Alignment Contig 9842

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF049C06+ AACTCAAGAGTGATGTTTTATTGAATGCAAAATTTGAATTCTCCAATTAGGTTCGACCCA
rJMFF010E06+ GTTTTATTGAATGCAAAATTTGAATTCTCCAATTAGGTTCGACCCA
rJMFF011L02+ AATTTGAATTCTCCAATTAGGTTCGACCCA
rJMSF028F08+ ATTAGGTTCGACCCA
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consensus AACTCAAGAGTGATGTTTTATTGAATGCAAAATTTGAATTCTCCAATTAGGTTCGACCCA

. : . : . : . : . : . :
rJMFF049C06+ GAAACAGAATAAAGTAGTGCCTAGCCAAATTTACATGTTTGACTAGTAAATATACAGAAG
rJMFF010E06+ GAAACAGAATAAAGTAGTGCCTAGCCAAATTTACATGTTTGACTAGTAAATATACAGAAG
rJMFF011L02+ GAAACAGAATAAAGTAGTGCTTAGCCAAATTTACATGTTTGACTAGTAAATATACAGAAG
rJMSF028F08+ GAAACAGAATAAAGTAGTGCTTAGCCAAATTTACATGTTTGACTAGTAAATATACAGAAG
rJMSF052H14+ TTTGACTAGTAAATATACAGAAG
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consensus GAAACAGAATAAAGTAGTGCCTAGCCAAATTTACATGTTTGACTAGTAAATATACAGAAG

. : . : . : . : . : . :
rJMFF049C06+ GCATTGAAAGGAAGAAGCAAAACAAAATCAAATCCAAGTGGTGCAGCCTATGTTCTAGTA
rJMFF010E06+ GCATTGAAAGGAAGAAGCAAAACAAAATCAAATCCAAGTGGTGCAGCCTATGTTCTAGTA
rJMFF011L02+ GCATTGAAAGGAAGAAGCAAAACAAAATCAAATCCAAGTGGTGCAGCCTATGTTCTAGTA
rJMSF028F08+ GCATTGAAAGGAAGAAGCAAAACAAAATCAAATCCAAGTGGTGCAGCCTATGTTCTAGTA
rJMSF052H14+ GCATTGANAGGAAGAAGCANAACANAATCNAATCCANGTGGTGCNGCCNATGTTCTAGNA
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consensus GCATTGAAAGGAAGAAGCAAAACAAAATCAAATCCAAGTGGTGCAGCCTATGTTCTAGTA

. : . : . : . : . : . :
rJMFF049C06+ GGTCATTTTCTGTGAGTATTGCTACAACTTACCGCTCTCTCACTATGGGTGGTATTAGGC
rJMFF010E06+ GGTCATTTTCTGTGAGTATTGCTACAACTTACCGCTCTCTCACTATGGGTGGTATTAGGC
rJMFF011L02+ GGTCATTTTCTGTGAGTATTGCTACAACTTACCGCTCTCTCACTATGGGTGGTATTAGGC
rJMSF028F08+ GGTCATTTTCTGTGAGTATTGCTACAACTTACCGCTCTCTCACTATGGGTGGTATTAGGC
rJMSF052H14+ NGTCATTTTCTGTGAGTATTGCTACAACTTACCGCTCTCTCACTATGGGTGGTATTAGGC
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consensus GGTCATTTTCTGTGAGTATTGCTACAACTTACCGCTCTCTCACTATGGGTGGTATTAGGC

. : . : . : . : . : . :
rJMFF049C06+ AGGCTGTTAGCCATAGGGCAGTTTAGGAAATTTTGCCTATTTTTGCAGTGTTGAAGTTGC
rJMFF010E06+ AGGCTGTTAGCCATAGGGCAGTTTAGGAAATTTTGCCTATTTTTGCAGTGTTGAAGTTGC
rJMFF011L02+ AGGCTGTTAGCCATAGGGCAGTTTAGGAAATTTTGCCTATTTTTGCAGTGTTGAAGTTGC
rJMSF028F08+ AGGCTGTTAGCCATAGGGCAGTTTAGGAAATTTTGCCTATTTTTGCAGTGTTGAAGTTGC
rJMSF050G20+ TATTTTTGCAGNGTTNAANTTGC
rJMSF052H14+ AGGCTGTTAGCCATAGGGCAGNTTANGAAATTTTGCCTATTTTTGCNGTGNTGAAGTTGC
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consensus AGGCTGTTAGCCATAGGGCAGTTTAGGAAATTTTGCCTATTTTTGCAGTGTTGAAGTTGC

