Alignment Contig 999

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF050J20+ GGGGGGAGCAGAGGAAGCACGTACTGTTCTCTCCCCTGACCAATTCGACCTTCGGAGTGT
JMFF043I14+ GGGGGAGCAGAGGAAGCACGTACTGTTCTCTCCCCTGACCAATTCGACCTTCGGAGTGT
JMFF022G01+ GGGGAGCAGAGGAAGCACGTACTGTTCTCTCCCCTGACCAATTCGACCTTCGGAGTGT
JMFF007I04+ GGGGTAGCAGAGGAAGCACGTACTGTTCTCTCCCCTGACCAATTCGACCTTCGGAGTGT
JMFF005A24+ GGGGTAGCAGAGGAAGCACGTACTGTTCTCTCCCCTGACCAATTCGACCTTCGGAGTGT
JMFF025O04+ GGGGGAGCAGAGGAAGCACGTACTGTTCTCTCCCCTGACCAATTCGACCTTCGGAGTGT
____________________________________________________________
consensus GGGGGGAGCAGAGGAAGCACGTACTGTTCTCTCCCCTGACCAATTCGACCTTCGGAGTGT

. : . : . : . : . : . :
JMSF050J20+ GTTTTTTGAAGAAAGAAAATGGAGTTGGGGTGGGTTGTGTTCTTGGTTGGGGTATTGGGT
JMFF043I14+ GTTTTTTGAAGAAAGAAAATGGAGTTGGGGTGGGTTGTGTTCTTGGTTGGGGTATTGGGT
JMFF022G01+ GTTTTTTGAAGAAAGAAAATGGAGTTGGGGTGGGTTATGTTCTTGGTTGGGGTATTGGGT
JMFF007I04+ GTTTTTTGAAGAAAGAAAATGGAGTTGGGGTGGGTTGTGTTCTTGGTTGGGGTATTGGGT
JMFF005A24+ GTTTTTTGAAGAAAGAAAATGGAGTTGGGGTGGGTTGTGTTCTTGGTTGGGGTATTGGGT
JMFF025O04+ GTTTTTTGAAGAAAGAAAATGGAGTTGGGGTGGGTTGTGTTCTTGGTTGGGGTATTGGGT
____________________________________________________________
consensus GTTTTTTGAAGAAAGAAAATGGAGTTGGGGTGGGTTGTGTTCTTGGTTGGGGTATTGGGT

. : . : . : . : . : . :
JMSF050J20+ TTAAGCAGCTTTTGGTGGGTGCTTGGGAGGGTGAATTGTTGGTACTATGAGAGAGTGAAG
JMFF043I14+ TTAAGCAGCTTTTGGTGGGTGCTTGGGAGGGTGAATTGTTGGTACTATGAGAGAGTGAAG
JMFF022G01+ TTAAGCAGCTTTTGGTGGGTGCTTGGGAGGGTGAATTGTTGGTACTATGAGAGAGTGAAT
JMFF007I04+ TTAAGCAGCTTTTGGTGGGTGCTTGGGAGGGTGAATTGTTGGTACTATGAGAGAGTGAAG
JMFF005A24+ TTAAGCAGCTTTTGGTGGGTGCTTGGGAGGGTGAATTGTTGGTACTATGAGAGAGTCAAG
JMFF025O04+ TTAAGCAGCTTTTGGTGGGTGCTTGGGAGGGTGAATTGTTGGTACTATGAGAGAGTGAAG
____________________________________________________________
consensus TTAAGCAGCTTTTGGTGGGTGCTTGGGAGGGTGAATTGTTGGTACTATGAGAGAGTGAAG

. : . : . : . : . : . :
JMSF050J20+ CTTGGTGATAAGAAGAGACTGAGTTTGCCTCCAGGTGATTTAGGTTGGCCTTTCATTGGC
JMFF043I14+ CTTGGTGATAAGAAGAGACTGAGTTTGCCTCCAGGTGATTTAGGTTGGCCTTTCATTGGC
JMFF022G01+ CTTGGTGATAAGAAGAGACTGAGTTTGCCTCCAGGTGATTTAGGTTGGCCTTTCATTGGC
JMFF007I04+ CTTGGTGATAAGAAGAGACTGAGTTTGCCTCCAGGTGATTTAGGTTGGCCTTTCATTGGC
JMFF005A24+ CTTGGTGATAAGAAGAGACTGAGTTTGCCTCCAGGTGATTTAGGTTGGCCTTTCATTGGC
JMFF025O04+ CTTGGTGATAAGAAGAGACTGAGTTTGCCTCCAGGTGATTTAGGTTGGCCTTTCATTGGC
____________________________________________________________
consensus CTTGGTGATAAGAAGAGACTGAGTTTGCCTCCAGGTGATTTAGGTTGGCCTTTCATTGGC

