Alignment Contig 9866

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF051I11+ CCCTGGAGAGTTTTTTTTTTTTTTTTATGTTGCAAGCTCAATATTTATTCCAATGAAGTT
rJMFF029P10+ TATTTATTCCAATGAAGTT
rJMFF004D21+ TATTTATTCCAATGAAGTT
rJMFF027E18+ ATGAAGTT
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consensus CCCTGGAGAGTTTTTTTTTTTTTTTTATGTTGCAAGCTCAATATTTATTCCAATGAAGTT

. : . : . : . : . : . :
rJMFF051I11+ TTATGTCTGGTCCAAACTTATAATTAAATGTTTAATAGAATTCCTAGGTAAACTACCTAA
rJMFF029P10+ TTATGTCTGGTCCAAACTTATAATTAAATGTTTAATAGAATTCCTAGGTAAACTACCTAA
rJMFF004D21+ TTATGTCTGGTCCAAACTTATAATTAAATGTTTAATAGAATTCCTAGGTAAACTACCTAA
rJMFF027E18+ TTATGTCTGGTCCAAACTTATAATTAAATGTTTAATAGAATTCCTAGGTAAACTACCTAA
rJMSF020N06+ ATGTTTAATAGAATTCCTAGGTAAACTACCTAA
rJMSF007H18+ GAATTCCTAGGTAANCTACCTAA
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consensus TTATGTCTGGTCCAAACTTATAATTAAATGTTTAATAGAATTCCTAGGTAAACTACCTAA

. : . : . : . : . : . :
rJMFF051I11+ ATTACGTCAAAATTCAATGCCACTCCTGG-TTTGGAGGGTTAACTAAATTCTACATGCCC
rJMFF029P10+ ATTACGTCAAAATTCAATGCCACTCCTGG-TTTGGAGGGTTAACTAAATTCTACATGCCC
rJMFF004D21+ ATTACGTCAAAATTCAATGCCACTCCTGG-TTTGGACGGTTAACTAAATTCTACATGCCC
rJMFF027E18+ ATTACGTCAAAATTCAATGCCACTCCTGG-TTTGGAGGGTTAACTAAATTCTACATGCCC
rJMSF020N06+ ATTACGTCAAAATTCAATGCCACTCCTGGATTTGGAGGGTTAACTAAATTCTACATGCCC
rJMSF007H18+ ATTACGTCAAAATTCAATGCCACTCCTGG-TTTGGAGGGTTAACTGAATTCTACATGCCC
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consensus ATTACGTCAAAATTCAATGCCACTCCTGG-TTTGGAGGGTTAACTAAATTCTACATGCCC

. : . : . : . : . : . :
rJMFF051I11+ AAATAATGAATCAAATAGATGGCCAGAAATGCCATCTCAACTGTAAGTAGTCTTCCTGGG
rJMFF029P10+ AAATAATGAATCAAATAGATGGCCAGAAATGCCATCTCAACTGTAAGTAGTCTTCCTGGG
rJMFF004D21+ AAATAATGAATCAAATAGATGGCCAGAAATGCCATCTCAACTGTAAGTAGTCTTCCTGGG
rJMFF027E18+ AAATAATGAATCAAATAGATGGCCAGAAATGCCATCTCAACTGTAAGTAGTCTTCCTGGG
rJMSF020N06+ AAATAATGAATCAANTAGATGGCCAGAAATGCCATCTCAACTGTAAGTAGTCTTCCTGGG
rJMSF007H18+ AAATAATGAATCNAANANATGGCCGGANATGCCATCTCAACTGTAAGTAGTCTTCCTGGG
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consensus AAATAATGAATCAAATAGATGGCCAGAAATGCCATCTCAACTGTAAGTAGTCTTCCTGGG

