| name | 5'-sequence | 3'-sequence | length | description |
|---|
| rank | score | Evalue | region1 | region2 | frame | rank | score | Evalue | region1 | region2 | frame |
|---|
| ref|XP_004242994.1| | 1 | 90.1 | 2e-17 | 85-504 | 64-206 | +1 | | | | | | | 1007 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Solanum lycopersicum]
|
| ref|XP_006343727.1| | 2 | 88.2 | 1e-16 | 79-504 | 70-214 | +1 | | | | | | | 1015 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Solanum tuberosum]
|
| gb|KGN61063.1| | 3 | 80.1 | 4e-14 | 211-504 | 89-176 | +1 | | | | | | | 975 | hypothetical protein Csa_2G036610 [Cucumis sativus]
|
| ref|XP_004162698.1| | 4 | 80.1 | 4e-14 | 211-504 | 89-176 | +1 | | | | | | | 975 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis sativus]
|
| ref|XP_004144791.1| | 5 | 80.1 | 4e-14 | 211-504 | 89-176 | +1 | | | | | | | 975 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis sativus]
|
| ref|NP_001289533.1| | 6 | 79.7 | 6e-14 | 166-504 | 71-176 | +1 | | | | | | | 977 | DNA-directed RNA polymerase 3, chloroplastic [Nicotiana sylvestris] sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed R
|
| ref|XP_002528405.1| | 7 | 78.6 | 2e-13 | 232-504 | 99-186 | +1 | | | | | | | 1000 | DNA-directed RNA polymerase 3B, chloroplast precursor, putative [Ricinus communis] gb|EEF33998.1| DNA-directed RNA poly
|
| emb|CAN65186.1| | 8 | 78.6 | 2e-13 | 214-504 | 83-179 | +1 | | | | | | | 1312 | hypothetical protein VITISV_023905 [Vitis vinifera]
|
| gb|EPS64933.1| | 9 | 78.6 | 2e-13 | 100-504 | 17-152 | +1 | | | | | | | 952 | hypothetical protein M569_09836 [Genlisea aurea]
|
| ref|XP_008452554.1| | 10 | 77.4 | 4e-13 | 142-504 | 59-176 | +1 | | | | | | | 975 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Cucumis melo]
|
| sp|Q8L6J1.2|RPO3B_TOBAC | 11 | 77.0 | 6e-13 | 166-504 | 70-175 | +1 | | | | | | | 977 | RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName: Full=NictaRpoT3-tom; AltName: Full=T7 bacteriopha
|
| ref|XP_009608694.1| | 12 | 76.6 | 6e-13 | 166-504 | 12-117 | +1 | | | | | | | 919 | PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X1 [Nicotiana tomentosiformis]
|
| ref|XP_002274521.1| | 13 | 76.3 | 9e-13 | 214-504 | 83-179 | +1 | | | | | | | 979 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis vinifera]
|
| ref|XP_010273707.1| | 14 | 75.1 | 2e-12 | 175-504 | 43-153 | +1 | | | | | | | 845 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X2 [Nelumbo nucifera]
|
| ref|XP_007013879.1| | 15 | 75.1 | 2e-12 | 250-504 | 95-176 | +1 | | | | | | | 927 | DNA/RNA polymerases superfamily protein isoform 3 [Theobroma cacao] gb|EOY31498.1| DNA/RNA polymerases superfamily prot
|
| ref|XP_007013877.1| | 16 | 75.1 | 3e-12 | 250-504 | 95-176 | +1 | | | | | | | 978 | DNA/RNA polymerases superfamily protein isoform 1 [Theobroma cacao] gb|EOY31496.1| DNA/RNA polymerases superfamily prot
|