. : . : . : . : . : . :
JMSF050J20+ AACATGTGGTCTTTCCTCAGAGCTTTCAAGTCCTCCAACCCAGATTCCTTCATCTCCTCA
JMFF043I14+ AACATGTGGTCTTTCCTCAGAGCTTTCAAGTCCTCCAACCCAGATTCCTTCATCTCCTCA
JMFF022G01+ AACATGTGGTCTTTCCTCAGAGCTTTCAAGTCCTCCAACCCAGATTCCTTCATCTCCTCA
JMFF007I04+ AACATGTGGTCTTTCCTCAGAGCTTTCAAGTCCTCCAACCCAGATTCCTTCATCTCCTCA
JMFF005A24+ AACATGTGGTCTTTCCTCAGAGCTTTCAAGTCCTCCAACCCAGATTCCTTCATCTCCTCA
JMFF025O04+ AACATGTGGTCTTTCCTCAGAGCTTTCAAGTCCTCCAACCCAGATTCCTTCATCTCCTCA
____________________________________________________________
consensus AACATGTGGTCTTTCCTCAGAGCTTTCAAGTCCTCCAACCCAGATTCCTTCATCTCCTCA

. : . : . : . : . : . :
JMSF050J20+ TTTGTTTCCAGATATGGAGCANCTGGGATGTACAAGGCCTTCATGTTTGGTAGCCCAAGT
JMFF043I14+ TTTGTTTCCAGATATGGAGCAACTGGGATGTACAAGGCCTTCATGTTTGGTAGCCCAAGT
JMFF022G01+ TTTGTTTCCAGATATGGAGCAACTGGGATGTACAAGGCCTTCATGTTTGGTAGCCCAAGT
JMFF007I04+ TTTGTTTCCAGATATGGAGCAACTGGGATGTACAAGGCCTTCATGTTTGGTAGCCCAAGT
JMFF005A24+ TTTGTTTCCAGATATGGAGCAACTGGGATGTACAAGGCCTTCATGTTTGGTAGCCCAAGT
JMFF025O04+ TTTGTTTCCAGATATGGAGCAACTGGGATGTACAAGGCCTTCATGTTTGGTAGCCCAAGT
____________________________________________________________
consensus TTTGTTTCCAGATATGGAGCAACTGGGATGTACAAGGCCTTCATGTTTGGTAGCCCAAGT

. : . : . : . : . : . :
JMSF050J20+ ATCATCGTTACNACACC-GGATGCCTGCCGAAGAGTTCTGTCCGATGATGAAG
JMFF043I14+ ATCATCGTTACAACACC-GGATGCCTGCCGAAGAGTTCTGTCGGATGATGAAGCATTTCA
JMFF022G01+ ATCATCGTTACAACACCCGGATGCCTGCCGAAGAGTTCTGTCG
JMFF007I04+ ATCATCGTTACAACACC-GGATGCCTGCCGAAGAGTTCTGTCGGATGATGAAGCATTTCA
JMFF005A24+ ATCATCGTTACAACACC-GGATGCCTGCCGAAGAGTTCTGTCGGATGATGAAGCATTTCA
JMFF025O04+ ATCATCGTTACAACACC-GGATGCCTGCCGAAGAGTTCTGTCGGATGATGAAGCATTTCA
____________________________________________________________
consensus ATCATCGTTACAACACC-GGATGCCTGCCGAAGAGTTCTGTCGGATGATGAAGCATTTCA

. : . : . : . : . : . :
JMFF043I14+ GCCTGGCTGGCCTGTTTCCACCATGGAACTCATAGGCAGAAATTCTTTCATTGGCATTTC
JMFF007I04+ GCCTGGCTGGCCTGTTTCCACCATGGAACTCATAGGCAGAAAGTCTTTCATTGGCATTTC
JMFF005A24+ GCCTGGCTGGCCTGTTTCCACCATGGAACTCATA
JMFF025O04+ GCCTGGCTGGCCTGTTTCCACCATGGAACTCATAGGCAGAAAGTCTTTCATTGGCATTTC
____________________________________________________________
consensus GCCTGGCTGGCCTGTTTCCACCATGGAACTCATAGGCAGAAAGTCTTTCATTGGCATTTC

. : . : . : . : . : . :
JMFF043I14+ TTTCGAAGAGCACAAGCGTTTGCGCAAGCTGACAGCCGCCCCTGTGAATGGGCACGAGGC
JMFF007I04+ TTTCGAAGAGCACAAGCGTTTGCGCAAGCTGACAGCCGCCCCTGTGAATGGGCACGAGGC
JMFF025O04+ TTTCGAAGAGCACAAGCGTTTGCGCAAGCTGACAGCCGCCCCTGTGAATGGGCACGAGGC
____________________________________________________________
consensus TTTCGAAGAGCACAAGCGTTTGCGCAAGCTGACAGCCGCCCCTGTGAATGGGCACGAGGC

. : . : . : . : . : . :
JMFF043I14+ ATTGTCTTTTTACATTGACTACATCGAANCAAATGTGAAGATAGCACTGGAGAAATGGGC
JMFF007I04+ ATTGTCTTTTTACATTGACTACATC
JMFF025O04+ ATTGTCTTTTTACATTGACTACATCGAACAAAATGTGAA
____________________________________________________________
consensus ATTGTCTTTTTACATTGACTACATCGAACAAAATGTGAAGATAGCACTGGAGAAATGGGC

. : . : . : . : . : . :
JMFF043I14+ TTCCATGGGAGAGATAGAGTTCTTAACACAGCTT
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consensus TTCCATGGGAGAGATAGAGTTCTTAACACAGCTT