. : . : . : . : . : . :
rJMFF051I11+ CAGACATTCAGCTTACTTGCTGCTGGTGGGTTCCGTACATTGGATAAGCCCCGTAGGCTG
rJMFF029P10+ CAGACATTCAGCTTACTTGCTGCTGGTGGGTTCCGTACATTGGATAAGCCCCGTAGGCTG
rJMFF004D21+ CAGACATTCAGCTTACTTGCTGCTGGTGGGTTCCGTACATTGGATAAGCCCCGTAGGCTG
rJMFF027E18+ CAGACATTCAGCTTACTTGCTGCTGGTGGGTTCCGTACATTGGATAAGCCCCGTAGGCTG
rJMSF020N06+ CAGACATTCAGCTTACTTGCTGCTGGTGGGTTCCGTACATTGGATAAGCCCCGTAGGCTG
rJMSF007H18+ CAGACNTTCANCTTACTTGCTGCTGGTGGGTTCCGTACNTTGGATAAGCCCCGTAGGCTG
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consensus CAGACATTCAGCTTACTTGCTGCTGGTGGGTTCCGTACATTGGATAAGCCCCGTAGGCTG

. : . : . : . : . : . :
rJMFF051I11+ CTGGGGCATACATGTTCGGGTTATGGGGGGCCGGGAAAGCATAAGTGTAGCCATCATAGA
rJMFF029P10+ CTGGGGCATACATGTTCGGGTTATGGGGGGCCGGGAAAGCATAAGTGTAGCCATCATAGA
rJMFF004D21+ CTGGGGCATACATGTTCGGGTTATGGGGGGCCGGGAAAGCATAAGTGTAGCCATCATAGA
rJMFF027E18+ CTGGGGCATACATGTTCGGGTTATGGGGGGCCGGGAAAGCATAAGTGTAGCCATCATAGA
rJMSF020N06+ CTGGGGCATACATGTTCGGNTTATGGGGGGCCGGGAAAGCATAAGTGTAGCCATCATAGA
rJMSF007H18+ CTGGGGCATACATGTTCGGGTTATGGGGGGCCGGGAAAGCNTAAGTGTANCCATCATAGA
rJMCP002F12- GGAAAGCATAACCATAGCCAttgTAGA
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consensus CTGGGGCATACATGTTCGGGTTATGGGGGGCCGGGAAAGCATAAGTGTAGCCATCATAGA

. : . : . : . : . : . :
rJMFF051I11+ AGTGTCCTCCATAGTACGCCCCTGCCCACTGGTTCGTGAAATCAGATCTCGACTGTCTAT
rJMFF029P10+ AGTGTCCTCCATAGTACGCCCCTGCCCACTGGTTCGTGAAATCAGATCTCGACTGTCTAT
rJMFF004D21+ AGTGTCCTCCATAGTACGCCCCTGCCCACTGGTTCGTGAAATCAGATCTCGACTGTCTAT
rJMFF027E18+ AGTGTCCTCCATAGTACGCCCCTGCCCACTGGTTCGTGAAATCAGATCTCGACTGTCTAT
rJMSF020N06+ AGTGTCCTCCATAGTACGCCCCTGCCCACTGGTTCGNGAAATCACATCTCGACTGNCTAT
rJMSF007H18+ AGTGTCCTCCATAGTACGCCCCTGCCCACTGGTTCGTGAAATCAGATCTCGACTGTCTAT
rJMCP002F12- AGTGTCCTCCATAGTATGCCCCTGTCCACTGGTTCATGAACTCACCTCTTGTCTCTTTAT
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consensus AGTGTCCTCCATAGTACGCCCCTGCCCACTGGTTCGTGAAATCAGATCTCGACTGTCTAT