| ref|XP_010273705.1| | 17 | 74.7 | 3e-12 | 175-504 | 43-153 | +1 | | | | | | | 956 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1 [Nelumbo nucifera]
|
| ref|XP_011069585.1| | 18 | 73.9 | 5e-12 | 118-504 | 24-151 | +1 | | | | | | | 816 | PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X3 [Sesamum indicum]
|
| ref|XP_011069583.1| | 19 | 73.9 | 6e-12 | 118-504 | 24-151 | +1 | | | | | | | 952 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1 [Sesamum indicum]
|
| ref|XP_011069584.1| | 20 | 73.6 | 7e-12 | 118-504 | 24-151 | +1 | | | | | | | 884 | PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic isoform X2 [Sesamum indicum]
|
| gb|KJB53873.1| | 21 | 71.6 | 3e-11 | 250-504 | 89-170 | +1 | | | | | | | 972 | hypothetical protein B456_009G009300 [Gossypium raimondii]
|
| gb|KJB53874.1| | 22 | 71.6 | 3e-11 | 250-504 | 89-170 | +1 | | | | | | | 972 | hypothetical protein B456_009G009300 [Gossypium raimondii]
|
| gb|KHG29144.1| | 23 | 70.9 | 6e-11 | 250-504 | 89-170 | +1 | | | | | | | 1024 | DNA-directed RNA polymerase 3, chloroplastic -like protein [Gossypium arboreum]
|
| ref|XP_009366215.1| | 24 | 69.3 | 2e-10 | 250-504 | 90-171 | +1 | | | | | | | 972 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Pyrus x bretschneideri]
|
| gb|EYU37150.1| | 25 | 68.9 | 2e-10 | 259-504 | 59-139 | +1 | | | | | | | 941 | hypothetical protein MIMGU_mgv1a000925mg [Erythranthe guttata]
|
| ref|XP_011018068.1| | 26 | 68.6 | 3e-10 | 250-504 | 101-182 | +1 | | | | | | | 983 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Populus euphratica]
|
| ref|XP_007203225.1| | 27 | 65.9 | 2e-09 | 250-504 | 94-175 | +1 | | | | | | | 976 | hypothetical protein PRUPE_ppa000868mg [Prunus persica] gb|EMJ04424.1| hypothetical protein PRUPE_ppa000868mg [Prunus pe
|
| ref|XP_010526301.1| | 28 | 65.9 | 2e-09 | 274-504 | 131-204 | +1 | | | | | | | 1003 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Tarenaya hassleriana]
|
| ref|XP_002325119.1| | 29 | 65.5 | 3e-09 | 262-504 | 4-81 | +1 | | | | | | | 882 | DNA-directed RNA polymerase family protein [Populus trichocarpa] gb|EEF03684.1| DNA-directed RNA polymerase family prote
|
| gb|KFK32677.1| | 30 | 65.1 | 4e-09 | 271-504 | 108-182 | +1 | | | | | | | 980 | hypothetical protein AALP_AA6G274400 [Arabis alpina]
|
| ref|XP_010048766.1| | 31 | 63.9 | 1e-08 | 274-504 | 113-186 | +1 | | | | | | | 987 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Eucalyptus grandis]
|
| ref|XP_009140522.1| | 32 | 63.9 | 1e-08 | 265-504 | 99-175 | +1 | | | | | | | 973 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Brassica rapa]
|
| emb|CDX76837.1| | 33 | 63.5 | 1e-08 | 265-504 | 100-173 | +1 | | | | | | | 971 | BnaC08g34230D [Brassica napus]
|
| ref|XP_009117246.1| | 34 | 63.5 | 1e-08 | 265-504 | 108-181 | +1 | | | | | | | 979 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Brassica rapa]
|
| emb|CDY34797.1| | 35 | 63.5 | 1e-08 | 265-504 | 89-162 | +1 | | | | | | | 960 | BnaA09g41640D [Brassica napus]
|
