Alignment Contig 9969

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF023C01+ TNGACAAACGGATATACTCATCGAGCATGCATAATATCCTGAAGAGGAAAGGACCAAAAG
rJMSF014E05+ TCGAGCATGCATAATATCCTGAAGAGGAAAGGACCAAAAG
rJMSF030P24+ TCGAGCATGCATAATATCCTGAAGAGGAAAGGACCAAAAG
rJMFF010O07+ GCATAATATCCTGAAGAGGAAAGGACCAAAAG
rJMFF005L14+ AATATCCTGAAGAGGAAAGGACCAAAAG
rJMFF017K22+ TCGAGCATGCATAATATCCTGAAGAGGAAAGGACCAAAAG
____________________________________________________________
consensus TNGACAAACGGATATACTCATCGAGCATGCATAATATCCTGAAGAGGAAAGGACCAAAAG

. : . : . : . : . : . :
rJMSF023C01+ TATCTCACTTTTCCCCTTCAAGTATGCCAGTTAATCAGTCATTACAGATGGATGGAAGCA
rJMSF014E05+ TATCTCACTTTTCCCCTTCAAGTATGCCAGTTAATCAGTCATTACAGATGGATGGAAGCA
rJMSF030P24+ TATCTCACTTTTCCCCTTCNAGTATGCCAGTTAATCAGTCANTACAGATGGATGGAAGCA
rJMFF010O07+ TATCTCACTTTTCCCCTTCAAGTATGCCAGTTAATCAGTCATTACAGATGGATGGAAGCA
rJMFF005L14+ TATCTCACTTTTCCCCTTCAAGTATGCCAGTTAATCAGTCATTACAGATGGATGGAAGCA
rJMFF017K22+ TATCTCACTTTTCCCCTTCAAGTATGCCAGTTAATCAGTCATTACAGATGGATGGAAGCA
____________________________________________________________
consensus TATCTCACTTTTCCCCTTCAAGTATGCCAGTTAATCAGTCATTACAGATGGATGGAAGCA

. : . : . : . : . : . :
rJMSF023C01+ GTCTTGGTACTGAGAGGAGGGGGGGTTTTGAATGACAACCAAAAAAGCATAAAACAAACA
rJMSF014E05+ GTCTTGGTACTGAGAGGAGGGGGGGTTTTGAATGACAACCAAAAAAGCATAAAACAAACA
rJMSF030P24+ GTCTTGGTACTGAGAGGAGGGGGGGTTTTGAATGACAACCAAAAAAGCATAAAACAAACA
rJMFF010O07+ GTCTTGGTACTGAGAGGAGGGGGGGTTTTGAATGACAACCAAAAAAGCATAAAACAAACA
rJMFF005L14+ GTCTTGGTACTGAGAGGAGGGGGGGTTTTGAATGACAACCAAAAAAGCATAAAACAAACA
rJMFF017K22+ GTCTTGGTACTGAGAGGAGGGGGGGTTTTGAATGACAACCAAAAAAGCATAAAACAAACA
____________________________________________________________
consensus GTCTTGGTACTGAGAGGAGGGGGGGTTTTGAATGACAACCAAAAAAGCATAAAACAAACA

. : . : . : . : . : . :
rJMSF023C01+ ATTTCCTAACCAGCATAAAATTGCGTAAAACAACAAATTCCTAACAAAGCATAAAGTTGC
rJMSF014E05+ ATTTCCTAACCAGCATAAAATTGCGTAAAACAACAAATTCCTAACAAAGCATAAAGTTGC
rJMSF030P24+ ATTTCCTAACCAGCATAAAATTGCGTAAAACAACAAATTCCTAACAAAGCATAAAGTTGC
rJMFF010O07+ ATTTCCTAACCAGCATAAAATTGCGTAAAACAACAAATTCCTAACAAAGCATAAAGTTGC
rJMFF005L14+ ATTTCCTAACCAGCATAAAATTGCGTAAAACAACAAATTCCTAACAAAGCATAAAGTTGC
rJMFF017K22+ ATTTCCTAACCAGCATAAAATTGCGTAAAACAACAAATTCCTAACAAAGCATAAAGTTGC
rJMSF051I20+ CAGCATAAAATTGCGTAAAACAACAAATTCCTAACAAAGCATAAAGTTGC
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consensus ATTTCCTAACCAGCATAAAATTGCGTAAAACAACAAATTCCTAACAAAGCATAAAGTTGC