. : . : . : . : . : . :
rJMFF051I11+ GTGCTGGATTTCGTCCCCAAGAAAGGCGAACGGTCTGTTTTCCAATTACAAGACCTTTCA
rJMFF029P10+ GTGCTGGATTTCGTCCCCAAGAAAGGCGAACGGTCTGTTTTCCAATTACAAGACCTTTCA
rJMFF004D21+ GTGCTGGATTTCGTCCCCAAGAAAGGCGAACGGTCTGTTTTCCAATTACAAGACCTTTCA
rJMFF027E18+ GTGCTGGATTTCGTCCCCAAGAAAGGCGAACGGTCTGTTTTCCAATTACAAGACCTTTCA
rJMSF020N06+ GTGCTGGATTTCNTCCCCAA
rJMSF007H18+ GTGCTGGATTTCGTCCCCAAGAAAGGCGAACGGTCTGTTTTCCAATTACAAGACCTTTCA
rJMCP002F12- TAGCCGGATTTCGTCCCCAAGAAAGGCGAACTGTCTGTTTCCCGATCACAAGACCTTTCA
JMFS020A05- ACAAGACCTTTCA
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consensus GTGCTGGATTTCGTCCCCAAGAAAGGCGAACGGTCTGTTTTCCAATTACAAGACCTTTCA

. : . : . : . : . : . :
rJMFF051I11+ ACTTCTGTAATGCTTCCTCAGCATCAGTTCTGTTAGCAAATTGCACGAATCCACATCCTT
rJMFF029P10+ ACTTCTGTAATGCTTCCTCAGCATCAGTTCTGTTAGCAAATTGCACGAATCCACATCCTT
rJMFF004D21+ ACTTCTGTAATGCTTCCTCAGCATCAGTTCTGTTAGCAAATTGCACGAATCCACATCCTT
rJMFF027E18+ ACTTCTGTAATGCTTCCTCAGCATCAGTTCTGTTAGCAAATTGCACGAATCCACATCCTT
rJMSF007H18+ ACTTCTGTAATGCTTCCTCA
rJMCP002F12- ACTTCTGCAGTGCTTCCtctGCGTCATTTCTCTTAGCAAATTGCACAAATCCACATCCTT
JMFS020A05- ACTTCTGCAGTGCTTCCTCTGCGTCATTTCTCTTAGCAAATTGCACAAATCCACATCCTT
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consensus ACTTCTGTAATGCTTCCTCAGCATCAGTTCTGTTAGCAAATTGCACGAATCCACATCCTT

. : . : . : . : . : . :
rJMFF051I11+ TTCCAACTGGAATTTTTNACGGAACTATTTCACCATACTGTGAGAAAGGCTGTCTAAGAT
rJMFF029P10+ TTCCAACTGGAATTTTTACGGAAACTATTTCACCATACTGTGAGAAAGGCTGTCTAAGAT
rJMFF004D21+ TTCCAACTGGAATTTTTACGGAAACTATTTCACCATACTGTGAGAAAGGCTGTCTAAGAT
rJMFF027E18+ TTCCAACTGGAATTTTTACGGAAACTATTTCACCATACTGTGAGAAAGGCTGTCTAAGAT
rJMCP002F12- TCCCAACAGGAATTTTAACAGAAACTACTTCACCATATTGTAAGAAAGGCTGCCTAAGGT
JMFS020A05- TCCCAACAGGAATTTTAACAGAAACTACTTCACCATATTGTAAGAAAGGCTGCCTAAGGT
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consensus TTCCAACTGGAATTTTTACGGAAACTATTTCACCATACTGTGAGAAAGGCTGTCTAAGAT

. : . : . : . : . : . :
rJMFF051I11+ CTTCATCACTAACATTT
rJMFF029P10+ CTTCATCACTAACATTTGGGTCAAGACCTCCAACAAAAATCGNTGTATTAGAAGAATCCC
rJMFF004D21+ CTTCATCACTAACATTTGGGTCAAGACCTCCAACAAAAATCGTTGTATTAGAAGAATCCC
rJMFF027E18+ CTTCATCACTAACATTTGGGTCAAGACCTCCAACAAAAATCGTTGTATTAGAAGAATCCC
rJMCP002F12- CTTCGTCACTAACATTTGGGTCGAGACCTCCAACAAAAATCGTGGTATTAGAAGAATCGC
JMFS020A05- CTTCGTCACTAACATTTGGGTCGAGACCTCCAACAAAAATCGTGGTATTAGAAGAATCGC
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consensus CTTCATCACTAACATTTGGGTCAAGACCTCCAACAAAAATCGTTGTATTAGAAGAATCCC