| emb|CDY20283.1| | 37 | 63.2 | 2e-08 | 271-504 | 104-178 | +1 | | | | | | | 976 | BnaC04g36730D [Brassica napus]
|
| emb|CDY39695.1| | 38 | 63.2 | 2e-08 | 271-504 | 101-175 | +1 | | | | | | | 973 | BnaA04g14120D [Brassica napus]
|
| ref|XP_011033373.1| | 40 | 62.8 | 3e-08 | 250-504 | 100-181 | +1 | | | | | | | 982 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Populus euphratica]
|
| ref|XP_002308414.1| | 41 | 62.8 | 3e-08 | 250-504 | 100-181 | +1 | | | | | | | 982 | hypothetical protein POPTR_0006s19490g [Populus trichocarpa] gb|EEE91937.1| hypothetical protein POPTR_0006s19490g [Popu
|
| ref|XP_004287148.1| | 42 | 62.4 | 3e-08 | 274-504 | 99-172 | +1 | | | | | | | 973 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Fragaria vesca subsp. vesca]
|
| ref|XP_006404912.1| | 44 | 62.0 | 5e-08 | 271-504 | 121-195 | +1 | | | | | | | 993 | hypothetical protein EUTSA_v10000030mg [Eutrema salsugineum] gb|ESQ46365.1| hypothetical protein EUTSA_v10000030mg [Eutr
|
| emb|CAA74929.1| | 36 | 61.6 | 2e-08 | 271-504 | 121-195 | +1 | | | | | | | 282 | DNA-directed RNA polymerase [Arabidopsis thaliana]
|
| dbj|BAE98468.1| | 43 | 61.6 | 5e-08 | 271-504 | 121-195 | +1 | | | | | | | 786 | chloroplast single subunit DNA-dependent RNA polymerase [Arabidopsis thaliana]
|
| ref|NP_973525.2| | 45 | 61.6 | 6e-08 | 271-504 | 121-195 | +1 | | | | | | | 895 | DNA-directed RNA polymerase 3 [Arabidopsis thaliana] gb|AEC07530.1| DNA-directed RNA polymerase 3 [Arabidopsis thaliana]
|
| ref|NP_179989.1| | 46 | 61.6 | 6e-08 | 271-504 | 121-195 | +1 | | | | | | | 993 | DNA-directed RNA polymerase 3 [Arabidopsis thaliana] sp|O24600.1|RPOT3_ARATH RecName: Full=DNA-directed RNA polymerase 3
|
| ref|XP_002880548.1| | 47 | 61.6 | 6e-08 | 271-504 | 118-192 | +1 | | | | | | | 990 | PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata] gb|EFH56807.1| PDE319/SCA3 [Arabidopsis lyrata subsp. lyrata]
|
| ref|XP_010417157.1| | 48 | 61.2 | 8e-08 | 271-504 | 120-194 | +1 | | | | | | | 886 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X2 [Camelina sativa]
|
| ref|XP_010472411.1| | 49 | 61.2 | 8e-08 | 271-504 | 123-197 | +1 | | | | | | | 995 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like isoform X1 [Camelina sativa] ref|XP_010472413.1| PREDICTED
|
| ref|XP_010417156.1| | 50 | 61.2 | 9e-08 | 271-504 | 120-194 | +1 | | | | | | | 992 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic isoform X1 [Camelina sativa]
|
| ref|XP_008352207.1| | 39 | 60.8 | 2e-08 | 250-504 | 92-173 | +1 | | | | | | | 271 | PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 3, chloroplastic-like [Malus domestica]
|
| ref|XP_010429368.1| | 51 | 60.8 | 9e-08 | 271-504 | 123-197 | +1 | | | | | | | 995 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Camelina sativa]
|
| ref|XP_008394282.1| | 52 | 60.8 | 1e-07 | 250-504 | 92-173 | +1 | | | | | | | 982 | PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 3, chloroplastic [Malus domestica]
|
