Clone JMFN028F13 [sequences]

contigF:000314 contigR:

name	5'-sequence						3'-sequence						length	description
name	rank	score	Evalue	region1	region2	frame	rank	score	Evalue	region1	region2	frame	length	description
gb\|AAC67200.1\|	2	60.8	1e-07	183-434	424-509	+3							1402	putative retroelement pol polyprotein [Arabidopsis thaliana]
gb\|AAK51235.1\|AF287471_1	4	60.5	2e-07	183-533	417-535	+3							1453	polyprotein [Arabidopsis thaliana]
emb\|CAN76151.1\|	5	60.5	2e-07	183-533	206-331	+3							979	hypothetical protein VITISV_012673 [Vitis vinifera]
emb\|CAE05450.3\|	1	59.3	8e-08	177-485	400-506	+3							1131	OSJNBa0073E02.10 [Oryza sativa Japonica Group]
emb\|CAH67225.1\|	3	58.9	1e-07	177-485	400-506	+3							1087	OSIGBa0145M07.7 [Oryza sativa Indica Group]
emb\|CAC37623.1\|	8	57.8	1e-06	189-533	418-534	+3							1466	copia-like polyprotein [Arabidopsis thaliana]
gb\|AAD43604.1\|AC005698_3	9	57.0	2e-06	183-440	294-381	+3							1309	T3P18.3 [Arabidopsis thaliana]
emb\|CBI31290.3\|	10	56.2	4e-06	183-485	538-647	+3							1201	unnamed protein product [Vitis vinifera]
gb\|AAD21687.1\|	11	55.5	6e-06	189-452	416-516	+3							1415	Strong similarity to gi\|3600044 T12H20.12 protease homolog from Arabidopsis thaliana BAC gb\|AF080119 and is a member of
gb\|KFL90571.1\|	13	53.1	1e-05	177-443	105-203	+3							230	polyprotein [Acetobacter malorum]
emb\|CAN75270.1\|	15	53.1	3e-05	180-524	200-321	+3							774	hypothetical protein VITISV_022685 [Vitis vinifera]
dbj\|BAK41512.1\|	16	53.1	4e-05	177-482	416-522	+3							1048	C-end truncated polyprotein [Arabidopsis thaliana]
dbj\|BAA87949.1\|	17	52.8	4e-05	177-482	386-492	+3							847	retrotransposon homolog, partial [Arabidopsis thaliana]
gb\|AAK62793.1\|AC027036_14	18	52.8	4e-05	177-482	421-527	+3							1466	polyprotein, putative [Arabidopsis thaliana] dbj\|BAK41510.1\| polyprotein [Arabidopsis thaliana]
dbj\|BAA78423.1\|	19	52.8	4e-05	177-482	386-492	+3							1431	polyprotein [Arabidopsis thaliana]
gb\|AAK62788.1\|AC027036_9	20	52.8	4e-05	177-482	421-527	+3							1466	polyprotein, putative [Arabidopsis thaliana] dbj\|BAB84015.1\| polyprotein [Arabidopsis thaliana]
dbj\|BAK41511.1\|	22	52.8	4e-05	177-482	421-527	+3							1466	polyprotein [Arabidopsis thaliana]
emb\|CAN82859.1\|	25	52.8	5e-05	183-482	353-457	+3							1578	hypothetical protein VITISV_025377 [Vitis vinifera]
emb\|CAN77680.1\|	26	52.4	5e-05	183-533	389-508	+3							590	hypothetical protein VITISV_040762 [Vitis vinifera]
gb\|AFP55537.1\|	29	51.6	1e-04	183-437	441-531	+3							1384	retrotransposon polyprotein [Rosa rugosa]
emb\|CAN69367.1\|	30	51.2	1e-04	177-434	330-433	+3							1083	hypothetical protein VITISV_035520 [Vitis vinifera]
gb\|AAC61290.1\|	32	50.8	2e-04	183-431	406-490	+3							1149	putative retroelement pol polyprotein [Arabidopsis thaliana]
dbj\|BAM44532.1\|	33	50.8	2e-04	177-482	419-525	+3							1421	polyprotein [Arabidopsis thaliana]
gb\|AAF69172.1\|AC007915_24	37	50.8	2e-04	183-425	416-498	+3							1313	F27F5.11 [Arabidopsis thaliana]
emb\|CDY24759.1\|	38	50.8	2e-04	186-482	305-402	+3							1271	BnaC04g13640D [Brassica napus]
gb\|AAC79110.1\|	39	50.8	2e-04	177-482	400-506	+3							1456	putative polyprotein of LTR transposon [Arabidopsis thaliana] emb\|CAB77781.1\| putative polyprotein of LTR transposon [Ar
dbj\|BAA78424.1\|	41	50.8	2e-04	177-482	274-380	+3							1330	polyprotein [Arabidopsis thaliana] dbj\|BAM44533.1\| polyprotein [Arabidopsis thaliana]
dbj\|BAM42647.1\|	42	50.8	2e-04	177-482	419-525	+3							1475	polyprotein [Arabidopsis thaliana] dbj\|BAM42648.1\| polyprotein [Arabidopsis thaliana]
dbj\|BAM42650.1\|	43	50.4	2e-04	177-482	419-525	+3							1475	Polyprotein [Arabidopsis thaliana]
dbj\|BAA78426.1\|	44	50.4	2e-04	177-482	419-525	+3							1475	polyprotein [Arabidopsis thaliana]
dbj\|BAM42649.1\|	45	50.4	2e-04	177-482	419-525	+3							1475	Polyprotein [Arabidopsis thaliana]