. : . : . : . : . : . :
rJMFF029P10+ CATCANATTGTGACCCATGGGCTGGA
rJMFF004D21+ CATCAGATTGTGACCCATGGGCTGGAGAACCATTTGAATATCCACCTTGTGCAGGAAGTT
rJMFF027E18+ CATCAGATTGTGACCCATGGGCTGGAGAACCATTTGAATATCCACCTTGTGCAGGAAGTT
rJMCP002F12- CATCAGATTGTGACCCTTGTGCTGGAGAACCATTTGAATATCCACCTTGTGCAGCAAATT
JMFS020A05- CATCAGATTGTGACCCTTGTGCTGGAGAACCATTTGAATATCCACCTTGTGCAGCAAATT
____________________________________________________________
consensus CATCAGATTGTGACCCATGGGCTGGAGAACCATTTGAATATCCACCTTGTGCAGCAAATT

. : . : . : . : . : . :
rJMFF004D21+ GCTGTTGAT
rJMFF027E18+ GCTGTTGAT
rJMCP002F12- GCTGTTGATATCCCGATGATTTCCTGGGAGTGGCTGCACCAATTCGCATAGGCCGGCTTG
JMFS020A05- GCTGTTGATATCCCGATGATTTCCTGGGAGTGGCTGCACCAATTCGCATAGGCCGGCTTG
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consensus GCTGTTGATATCCCGATGATTTCCTGGGAGTGGCTGCACCAATTCGCATAGGCCGGCTTG

. : . : . : . : . : . :
rJMCP002F12- AACAATAAACGCCATTCATTTCAGTCAAGGCCTGAGACCTCTCATTATCATCGCCAAACC
JMFS020A05- AACAATAAACGCCATTCATTTCAGTCAAGGCCTGAGACCTCTCATTATCATCGCCAAACC
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consensus AACAATAAACGCCATTCATTTCAGTCAAGGCCTGAGACCTCTCATTATCATCGCCAAACC

. : . : . : . : . : . :
rJMCP002F12- TCACAAAGCCATAACCTTTGGAGCGTCCAGTGTTAGCATCAATGA
JMFS020A05- TCACAAAGCCATAACCTTTGGAGCGTCCAGTGTTAGCATCAATGACCACTTTAGCAGCTT
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consensus TCACAAAGCCATAACCTTTGGAGCGTCCAGTGTTAGCATCAATGACCACTTTAGCAGCTT

. : . : . : . : . : . :
JMFS020A05- TAACAGAGGGATATTTACTAACAAATGTATCAAGCAATAAGGTGTCAGTAACATCTGCAG
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consensus TAACAGAGGGATATTTACTAACAAATGTATCAAGCAATAAGGTGTCAGTAACATCTGCAG

. : . : . : . : . : . :
JMFS020A05- CTAAATCTCCTACAAAGATAGAAAGATCAGAAGCATTATTCGAACGCTTTTCCCCCATGC
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consensus CTAAATCTCCTACAAAGATAGAAAGATCAGAAGCATTATTCGAACGCTTTTCCCCCATGC

. : . : . : . : . : . :
JMFS020A05- TAAAAGTAGACCAATTCGCATAGGCCGGCTTGAACAATAAACGCCATTCATTTCAGTCAA
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consensus TAAAAGTAGACCAATTCGCATAGGCCGGCTTGAACAATAAACGCCATTCATTTCAGTCAA

. : . : . : . : . : . :
JMFS020A05- GGCCT
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consensus GGCCT