Clone JMFS039F04 [sequences]

contigF:003493 contigR:
name5'-sequence3'-sequencelengthdescription
rankscoreEvalueregion1region2framerankscoreEvalueregion1region2frame
ref|NP_001266205.1|21242e-28353-6041-82+21197RNA-dependent RNA polymerase 6 [Solanum lycopersicum] gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicu
ref|XP_009609663.1|11224e-30353-6041-82+2259PREDICTED: RNA-dependent RNA polymerase 6, partial [Nicotiana tomentosiformis]
gb|ACO72600.1|31225e-28353-6041-82+21197RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
gb|ACA13601.1|41227e-28353-6041-82+21197RNA-dependent RNA polymerase [Nicotiana attenuata]
ref|XP_009758053.1|51211e-27353-6041-82+21197PREDICTED: RNA-dependent RNA polymerase 6 [Nicotiana sylvestris]
emb|CAR47810.1|61211e-27353-6041-82+21197RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
gb|AAU21242.1|71211e-27353-6041-82+21197putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
gb|ADI52625.1|81202e-27353-6041-82+21197RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
ref|XP_010319120.1|91203e-27353-6041-82+21197PREDICTED: RNA-dependent RNA polymerase 6 isoform X1 [Solanum lycopersicum] ref|XP_010319121.1| PREDICTED: RNA-dependen
dbj|BAF96019.1|101194e-27353-6041-82+21197RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
ref|XP_006346784.1|111197e-27353-6041-82+21198PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum tuberosum] ref|XP_006346785.1| PREDICTED: RNA-depend
ref|XP_010325614.1|121143e-25353-6041-82+21200PREDICTED: LOW QUALITY PROTEIN: RNA-dependent RNA polymerase 6-like [Solanum lycopersicum]
gb|AHL27586.1|131112e-24377-6046-81+21195RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
gb|EYU20269.1|141106e-24353-6101-84+21196hypothetical protein MIMGU_mgv1a000386mg [Erythranthe guttata]
ref|XP_011081567.1|151075e-23353-6045-86+21205PREDICTED: RNA-dependent RNA polymerase 6 [Sesamum indicum]
ref|XP_006404133.1|161032e-21389-61327-102+2927hypothetical protein EUTSA_v10010107mg [Eutrema salsugineum] gb|ESQ45586.1| hypothetical protein EUTSA_v10010107mg [Eutr
dbj|BAJ34538.1|171032e-21389-61311-86+2998unnamed protein product [Thellungiella halophila]
emb|CDY30979.1|181007e-21389-61311-86+2595BnaC04g24450D [Brassica napus]
ref|XP_011026450.1|191001e-20389-61311-86+21200PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
ref|XP_007011871.1|201001e-20353-6161-87+21197RNA-dependent RNA polymerase 6 [Theobroma cacao] gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
gb|KDP38635.1|2199.44e-20353-6101-85+21198hypothetical protein JCGZ_03988 [Jatropha curcas]
ref|XP_010531140.1|2299.44e-20350-61313-99+21208PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Tarenaya hassleriana]
ref|XP_010531141.1|2399.05e-20353-6131-86+21195PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Tarenaya hassleriana]
ref|XP_010531131.1|2498.21e-19350-6135-91+21200PREDICTED: RNA-dependent RNA polymerase 6-like [Tarenaya hassleriana]
ref|XP_010254390.1|2598.21e-19353-6131-86+21193PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera] ref|XP_010254391.1| PREDICTED: RNA-dependent RNA polym
ref|XP_010503608.1|2697.81e-19389-61311-86+21197PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Camelina sativa]
ref|XP_010503610.1|2797.41e-19389-61311-86+2905PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Camelina sativa]
ref|XP_002877681.1|2897.42e-19353-6131-86+21197RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata] gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabido
ref|XP_006290518.1|3196.73e-19389-61011-85+21197hypothetical protein CARUB_v10016597mg [Capsella rubella] gb|EOA23416.1| hypothetical protein CARUB_v10016597mg [Capsell
ref|XP_010515303.1|3295.58e-19389-61311-86+21197PREDICTED: RNA-dependent RNA polymerase 6 [Camelina sativa]
ref|XP_002324295.1|3395.58e-19389-61311-86+21200SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] gb|EEF02860.1| SILENCING DEFECTIVE 1 family protein [Populus
ref|XP_006842072.1|3495.59e-19371-6138-88+21207hypothetical protein AMTR_s00078p00055040 [Amborella trichopoda] gb|ERN03747.1| hypothetical protein AMTR_s00078p0005504
ref|XP_008394093.1|3594.71e-18377-6137-86+21197PREDICTED: RNA-dependent RNA polymerase 6 [Malus domestica] ref|XP_008394094.1| PREDICTED: RNA-dependent RNA polymerase