dbj\|BAM42646.1\|	46	50.4	2e-04	177-482	419-525	+3							1475	polyprotein [Arabidopsis thaliana]
emb\|CCH50966.1\|	47	50.1	3e-04	177-533	681-809	+3							1670	T4.5 [Malus x robusta]
emb\|CAN81355.1\|	48	50.1	4e-04	177-533	432-561	+3							1402	hypothetical protein VITISV_039158 [Vitis vinifera]
emb\|CAN75700.1\|	49	50.1	4e-04	183-323	484-530	+3							1099	hypothetical protein VITISV_035987 [Vitis vinifera]
dbj\|BAM44531.1\|	50	50.1	4e-04	177-482	419-525	+3							1421	polyprotein [Arabidopsis thaliana]
dbj\|BAA78427.1\|	51	49.7	4e-04	177-482	419-525	+3							1421	polyprotein [Arabidopsis thaliana]
dbj\|BAM44530.1\|	55	49.7	4e-04	177-482	419-525	+3							1421	polyprotein [Arabidopsis thaliana]
dbj\|BAM44529.1\|	56	49.7	4e-04	177-482	419-525	+3							1421	polyprotein [Arabidopsis thaliana]
emb\|CAN73071.1\|	58	49.7	5e-04	177-482	384-490	+3							1239	hypothetical protein VITISV_032383 [Vitis vinifera]
gb\|ABG00000.1\|	21	49.3	4e-05	177-485	1371-1477	+3							2074	retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
gb\|AAK09230.1\|AC084320_17	28	49.3	1e-04	183-482	406-506	+3							1219	putative copia-like retrotransposon Hopscotch polyprotein [Oryza sativa Japonica Group] gb\|AAK72882.1\|AC091123_1 putati
dbj\|BAM44535.1\|	60	49.3	7e-04	177-482	419-525	+3							1475	polyprotein [Arabidopsis thaliana]
dbj\|BAM44534.1\|	61	49.3	7e-04	177-482	419-525	+3							1475	polyprotein [Arabidopsis thaliana]
gb\|AAU10682.1\|	54	48.1	4e-04	177-485	405-510	+3							1210	putative polyprotein [Oryza sativa Japonica Group]
gb\|AAU43956.1\|	57	48.1	5e-04	177-482	409-518	+3							1447	unknown protein [Oryza sativa Japonica Group] gb\|AAU44069.1\| putative polyprotein [Oryza sativa Japonica Group]
emb\|CAN71996.1\|	35	47.8	2e-04	177-482	241-355	+3							1087	hypothetical protein VITISV_023485 [Vitis vinifera]
gb\|AAN04167.1\|	34	44.3	2e-04	183-482	311-411	+3							1042	Putative copia-like retrotransposon polyprotein [Oryza sativa Japonica Group] gb\|AAP53032.1\| retrotransposon protein, p
ref\|XP_008391036.1\|	14	8	53.1										633	PREDICTED: uncharacterized protein LOC103453268 [Malus domestica]
ref\|XP_008366645.1\|	62	7	48.9										603	PREDICTED: uncharacterized protein LOC103430287 [Malus domestica]
ref\|XP_008347011.1\|	64	6	48.9										1293	PREDICTED: uncharacterized protein LOC103410016 [Malus domestica]
ref\|XP_008237389.1\|	7	4	58.2										919	PREDICTED: uncharacterized protein LOC103336134, partial [Prunus mume]
ref\|XP_008356690.1\|	31	4	50.8										711	PREDICTED: uncharacterized protein LOC103420404 [Malus domestica]
ref\|XP_010430968.1\|	59	4	49.3										618	PREDICTED: uncharacterized protein LOC104715244 [Camelina sativa]
ref\|XP_010271838.1\|	40	3	48.1										124	PREDICTED: uncharacterized protein LOC104607813 [Nelumbo nucifera]
ref\|XP_010418880.1\|	52	3	49.7										441	PREDICTED: uncharacterized protein LOC104704503 [Camelina sativa]
ref\|XP_008366369.1\|	53	3	49.7										590	PREDICTED: uncharacterized protein LOC103430013 [Malus domestica]
ref\|XP_008222569.1\|	12	2	54.7										465	PREDICTED: uncharacterized protein LOC103322432 [Prunus mume]
ref\|XP_008386299.1\|	23	2	52.8										1255	PREDICTED: uncharacterized protein LOC103448812 [Malus domestica]
ref\|XP_008390627.1\|	6	1	58.9										1159	PREDICTED: uncharacterized protein LOC103452871 [Malus domestica]
ref\|XP_008352890.1\|	27	1	51.6										700	PREDICTED: uncharacterized protein LOC103416421 [Malus domestica]
ref\|XP_008385082.1\|	36	1	50.8										590	PREDICTED: uncharacterized protein LOC103447671 [Malus domestica]
ref\|XP_008375724.1\|	24	0	52.4										657	PREDICTED: uncharacterized protein LOC103438960 [Malus domestica]
ref\|XP_004513130.1\|	63	0	48.9										752	PREDICTED: uncharacterized protein LOC101488260 [Cicer arietinum]