. : . : . : . : . : . :
rJMSF023C01+ CTTAGCTCGACATCATAACTTGATCAGCGGCTTGCAGTGCTTGGTTGGCGAAGAATCTCA
rJMSF014E05+ CTTAGCTCGACATCATAACTTGATCAGCGGCTTGCAGTGCTTGGTTGGCGAAGAATCTCA
rJMSF030P24+ CTTAGCTCGACATCATAACTTGATCAGCGGCTTGCAGTGCTTGGTTGGCGAAGAATCTCA
rJMFF010O07+ CTTAGCTCGACATCATAACTTGATCAGCGGCTTGCAGTGCTTGGTTGGCGAAGAATCTCA
rJMFF005L14+ CTTAGCTCGACATCATAACTTGATCAGCGGCTTGCAGTGCTTGGTTGGCGAAGAATCTCA
rJMFF017K22+ CTTAGCTCGACATCATAACTTGATCAGCGGCTTGCAGTGCTTGGTTGGCGAAGAATCTCA
rJMSF051I20+ CTTAGCTCGACATCATAACTTGATCAGCGGCTTGCAGTGCTTGGTTGGCGAAGAATCTCA
____________________________________________________________
consensus CTTAGCTCGACATCATAACTTGATCAGCGGCTTGCAGTGCTTGGTTGGCGAAGAATCTCA

. : . : . : . : . : . :
rJMSF023C01+ CATCGACGTCTGGATCCTCGCTAAGCTCAACCAAACATGGACGGATTGTCTTCTCCACAA
rJMSF014E05+ CATCGACGTCTGGATCCTCGCTAAGCTCAACCAAACATGGACGGATTGTCTTCTCCACAA
rJMSF030P24+ CATCGACGTCTGGATCCTCGCTAAGCTCAACCAAACATGGACGGATTGTCTTCTCCACAA
rJMFF010O07+ CATCGACGTCTGGATCCTCGCTAAGCTCAACCAAACATGGACGGATTGTCTTCTCCACAA
rJMFF005L14+ CATCGACGTCTGGATCCTCGCTAAGCTCAACCAAACATGGACGGATTGTCTTCTCCACAA
rJMFF017K22+ CATCGACGTCTGGATCCTCGCTAAGCTCAACCAAACATGGACGGATTGTCTTCTCCACAA
rJMSF051I20+ CATCGACGTCTGGATCCTCGCTAAGCTCAACCAAACATGGACGGATTGTCTTCTCCACAA
____________________________________________________________
consensus CATCGACGTCTGGATCCTCGCTAAGCTCAACCAAACATGGACGGATTGTCTTCTCCACAA

. : . : . : . : . : . :
rJMSF023C01+ CAGAATGGTCAACTATAGGAATGAGAGACTGCAACACCTTTGCCACATTGAACTTTATAT
rJMSF014E05+ CAGAATGGTCAACTATAGGAATGAGAGACTGCAACACCTTTGCCACATTGAACTTTATAT
rJMSF030P24+ CAGAATGGTCAACTATAGGAATGAGAGACTGCAACAC-TTTGCCACATTGAACTTTATAT
rJMFF010O07+ CAGAATGGTCAACTATAGGAATGAGAGACTGCAACACCTTTGCCACATTGAACTTTATAT
rJMFF005L14+ CAGAATGGTCAACTATAGGAATGAGAGACTGCAACACCTTTGCCACATTGAACTTTATAT
rJMFF017K22+ CAGAATGGTCAACTATAGGAATGAGAGACTGCAACACCTTTGCCACATTGAACTTTATAT
rJMSF051I20+ CAGAATGGTCAACTATAGGAATGAGAGACTGCAACACCTTTGCCACATTGAACTTTATAT
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consensus CAGAATGGTCAACTATAGGAATGAGAGACTGCAACACCTTTGCCACATTGAACTTTATAT

