Alignment Contig 9912

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF010E04+ TTCAAAATATTAGGTGATTATTTATTATTATGATTGATACTATTGATTACAATAGACACC
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consensus TTCAAAATATTAGGTGATTATTTATTATTATGATTGATACTATTGATTACAATAGACACC

. : . : . : . : . : . :
rJMSF010E04+ AAGCAACGTAGACCATCTAGTAATATATATATTTATGCTATTGCACTGTGAAGGATAATC
JMFF009N14- GACCATCTAGTAATATATATATTTATGCTATTGCACTGTGAAGGATAATC
rJMFF009N14+ TATATTTATGCTATTGCACTGTGAAGGATAATC
rJMFF026A05+ ATATATATTTATGCTATTGCACTGTGAAGGATAATC
JMFF026A05- GACCATCTAGTAATATATATATTTATGCTATTGCACTGTGAAGGATAATC
rJMFF022M14+ ATTTATGCTATTGCACTGTGAAGGATAATC
rJMFF019E03+ TTTATGCTATTGCACTGTGAAGGATAATC
rJMSF030B17+ GATAATC
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consensus AAGCAACGTAGACCATCTAGTAATATATATATTTATGCTATTGCACTGTGAAGGATAATC

. : . : . : . : . : . :
rJMSF010E04+ TGTCAACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA
JMFF009N14- TGTCAACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA
rJMFF009N14+ TGTCAACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA
rJMFF026A05+ TGTCAACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA
JMFF026A05- TGTCAACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA
rJMFF022M14+ TGTCAACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA
rJMSF005C13+ ACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA
rJMFF019E03+ TGTCAACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA
rJMSF007I23+ ACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA
rJMSF030B17+ TGTCAACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA
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consensus TGTCAACATATATTTAGCTTACATTATTAAGGTAAAATGGCGCATCAAGTGGAAAGGCAA

. : . : . : . : . : . :
rJMSF010E04+ ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA
JMFF009N14- ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA
rJMFF009N14+ ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA
rJMFF026A05+ ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA
JMFF026A05- ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA
rJMFF022M14+ ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA
rJMSF005C13+ ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA
rJMFF019E03+ ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA
rJMSF007I23+ ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA
rJMSF030B17+ ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA
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consensus ACAAATACATACACTAACTTGCAGTCGATGAAATCTTTGATGGTGTGGTGGATGGAGTTA

. : . : . : . : . : . :
rJMSF010E04+ CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG
JMFF009N14- CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG
rJMFF009N14+ CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG
rJMFF026A05+ CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG
JMFF026A05- CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG
rJMFF022M14+ CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG
rJMSF005C13+ CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG
rJMFF019E03+ CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG
rJMSF007I23+ CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG
rJMSF030B17+ CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG
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consensus CTTTCCAATAAGAGAAGAATCCTGGTCGGTTTCTTTGCGAGATGCCTCCCATAGTCGATG

. : . : . : . : . : . :
rJMSF010E04+ CTCAATGCCCAATTTCCTCAGCTCCATTAGCCCTTGTTCAACATCAACAGCATCATGTGA
JMFF009N14- CTCAATGCCCAATTTCC-CAGCTCCATTAGCCCTTGTTCAA
rJMFF009N14+ CTCAATGCCCAATTTCC-CAGCTCCATTAGCCCTTGTTCAA
rJMFF026A05+ CTCAATGCCCAATTTCC-CAGCTCCATTAGCCCTTGTTCAA
JMFF026A05- CTCAATGCCCAATTTCC-CAGCTCCATTAGCCCTTGTTCAA
rJMFF022M14+ CTCAATGCCCAATTTCCTCAGCTCCATTAGCCCTTGTTCAACATCAACAGCATCATGTGA
rJMSF005C13+ CTCAATGCCCAATTTCCTCAGCTCCATTAGCCCTTGTTCAACATCAACAGCATCATGTGA
rJMFF019E03+ CTCAATGCCCAATTTCCTCAGCTCCATTAGCCCTTGTTCAACATCAACAGCATCATGTGA
rJMSF007I23+ CTCAATGCCCAATTTCCTCAGCTCCATTAGCCCTTGTTCAACATCAACAGCATCATGTGA
rJMSF030B17+ CTCAATGCCCAATTTCCTCAGCTCCATTAGCCCTTGTTCAACATCAACAGCATCATGTGA
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consensus CTCAATGCCCAATTTCCTCAGCTCCATTAGCCCTTGTTCAACATCAACAGCATCATGTGA