| ref|XP_010687637.1| | 53 | 60.5 | 2e-07 | 274-504 | 120-192 | +1 | | | | | | | 991 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Beta vulgaris subsp. vulgaris]
|
| emb|CAC80139.1| | 54 | 60.1 | 2e-07 | 178-504 | 96-190 | +1 | | | | | | | 989 | DNA-dependent RNA polymerase [Spinacia oleracea]
|
| gb|KDO62290.1| | 55 | 59.7 | 2e-07 | 193-504 | 114-211 | +1 | | | | | | | 835 | hypothetical protein CISIN_1g001795mg [Citrus sinensis]
|
| gb|KDO62288.1| | 56 | 59.7 | 2e-07 | 193-504 | 114-211 | +1 | | | | | | | 986 | hypothetical protein CISIN_1g001795mg [Citrus sinensis]
|
| gb|KDO62289.1| | 57 | 59.7 | 2e-07 | 193-504 | 114-211 | +1 | | | | | | | 952 | hypothetical protein CISIN_1g001795mg [Citrus sinensis]
|
| emb|CBL69150.1| | 58 | 59.7 | 2e-07 | 250-504 | 107-182 | +1 | | | | | | | 985 | RNA polymerase [Nuphar advena]
|
| ref|XP_006474044.1| | 59 | 59.7 | 2e-07 | 193-504 | 111-208 | +1 | | | | | | | 1009 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Citrus sinensis]
|
| gb|KDO62286.1| | 60 | 59.7 | 3e-07 | 193-504 | 114-211 | +1 | | | | | | | 1012 | hypothetical protein CISIN_1g001795mg [Citrus sinensis] gb|KDO62287.1| hypothetical protein CISIN_1g001795mg [Citrus sin
|
| gb|KDO62285.1| | 61 | 59.7 | 3e-07 | 193-504 | 114-211 | +1 | | | | | | | 1012 | hypothetical protein CISIN_1g001795mg [Citrus sinensis]
|
| ref|XP_006296121.1| | 62 | 59.3 | 3e-07 | 271-504 | 119-193 | +1 | | | | | | | 991 | hypothetical protein CARUB_v10025273mg [Capsella rubella] gb|EOA29019.1| hypothetical protein CARUB_v10025273mg [Capsell
|
| ref|XP_006453567.1| | 63 | 58.9 | 4e-07 | 211-504 | 122-211 | +1 | | | | | | | 986 | hypothetical protein CICLE_v10007333mg [Citrus clementina] gb|ESR66807.1| hypothetical protein CICLE_v10007333mg [Citrus
|
| ref|XP_006453566.1| | 64 | 58.5 | 5e-07 | 211-504 | 122-211 | +1 | | | | | | | 1012 | hypothetical protein CICLE_v10007333mg [Citrus clementina] gb|ESR66806.1| hypothetical protein CICLE_v10007333mg [Citrus
|
| ref|XP_003525896.1| | 65 | 57.8 | 1e-06 | 265-504 | 101-171 | +1 | | | | | | | 973 | PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic-like [Glycine max]
|
| ref|XP_006578468.1| | 66 | 54.3 | 1e-05 | 265-504 | 97-167 | +1 | | | | | | | 972 | PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic-like isoform X1 [Glycine max]
|
| ref|XP_006578469.1| | 67 | 54.3 | 1e-05 | 265-504 | 97-167 | +1 | | | | | | | 969 | PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic-like isoform X2 [Glycine max]
|
| ref|XP_006578470.1| | 68 | 54.3 | 1e-05 | 265-504 | 97-167 | +1 | | | | | | | 931 | PREDICTED: DNA-directed RNA polymerase 3B, chloroplastic-like isoform X3 [Glycine max]
|
| ref|XP_010472412.1| | 69 | 53.9 | 1e-05 | 283-504 | 1-71 | +1 | | | | | | | 869 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like isoform X2 [Camelina sativa]
|
| ref|XP_008243031.1| | 70 | 52.0 | 6e-05 | | | | | | | | | | 976 | PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Prunus mume]
|