. : . : . : . : . : . :
rJMSF023C01+ TTGGTACCCTGTCCTTCGATGCAGTAATAATCACTGGCAGAAGTTTATTGCAAGTGATTT
rJMSF014E05+ TTGGTACCCTGTCCTTCGATGCAGTAATAATCACTGGCAGAAGTTTATTGCAAGTGATTT
rJMSF030P24+ TTGGTACCCTGTCCTTCGATGCAGTAATAATCACTGGCAGAAGTTTATTGCAAGTGATTT
rJMFF010O07+ TTGGTACCCTGTCCTTCGATGCAGTAATAATCACTGGCAGAAGTTTATTGCAAGTGATTT
rJMFF005L14+ TTGGTACCCTGTCCTTCGATGCAGTAATAATCACTGGCAGAAGTTTATTGCAAGTGATTT
rJMFF017K22+ TTGGTACCCTGTCCTTCGATGCAGTAATAATCACTGGCAGAAGTTTATTGCAAGTGATTT
rJMSF051I20+ TTGGTACCCTGTCCTTCGATGCAGTAATAATCACTGGCAGAAGTTTATTGCAAGTGATTT
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consensus TTGGTACCCTGTCCTTCGATGCAGTAATAATCACTGGCAGAAGTTTATTGCAAGTGATTT

. : . : . : . : . : . :
rJMSF023C01+ CTGAGCCCATTACTGGGGCAAGAAGAGATACTGCATGAAGAATGGTCATCCGATAAAGAT
rJMSF014E05+ CTGAGCCCATTACTGGGGCAAGAAGAGATACTGCATGAAGAATGGTCATCCGATAAAGAT
rJMSF030P24+ CTGAGCCCATTACTGGGGCAAGAAGAGATACTGCATGAAGAATGGTCATCCGATAAAGAT
rJMFF010O07+ CTGAGCCCATTACTGGGGCAAGAAGAGATACTGCATGAAGAATGGTCATCCGATAAAGAT
rJMFF005L14+ CTGAGCCCATTACTGGGGCAAGAAGAGATACTGCATGAAGAATGGTCATCCGATAAAGAT
rJMFF017K22+ CTGAGCCCATTACTGGGGCAAGAAGAGATACTGCATGAAGAATGGTCATCCGATAAAGAT
rJMSF051I20+ CTGAGCCCATTACTGGGGCAAGAAGAGATACTGCATGAAGAATGGTCATCCGATAAAGAT
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consensus CTGAGCCCATTACTGGGGCAAGAAGAGATACTGCATGAAGAATGGTCATCCGATAAAGAT

. : . : . : . : . : . :
rJMSF023C01+ AATGTGGGTCATTAATCATTTCCAGAACCTGTGGAATAATGTGCTGCATTGCCCATTCTG
rJMSF014E05+ AATGTGGGTCATTAATCATTTCCAGAACCTGTGGAATAATGTGCTGCATTGCCCATTCTG
rJMSF030P24+ AATGTGGGTCATTAATCATTTCCAGAACCTGTGGAATAATGTGCTGCATTGCCCATTCTG
rJMFF010O07+ AATGTGGGTCATTAATCATTTCCAGAACCTGTGGAATAATGTGCTGCATTGCCCATTCTG
rJMFF005L14+ AATGTGGGTCATTAATCATTTCCAGAACCTGTGGAATAATGTGCTGCATTGCCCATTCTG
rJMFF017K22+ AATGTGGGTCATTAATCATTTCCAGAACCTGTGGAATAATGTGCTGCATTGCCCATTCTG
rJMSF051I20+ AATGTGGGTCATTAATCATTTCCAGAACCTGTGGAATAATGTGCTGCATTGCCCATTCTG
____________________________________________________________
consensus AATGTGGGTCATTAATCATTTCCAGAACCTGTGGAATAATGTGCTGCATTGCCCATTCTG