. : . : . : . : . : . :
rJMSF010E04+ GGTTGGTGATTCTGCACTGCGGCCGATCCAAAATTGAAGCTGTTTGTTGGCTATTTCCTC
rJMFF022M14+ GGTTGGTGATTCTGCACTGCGGCCGATCCAAAATTGAAGCTGTTTGTTGGCTATTTCCTC
rJMSF005C13+ GGTTGGTGATTCTGCACTGCGGCCGATCCAAAATTGAAGCTGTTTGTTGGCTATTTCCTC
rJMFF019E03+ GGTTGGTGATTCTGCACTGCGGCCGATCCAAAATTGAAGCTGTTTGTTGGCTATTTCCTC
rJMSF007I23+ GGTTGGTGATTCTGCACTGCGGCCGATCCAAAATTGAAGCTGTTTGTTGGCTATTTCCTC
rJMSF030B17+ GGTTGGTGATTCTGCACTGCGGCCGATCCAAAATTGAAGCTGTTTGTTGGCTATTTCCTC
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consensus GGTTGGTGATTCTGCACTGCGGCCGATCCAAAATTGAAGCTGTTTGTTGGCTATTTCCTC

. : . : . : . : . : . :
rJMSF010E04+ CTCTATACCTAGGGCCTTGGCTCTTCTCCAAAAGTAAGTAAGCCATGCCTCCTTGAAAAG
rJMFF022M14+ CTCTATACCTAGGGCCTTGGCTCTTCTCCAAAAGTAAGTAAGCCATGCCTCCTTGAAAAG
rJMSF005C13+ CTCTATACCTAGGGCCTTGGCTCTTCTCCAAAAGTAAGTAAGCCATGCCTCCTTGAAAAG
rJMFF019E03+ CTCTATACCTAGGGCCTTGGCTCTTCTCCAAAAGTAAGTAAGCCATGCCTCCTTGAAAAG
rJMSF007I23+ CTCTATACCTAGGGCCTTGGCTCTTCTCCAAAAGTAAGTAAGCCATGCCTCCTTGAAAAG
rJMSF030B17+ CTCTATACCTAGGGCCTTGGCTCTTCTCCAAAAGTAAGTAAGCCATGCCTCCTTGAAAAG
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consensus CTCTATACCTAGGGCCTTGGCTCTTCTCCAAAAGTAAGTAAGCCATGCCTCCTTGAAAAG

. : . : . : . : . : . :
rJMSF010E04+ CACATCTTCAGACTCCTCAGGGCTCAGTTCAATTGCTTCCATATACTTTGGATCACCAGG
rJMFF022M14+ CACATCTTCAGACTCCTCAGGGCTCAGTTCAATTGCTTCCATATACTTTGGATCACCAGG
rJMSF005C13+ CACATCTTCAGACTCCTCAGGGCTCAGTTCAATTGCTTCCATATACTTTGGATCA
rJMFF019E03+ CACATCTCCAGACTCCTCAGGGCTCAGTTCAATTGCTTCCATATACTTTGGATCACCAGG
rJMSF007I23+ CACATCTTCAGACTCCTCAGGGCTCAGTTCAATTGCTTCCATATACTTTGGATCACCAGG
rJMSF030B17+ CACATCTTCAGACTCCTCAGGGCTCAGTTCAATTGCTTCCATATACTTTGGATCACCAGG
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consensus CACATCTTCAGACTCCTCAGGGCTCAGTTCAATTGCTTCCATATACTTTGGATCACCAGG

. : . : . : . : . : . :
rJMSF010E04+ TGACTTGAGATCTGAGATTGATGTTCGAGCAGTGTTTGGGCGCCGTTGTTGAGCCAGTGC
rJMFF022M14+ TGACTTGAGATCTGAGATTGATGTTCGAGCAGTGTTTGGGCGCCGTTGTTGAGCCAGTGC
rJMFF019E03+ TGACTTGAGATCTGAGATTGATGTTCGAGCAGTGTTTGGGCGCCGTTGTTGAGCCAGTGC
rJMSF007I23+ TGACTTGAGATCTGAGATTGATGTTCGAGCAGTGTTTGGGCGCCGTTGTTGAGCCAGTGC
rJMSF030B17+ TGACTTGAGATCTGAGATTGATGTTCGAGCAGTGTTTGGGCGCCGTTGTTGAGCCAGTGC
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consensus TGACTTGAGATCTGAGATTGATGTTCGAGCAGTGTTTGGGCGCCGTTGTTGAGCCAGTGC

