Brassica rapa]
ref|XP_010519059.1|8868.23e-1126-244389-457-3561PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Tarenaya hassleriana]
ref|XP_010509710.1|8968.24e-1126-247399-468-3613PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Camelina sativa] ref|XP_010509711.1| PR
ref|XP_010460864.1|9068.24e-1126-247389-458-3611PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Camelina sativa]
ref|XP_002893635.1|9168.24e-1126-247393-462-3610predicted protein [Arabidopsis lyrata subsp. lyrata] gb|EFH69894.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
ref|XP_010504951.1|9268.24e-1126-247401-470-3616PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Camelina sativa] ref|XP_010504952.1| PR
dbj|BAD45609.1|7367.81e-1126-24761-135-3291RNA polymerase I specific transcription initiation factor RRN3-like [Oryza sativa Japonica Group] dbj|BAD46065.1| RNA p
ref|NP_174347.1|9467.86e-1126-247387-456-3604RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana] gb|AEE31247.1| RNA polyme
ref|XP_008782843.1|9367.45e-1126-247234-308-3466PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Phoenix dactylifera]
ref|XP_003563455.1|9567.47e-1126-247392-465-3622PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Brachypodium distachyon]
emb|CDY31637.1|9667.47e-1132-247374-441-3583BnaA05g09100D [Brassica napus]
gb|AAD25746.1|AC007060_49767.48e-1126-247405-474-3622EST gb|Z37678 comes from this gene [Arabidopsis thaliana]
ref|XP_010460863.1|9867.08e-1126-247389-458-3538PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Camelina sativa]
ref|XP_010478481.1|9967.01e-1026-247387-456-3597PREDICTED: RNA polymerase I-specific transcription initiation factor rrn3-like [Camelina sativa] ref|XP_010478483.1| PR
ref|XP_002881355.1|10167.01e-1026-247399-468-3614RNA polymerase I specific transcription initiation factor RRN3 family protein [Arabidopsis lyrata subsp. lyrata] gb|EFH
ref|XP_010227381.1|10066.61e-1026-247308-381-3538PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Brachypodium distachyon]
ref|XP_009141397.1|10266.61e-1026-247382-451-3597PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Brassica rapa]
ref|XP_010928803.1|10366.22e-1026-247378-452-3610PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X2 [Elaeis guineensis]
ref|XP_010928802.1|10466.22e-1026-247402-476-3634PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Elaeis guineensis]
ref|XP_010499599.1|10565.14e-1026-247390-459-3597PREDICTED: RNA polymerase I-specific transcription initiation factor rrn3-like isoform X2 [Camelina sativa]
ref|XP_010499598.1|10665.15e-1026-247415-484-3622PREDICTED: RNA polymerase I-specific transcription initiation factor rrn3-like isoform X1 [Camelina sativa]
ref|XP_008782841.1|10765.15e-1026-247338-412-3570PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 [Phoenix dactylifera]
ref|XP_006296428.1|10864.39e-1026-247394-463-3608hypothetical protein CARUB_v10025608mg [Capsella rubella] gb|EOA29326.1| hypothetical protein CARUB_v10025608mg [Capsell
emb|CDX84284.1|10963.52e-0932-247395-462-3600BnaC04g10460D [Brassica napus]
ref|XP_007204151.1|11062.83e-0926-247324-408-3569hypothetical protein PRUPE_ppa019726mg [Prunus persica] gb|EMJ05350.1| hypothetical protein PRUPE_ppa019726mg [Prunus pe
ref|NP_181457.2|11162.83e-0926-247372-441-3573RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana] gb|ABE65893.1| RNA polyme
gb|AAC28984.1|11262.44e-0926-244345-413-3545unknown protein [Arabidopsis thaliana]
ref|XP_006293892.1|11362.06e-0926-247387-456-3585hypothetical protein CARUB_v10022885mg [Capsella rubella] gb|EOA26790.1| hypothetical protein CARUB_v10022885mg [Capsell
ref|XP_002879723.1|11460.52e-0826-247350-419-3494hypothetical protein ARALYDRAFT_902994 [Arabidopsis lyrata subsp. lyrata] gb|EFH55982.1| hypothetical protein ARALYDRAF
ref|XP_002881638.1|11559.34e-0880-247389-442-3584hypothetical protein ARALYDRAFT_321615 [Arabidopsis lyrata subsp. lyrata] gb|EFH57897.1| hypothetical protein ARALYDRAF
ref|XP_001771048.1|11659.34e-0826-244342-419-3624predicted protein [Physcomitrella patens] gb|EDQ64203.1| predicted protein [Physcomitrella patens]
ref|XP_001775034.1|11759.36e-0826-244376-453-3655predicted protein [Physcomitrella patens] gb|EDQ60141.1| predicted protein [Physcomitrella patens]
ref|XP_002967968.1|11858.97e-0826-244418-491-3637hypothetical protein SELMODRAFT_440149 [Selaginella moellendorffii] gb|EFJ31315.1| hypothetical protein SELMODRAFT_44014
emb|CDY71933.1|11957.01e-0732-247143-209-3348BnaCnng75170D, partial [Brassica napus]
ref|XP_002963952.1|12056.64e-0726-244418-491-3635hypothetical protein SELMODRAFT_405493 [Selaginella moellendorffii] gb|EFJ34285.1| hypothetical protein SELMODRAFT_40549
ref|XP_006467185.1|12152.01e-0526-151389-430-3588PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3-like [Citrus sinensis]
emb|CDS11486.1|12447.84e-04122-241437-477-3667hypothetical protein LRAMOSA03749 [Absidia idahoensis var. thermophila]
ref|XP_004998396.1|12546.60.001865hypothetical protein PTSG_00924 [Salpingoeca rosetta] gb|EGD76221.1| hypothetical protein PTSG_00924 [Salpingoeca rosett
gb|KDO71567.1|12246.21e-0426-1481-41-3109hypothetical protein CISIN_1g0157611mg, partial [Citrus sinensis]
gb|KDO71565.1|12346.23e-0426-1481-41-3184hypothetical protein CISIN_1g0157611mg, partial [Citrus sinensis] gb|KDO71566.1| hypothetical protein CISIN_1g0157611mg,
ref|XP_007046443.1|41184.0628Major facilitator superfamily protein isoform 1 [Theobroma cacao] ref|XP_007046444.1| Major facilitator superfamily prot
gb|KEH32234.1|45e83.6635transcription initiation factor ia protein, putative [Medicago truncatula]