List of clones in pair P000053.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001G18Sequence594005495 (15)ref|XP_009589735.1|3e-81PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMFF002F02Sequence570005878 (27)emb|CDP02281.1|1e-38unnamed protein product [Coffea canephora]681005495 (15)ref|XP_009589735.1|5e-82PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMFF009C10Sequence565005878 (27)emb|CDP02281.1|2e-54unnamed protein product [Coffea canephora]605005495 (15)ref|XP_009589735.1|2e-80PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMFF013N06Sequence521005878 (27)emb|CDP02281.1|1e-45unnamed protein product [Coffea canephora]647005495 (15)ref|XP_009589735.1|4e-89PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMFF019A18Sequence563005878 (27)emb|CDP02281.1|1e-54unnamed protein product [Coffea canephora]712005495 (15)ref|XP_009589735.1|1e-123PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMFF027I04Sequence523005878 (27)emb|CDP02281.1|5e-55unnamed protein product [Coffea canephora]
JMFF042A18Sequence635005878 (27)ref|XP_006373346.1|7e-80hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo618005495 (15)ref|XP_009589735.1|2e-79PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMFF042E16Sequence654005878 (27)ref|XP_006373346.1|3e-72hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo570005495 (15)ref|XP_009589735.1|8e-80PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMFF045M22Sequence678005878 (27)ref|XP_006373346.1|2e-76hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo304005495 (15)ref|XP_007032653.1|1e-48Cyclic nucleotide-regulated ion channel family protein isoform 1 [Theobroma cac
JMFS007B02Sequence314005878 (27)emb|CDP02281.1|4e-28unnamed protein product [Coffea canephora]
JMFS016B11Sequence627005878 (27)ref|XP_006373346.1|1e-83hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo
JMFS022G03Sequence578005878 (27)emb|CDP02281.1|2e-45unnamed protein product [Coffea canephora]
JMFS024E04Sequence584005878 (27)ref|XP_009589735.1|2e-70PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMFS046C05Sequence627005878 (27)ref|XP_007032654.1|1e-105Cyclic nucleotide-regulated ion channel family protein isoform 2, partial [Theo
JMFS046C07Sequence643005878 (27)ref|XP_006373346.1|7e-87hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo
JMFS053E05Sequence609005878 (27)ref|XP_006373346.1|3e-68hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo
JMFS079H01Sequence619005878 (27)ref|XP_009589735.1|2e-70PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMFS122E01Sequence543005878 (27)emb|CDP02281.1|2e-54unnamed protein product [Coffea canephora]
JMFS143F01Sequence626005878 (27)gb|AAU21294.1|1e-65DND1-like protein [Solanum tuberosum]
JMFS164E09Sequence589005878 (27)emb|CDP02281.1|4e-54unnamed protein product [Coffea canephora]
JMSF021O16Sequence701005878 (27)ref|XP_006373346.1|2e-75hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo690005495 (15)ref|XP_009589735.1|3e-96PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMSF023K18Sequence702005878 (27)ref|XP_006373346.1|2e-75hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo747005495 (15)ref|XP_009589735.1|2e-140PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMSF031P04Sequence683005878 (27)ref|XP_006373346.1|7e-79hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo651005495 (15)ref|XP_009589735.1|2e-103PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMSF034B11Sequence682005878 (27)ref|XP_009589735.1|5e-60PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]693005495 (15)ref|XP_009589735.1|5e-96PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMSF034L02Sequence682005878 (27)ref|XP_007032653.1|1e-71Cyclic nucleotide-regulated ion channel family protein isoform 1 [Theobroma cac617005495 (15)ref|XP_009589735.1|7e-91PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMSF036P08Sequence677005878 (27)ref|XP_006373346.1|7e-79hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo675005495 (15)ref|XP_009589735.1|4e-106PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]
JMSF041F23Sequence770005878 (27)ref|XP_006373346.1|1e-113hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo441005495 (15)ref|XP_009589735.1|2e-52PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis]

Contig 5878 BLAST Hits against nr-aa DB Show

Contig 5495 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig005878============================================ 991         ============================================Contig005495============================================ 862
  22 --------------------------------------------------------->JMFF002F02                                                                  <----------------------------------------------------------------------------rJMFF002F02  
 125        -------------------------------------------------------------------->JMSF034L02                                                 <-----------------------------------------------------------------------rJMSF034L02  
 127              --------------------------------------------------------------->JMFF042A18                                                      <-----------------------------------------------------------------------rJMFF042A18  
 128         ---------------------------------------------------->JMFF013N06                                                               <-------------------------------------------------------------------------rJMFF013N06  
 128         -------------------------------------------------------->JMFF009C10                                                                 <-------------------------------------------------------------------rJMFF009C10  
 128         -------------------------------------------------------------------->JMSF034B11                                        <-------------------------------------------------------------------------------rJMSF034B11  
 136         ------------------------------------------------------------------->JMSF036P08                                           <-----------------------------------------------------------------------------rJMSF036P08  
 137         ------------------------------------------------------------------>JMSF021O16                                          <-------------------------------------------------------------------------------rJMSF021O16  
 145         ----------------------------------------------------------------->JMFF042E16                                                          <---------------------------------------------------------------rJMFF042E16  
 147         -------------------------------------------------------------------->JMSF031P04                                          <---------------------------------------------------------------------------rJMSF031P04  
 174         -------------------------------------------------------->JMFF019A18                                            <----------------------------------------------------------------------------------rJMFF019A18  
 196              ----------------------------------------------------------------------------->JMSF041F23                                                      <-------------------------------------------------rJMSF041F23  
 199         ------------------------------------------------------------------>JMSF023K18                            <--------------------------------------------------------------------------------------rJMSF023K18  
 271        -------------------------------------------------------------------->JMFF045M22                                                                     <----------------------------------rJMFF045M22  
                    -------------------------------------------------------------->JMFS016B11-                        
                ------------------------------------------------------>JMFS122E01-                                    
                    ---------------------------------------------------------------->JMFS046C07-                      
               ------------------------------------------------------------->JMFS053E05-                              
                                          -------------------------------------------------------------->JMFS046C05-  
            ----------------------------------------------------------->JMFS164E09-                                   
            -------------------------------------------------------------->JMFS143F01-                                
                    ------------------------------->JMFS007B02-                                                       
                   ---------------------------------------------------------->JMFS024E04-                             
                  ------------------->JMSF007D15#                                                                     
                 ---------------------------------------------------->JMFF027I04-                                     
       ---------------------------------------------------------->JMFS022G03-                                         
               -------------------------------------------------------------->JMFS079H01-                             
                                                                                                                                              <--------------------------------------------------------------------rJMFF001G18-