gb|EPS62146.1|3694.72e-18371-6131-79+21195hypothetical protein M569_12646, partial [Genlisea aurea]
ref|XP_003522618.1|3794.02e-18362-6132-86+21204PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine max] ref|XP_006578148.1| PREDICTED: RNA-dependent RN
ref|XP_003526410.1|3894.03e-18362-6132-86+21204PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine max] ref|XP_006581359.1| PREDICTED: RNA-dependent RN
ref|XP_009152135.1|3994.03e-18389-61311-86+21198PREDICTED: RNA-dependent RNA polymerase 6 [Brassica rapa] ref|XP_009152142.1| PREDICTED: RNA-dependent RNA polymerase 6
gb|KDP33599.1|4094.03e-18353-6041-83+21199hypothetical protein JCGZ_07170 [Jatropha curcas]
emb|CDY55600.1|2993.63e-19389-6135-80+2327BnaC01g42580D [Brassica napus]
emb|CDY68450.1|3093.63e-19353-6131-86+2333BnaAnng27310D [Brassica napus]
gb|KFK40016.1|4193.63e-18353-6131-86+21198rna-dependent rna polymerase 6 [Arabis alpina]
gb|AAF74208.1|AF268093_14293.63e-18389-61011-85+21196RNA-dependent RNA polymerase [Arabidopsis thaliana]
ref|NP_190519.1|4393.64e-18389-61011-85+21196RNA-dependent RNA polymerase 6 [Arabidopsis thaliana] sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase
gb|KHN07082.1|4492.87e-18362-6132-86+21204RNA-dependent RNA polymerase 6 [Glycine soja]
ref|XP_008778879.1|4592.87e-18353-6041-87+21198PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase SHL2 [Phoenix dactylifera]
ref|XP_011039698.1|4692.48e-18389-61311-86+21195PREDICTED: RNA-dependent RNA polymerase 6-like [Populus euphratica]
ref|XP_010250107.1|4792.01e-17386-61310-86+21200PREDICTED: RNA-dependent RNA polymerase 6-like [Nelumbo nucifera]
ref|XP_002308662.1|4892.01e-17389-61311-86+21198SILENCING DEFECTIVE 1 family protein [Populus trichocarpa] gb|EEE92185.1| SILENCING DEFECTIVE 1 family protein [Populus
ref|XP_002282647.1|5190.93e-17353-6131-86+21197PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera] ref|XP_010648660.1| PREDICTED: RNA-dependent RNA polymerase 6
ref|XP_008445204.1|5290.54e-17368-6133-85+21197PREDICTED: RNA-dependent RNA polymerase 6 [Cucumis melo]
ref|XP_002515520.1|5390.15e-17389-61311-86+21203RNA-dependent RNA polymerase, putative [Ricinus communis] gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus
ref|XP_004160762.1|5490.16e-17368-6133-85+21197PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
ref|NP_001267634.1|5590.16e-17368-6133-85+21197RNA-dependent RNA polymerase 6-like [Cucumis sativus] gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus] gb
gb|ADG57590.1|5690.16e-17389-61311-86+21196RNA-dependent RNA polymerase 6 [Gossypium hirsutum] gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gb|KHG28504.1|5790.16e-17389-61311-86+21214RNA-dependent RNA polymerase 6 -like protein [Gossypium arboreum]
ref|XP_008219491.1|5889.77e-17389-61311-85+21196PREDICTED: RNA-dependent RNA polymerase 6 [Prunus mume]
gb|AHO49120.1|5989.78e-17353-6131-86+21195RNA-dependent RNA polymerase 6 [Carica papaya]
ref|XP_007137030.1|6189.41e-16362-6132-86+21204hypothetical protein PHAVU_009G093700g [Phaseolus vulgaris] gb|ESW09024.1| hypothetical protein PHAVU_009G093700g [Phase
ref|XP_006483356.1|6289.41e-16386-61610-87+21197PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus sinensis] ref|XP_006483357.1| PREDICTED: RNA-dependen
ref|XP_006483358.1|6089.01e-16386-61310-86+21025PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus sinensis]
ref|XP_009355733.1|6389.01e-16377-6107-85+21197PREDICTED: RNA-dependent RNA polymerase 6 [Pyrus x bretschneideri] ref|XP_009355734.1| PREDICTED: RNA-dependent RNA poly
gb|KJB55000.1|6489.01e-16389-61311-86+21196hypothetical protein B456_009G057700 [Gossypium raimondii]
ref|XP_007225440.1|6688.62e-16389-61311-85+21196hypothetical protein PRUPE_ppa000422mg [Prunus persica] gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe
gb|AGU69384.1|6788.62e-16362-6132-86+21201RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
gb|KDO61726.1|6888.22e-16386-61610-87+21197hypothetical protein CISIN_1g041430mg [Citrus sinensis]
ref|XP_010921974.1|6987.83e-16353-6131-90+21198PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Elaeis guineensis]
ref|XP_010048973.1|7087.05e-16389-61311-86+21195PREDICTED: RNA-dependent RNA polymerase 6-like [Eucalyptus grandis] gb|KCW81403.1| hypothetical protein EUGRSUZ_C02780 [