. : . : . : . : . : . :
rJMSF023C01+ GTCCAAATTCCTCTGCAAGGCGCTTAACATTATTTGCAGCCGCATCTCTGATGGAGTAAA
rJMSF014E05+ GTCCAAATTCCTCTGCAAGGCGCTTAACATTATTTGCAGCCGCATCTCTGATGGAGTAAA
rJMSF030P24+ GTCCAAATTCCTCTGCAAGGCGCTTAACATTATTTGCAGCCGCATCTCTGATGGAGTAAA
rJMFF010O07+ GTCCAAATTCCTCTGCAAGGCGCTTAACATTATTTGCAGCCGCATCTCTGATGGAGTAAA
rJMFF005L14+ GTCCAAATTCCTCTGCAAGGCGCTTAACATTATTTGCAGCCGCATCTCTGATGGAGTAAA
rJMFF017K22+ GTCCAAATTCCTCTGCAAGGCGCTTAACATTATTTGCAGCCGCATCTCTGATGGAGTAAA
rJMSF051I20+ GTCCAAATTCCTCTGCAAGGCGCTTAACATTATTTGCAGCCGCATCTCTGATGGAGTAAA
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consensus GTCCAAATTCCTCTGCAAGGCGCTTAACATTATTTGCAGCCGCATCTCTGATGGAGTAAA

. : . : . : . : . : . :
rJMSF023C01+ CCTTATCTTTCAGCCATTGCATGCAAAGGGCCCCGAGCTTATCATCAAAAAACCCAACGC
rJMSF014E05+ CCTTATCTTTCAGCCATTGCATGCAAAGGGCCCCGAGCTTATCATCAAAAAACCCAACGC
rJMSF030P24+ CCTTATCTTTCAGCCATTGCATGCAAAGGGCCCCGAGCTTATCATCAAA
rJMFF010O07+ CCTTATCTTTCAGCCATTGCATGCAAAGGGCCCCGAGCTTATCATCAAAAAACCCAACGC
rJMFF005L14+ CCTTATCTTTCAGCCATTGCATGCAAAGGGCCCCGAGCTTATCATCAAAAAACCCAACGC
rJMFF017K22+ CCTTATCTTTCAGCCATTGCATGCAAAGGGCCCCGAGCTTATCATCAAAAAACCCAACGC
rJMSF051I20+ CCTTATCTTTCAGCCATTGCATGCAAAGGGCCCCGAGCTTATCATCAAAAAACCCAACGC
____________________________________________________________
consensus CCTTATCTTTCAGCCATTGCATGCAAAGGGCCCCGAGCTTATCATCAAAAAACCCAACGC

. : . : . : . : . : . :
rJMSF023C01+ CTAACTGACCGGCCAATAAAGGTATGTACTCTATTATTGCTAGGCGCACTCTCCAGTGTC
rJMSF014E05+ CTAACTGACTGGCCAATAAAGGTATGTACTCTATTATTGCTAGGCGCACTCTCCAGTGTC
rJMFF010O07+ CTAACTGACTGGCCAATAAAGGTATGTACTCTATTATTGCTAGGCGCACTCTCCAGTGTC
rJMFF005L14+ CTAACTGACTGGCCAATAAAGGTATGTACTCTATTATTGCTAGGCGCACTCTCCAGTGTC
rJMFF017K22+ CTAACTGACTGGCCAATAAAGGTATGTACTCTATTATTGCTAGGCGCACTCTCCAGTGTC
rJMSF051I20+ CTAACTGACTGGCCAATAAAGGTATGTACTCTATTATTGCTAGGCGCACTCTCCAGTGTC
____________________________________________________________
consensus CTAACTGACTGGCCAATAAAGGTATGTACTCTATTATTGCTAGGCGCACTCTCCAGTGTC

. : . : . : . : . : . :
rJMSF023C01+ TATCTTCTGCA
rJMSF014E05+ TATCTTCTGCAAGTTCAACTATAG
rJMFF010O07+ TATCTTCTGCAAGT
rJMFF005L14+ TATCTTCTGCA
rJMFF017K22+ TATCTTCTGCAAGT
rJMSF051I20+ TATCTTCTGCAAGTTCAACTATAGCAGGC
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consensus TATCTTCTGCAAGTTCAACTATAGCAGGC