. : . : . : . : . : . :
rJMSF010E04+ AAGGACAATTGCGTCTTCAACCTTGAGTGACGTAAGCTCTTTCAAGCCCATTTCTACTGA
rJMFF022M14+ AAGGACAATTGCGTCTTCAACCTTGAGTGACGTAAGCTCTTTCAAGCCCATTTCTACTGA
rJMFF019E03+ AAGGACAATTGCGTCTTCAACCTTGAGTGACGTAAGCTCTTTCAAGCCCATTTCTACTGA
rJMSF007I23+ AAGGACAATTGCGTCTTCAACCTTGAGTGACGTAAGCTCTTTCAAGCCCATTTCTACTGA
rJMSF030B17+ AAGGACAATTGCGTCTTCAACCTTGAGTGACGTAAGCTCTTTCAAGCCCATTTCTACTGA
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consensus AAGGACAATTGCGTCTTCAACCTTGAGTGACGTAAGCTCTTTCAAGCCCATTTCTACTGA

. : . : . : . : . : . :
rJMSF010E04+ AAGCATACTCTCNATGTTTCCTTCT
rJMFF022M14+ AAGCATACTCTCAATGTTTCCTTCTCCAGTCAGATCACTCAAGTCCAGAACATGTTTGAC
rJMFF019E03+ AAGCATACTCTCAATGTTTCCTTCTCCAGTCAGATCACTCAAGTCCAGAACATGTTTGAC
rJMSF007I23+ AAGCATACTCTCAATGTTTCCTTCTCCAGTCAGATCACTCAAGTCCAGAACATGTTTGAC
rJMSF030B17+ AAGCATACTCTCAATGTTTCCTTCTCCAGTCAGATCACTCAAGTCCAGAACATGTTTGAC
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consensus AAGCATACTCTCAATGTTTCCTTCTCCAGTCAGATCACTCAAGTCCAGAACATGTTTGAC

. : . : . : . : . : . :
rJMFF022M14+ CC-TTTCTGGATTTTCATCACCTTTTTGCCAGCATTCTTCCTTAGCTTTTT-GTCCAGCA
rJMFF019E03+ CCCTTTCTGGATTTTCATCACCTTTTTGCCAGCATTCTTCCTTA
rJMSF007I23+ CC-TTTCTGGATTTTCATCACCTTTTTGCCAGCATTCTTCCTTAGCTTTTTTGTCCAGCA
rJMSF030B17+ CC-TTTCTGGATTTTCATCACCTTTTTGCCAGCATTCTTCCTTAGCTTTTT-GTCCAGCA
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consensus CC-TTTCTGGATTTTCATCACCTTTTTGCCAGCATTCTTCCTTAGCTTTTT-GTCCAGCA

. : . : . : . : . : . :
rJMFF022M14+ GAGAGGACTATTTCAAAGGGAAGANGGG-CTAAAGATGACCAATATTCATATTTAGTGAT
rJMSF007I23+ GAGAGGACTATTTCAAAGGGAAGAGGGGNCTAAAGATGACCAATATTCATATTTAGTGAT
rJMSF030B17+ GAGAGGACTATTTCAAAGGGAAGANGGG-CTAAAGATGACCAATATTCATATTTAGTGAT
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consensus GAGAGGACTATTTCAAAGGGAAGAGGGG-CTAAAGATGACCAATATTCATATTTAGTGAT

. : . : . : . : . : . :
rJMFF022M14+ AGCAATATCCGAACAGATACCATACCGAGCAGCTAAACC
rJMSF007I23+ AGCAATATCCG
rJMSF030B17+ AGCAATATCCGAACAGATACCATACCGAGCAGCTAAACCCCANTAACGAGCAAGCCAACA
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consensus AGCAATATCCGAACAGATACCATACCGAGCAGCTAAACCCCANTAACGAGCAAGCCAACA

. : . : . : . : . : . :
rJMSF030B17+ TC
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consensus TC