gb|AES73660.2|7187.06e-16353-6131-88+21203RNA-dependent RNA polymerase family protein [Medicago truncatula]
gb|KDO48832.1|7286.31e-15371-6043-81+21117hypothetical protein CISIN_1g048783mg, partial [Citrus sinensis]
ref|XP_004291459.2|7386.31e-15389-61314-89+21200PREDICTED: RNA-dependent RNA polymerase 6 isoform X1 [Fragaria vesca subsp. vesca]
ref|XP_011459183.1|7486.31e-15389-61311-86+21197PREDICTED: RNA-dependent RNA polymerase 6 isoform X2 [Fragaria vesca subsp. vesca]
ref|XP_006842073.1|7585.91e-15371-6138-88+21207hypothetical protein AMTR_s00078p00056260 [Amborella trichopoda] gb|ERN03748.1| hypothetical protein AMTR_s00078p0005626
ref|NP_001154496.1|4985.52e-17383-6019-83+2143uncharacterized protein [Arabidopsis thaliana] gb|AAX55107.1| hypothetical protein At2g05370 [Arabidopsis thaliana] gb|A
gb|AAO11660.1|5085.52e-17383-6019-83+2143hypothetical protein [Arabidopsis thaliana]
ref|NP_178605.1|6584.71e-16383-6013-77+2211uncharacterized protein [Arabidopsis thaliana] gb|AAD32900.1| hypothetical protein [Arabidopsis thaliana] gb|AEC05921.1|
ref|XP_010696115.1|7684.74e-15353-6131-87+21208PREDICTED: RNA-dependent RNA polymerase 6 [Beta vulgaris subsp. vulgaris]
ref|XP_009389500.1|7783.68e-15374-6139-90+21199PREDICTED: LOW QUALITY PROTEIN: probable RNA-dependent RNA polymerase SHL2 [Musa acuminata subsp. malaccensis]
ref|XP_004501325.1|7880.57e-14362-6102-85+21201PREDICTED: RNA-dependent RNA polymerase 6-like isoform X2 [Cicer arietinum] ref|XP_004501326.1| PREDICTED: RNA-dependen
ref|XP_004501324.1|7980.58e-14362-61048-131+21247PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Cicer arietinum]
ref|XP_010048974.1|8079.72e-13386-61310-86+21196PREDICTED: RNA-dependent RNA polymerase 6-like [Eucalyptus grandis] gb|KCW81405.1| hypothetical protein EUGRSUZ_C02782 [
ref|XP_010101266.1|8179.03e-13389-61311-86+21194RNA-dependent RNA polymerase 6 [Morus notabilis] gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
ref|XP_004968861.1|8277.01e-12386-60419-96+21211PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria italica]
gb|KCW81402.1|8375.14e-12389-61311-86+2967hypothetical protein EUGRSUZ_C02779 [Eucalyptus grandis]
sp|Q8LHH9.1|SHL2_ORYSJ8474.38e-12386-61327-107+21218RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName: Full=Protein SHOOTLESS 2 [Oryza sativa Japonica Grou
ref|XP_002457941.1|8573.91e-11386-61319-96+21207hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor] gb|EES03061.1| hypothetical protein SORBIDRAFT_03g022880 [So
tpg|DAA54873.1|8673.22e-11386-61319-96+2937TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
ref|XP_003561343.1|8765.94e-09386-61316-93+21208PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Brachypodium distachyon]
ref|XP_003603409.1|8865.56e-09443-61316-73+21188Rna-dependent RNA polymerase [Medicago truncatula]
ref|XP_010232159.1|8962.45e-08386-61320-97+21200PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Brachypodium distachyon]
gb|EEE54718.1|9060.52e-07386-53227-75+21571hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
ref|XP_004974340.1|9157.82e-06383-61362-144+21432PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria italica]
ref|XP_008661039.1|9257.03e-06356-60446-136+21238PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Zea mays]
gb|AFW87660.1|9357.03e-06356-604709-799+21901hypothetical protein ZEAMMB73_096378 [Zea mays]
ref|XP_002437387.1|9456.63e-06392-61365-149+21251hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor] gb|EER88754.1| hypothetical protein SORBIDRAFT_10g025970 [So
gb|AFW87586.1|9556.63e-06392-604123-202+2577hypothetical protein ZEAMMB73_608283 [Zea mays]
ref|XP_002445216.1|9656.64e-06389-6139-116+21220hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor] gb|EES14711.1| hypothetical protein SORBIDRAFT_07g006150 [So
ref|XP_008659869.1|9756.24e-06356-60446-137+21241PREDICTED: probable RNA-dependent RNA polymerase SHL2 [Zea mays] gb|AFW87584.1| hypothetical protein ZEAMMB73_985632 [Ze
ref|XP_004974341.1|9856.26e-06398-55912-63+21257PREDICTED: probable RNA-dependent RNA polymerase SHL2-like [Setaria italica]
ref|XP_002437386.1|9954.32e-05389-60458-135+21239hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor] gb|EER88753.1| hypothetical protein SORBIDRAFT_10g025950 [So
ref|XP_008380344.1|10052.44e-05205PREDICTED: RNA-dependent RNA polymerase 6 [Malus domestica]