. : . : . : . : . : . :
rJMFF049C06+ TGTGTCTGTGTAGGGATGTAAGCAAAGCAACACGTGGATTTCACCAAGGGGGGTGATCTT
rJMFF010E06+ TGTGTCTGTGTAGGGATGTAAGCAAAGCAACACGTGGATTTCACCAAGGGGGGTGATCTT
rJMFF011L02+ TGTGTCTGTGTAGGGATGTAAGCAAAGCAACACGTGGATTTCACCAAGGGGGGTGATCTT
rJMSF028F08+ TGTGTCTGTGTAGGGATGTAAGCAAAGCAACACGTGGATTTCACCAAGGGGGGTGATCTT
rJMSF050G20+ TGTGTCTGTGTAAGGATGTAAGCAAAGCAACACNTGGATTTCACCNAGGGGGGCGATCTT
rJMSF052H14+ TGTGNCTGTGNAGGGATGTAAGCAAAGCANCACGNGGATTTCACCNAGGGGGGTGATCTT
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consensus TGTGTCTGTGTAGGGATGTAAGCAAAGCAACACGTGGATTTCACCAAGGGGGGTGATCTT

. : . : . : . : . : . :
rJMFF049C06+ CTTGTGGAGTCTGGGGCGGTATTGGTTTCCAATTAGGTTTCTCATCCCAATACATGTCGT
rJMFF010E06+ CTTGTGGAGTCTGGGGCGGTATTGGTTTCCAATTAGGTTTCTCATCCCAATACATGTCGT
rJMFF011L02+ CTTGTGGAGTCTGGGGCGGTATTGGTTTCCAATTAGGTTTCTCATCCCAATACATGTCGT
rJMSF028F08+ CTTGTGGAGTCTGGGGCGGTATTGGTTTCCAATTAGGTTTCTCATCCCAATACATGTCGT
rJMSF050G20+ CTTGTGGAGTCTGGNGCGGTATTGGTTTCCAATTAGGTTTCTCATCCCAATACATGTCGT
rJMSF052H14+ CTTGTGGAGNCTGGGGCGGTATTGGNTTCCAATTAGGNTNCTCATCCCANTACATGTCGT
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consensus CTTGTGGAGTCTGGGGCGGTATTGGTTTCCAATTAGGTTTCTCATCCCAATACATGTCGT

. : . : . : . : . : . :
rJMFF049C06+ AGTATACGTGACCTGGTGTTTGATTTTCCACACAACACCATATACCCACATACCGCTTGA
rJMFF010E06+ AGTATACGTGACCTGGTGTTTGATTTTCCACACAACACCATATACCCACATACCGCTTGA
rJMFF011L02+ AGTATACGTGACCTGGTGTTTGATTTTCCACACAACACCATATACCCACATACCGCTTGA
rJMSF028F08+ AGTATACGTGACCTGGTGTTTGATTTTCCACACAACACCATATACCCACATACCGCTTGA
rJMSF050G20+ AGTATACGTGACCTGGTGTTTGATTTNCCACACAACACCATATACCCACATACCGCTNGA
rJMSF052H14+ ANTATACGTGACCTGGTGTTTGATTTTCCACACAACACCATATACCCACATACCGNTTGA
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consensus AGTATACGTGACCTGGTGTTTGATTTTCCACACAACACCATATACCCACATACCGCTTGA

. : . : . : . : . : . :
rJMFF049C06+ CTCGGTTCCTGAATCTGTGTTCCCTGGCCTTGTCAGTAAAACCTTGGAAGGCATCATGCA
rJMFF010E06+ CTCGGTTCCTGAATCTGTGTTCCCTGGCCTTGTCAGTAAAACCTTGGAAGGCATCATGCA
rJMFF011L02+ CTCGGTTCCTGAATCTGTGTTCCCTGGCCTTGTCAGTAAAACCTTGGAAGGCATCATGCA
rJMSF028F08+ CTCGGTTCCTGAATCTGTGTTCCCTGGCCTTGTCAGTAAAACCTTGGAAGGCATCATGCA
rJMSF050G20+ CTCGGTTCCNGANTCTGTGTTCCCTGGCCNTGTCNGTANAACCTTGNAAGGCAT---GCN
rJMSF052H14+ CTCGGTTCCTGAATCNGTGTTCCCTGGCCTTGTCAGTAANACCTTGGAAGGCATCATGCN
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consensus CTCGGTTCCTGAATCTGTGTTCCCTGGCCTTGTCAGTAAAACCTTGGAAGGCATCATGCA

. : . : . : . : . : . :
rJMFF049C06+ TTGATGAGAACTGAATTACTTTGACATCCTTGAACAAGGAGAATACTGTCTTGAACTTTT
rJMFF010E06+ TTGATGAGAACTGAATTACTTTGACATCCTTGAACAAGGAGAATACTGTCTTGAACTTTT
rJMFF011L02+ TTGATGAGAACTGAATTACTTTGACATCCTTGAACAAGGAGAATACTGTCTTGAACTTTT
rJMSF028F08+ TTGATGAGAACTGAATTACTTTGACATCCTTGAACAAGGAGAATACTGTCTTGAACTTTT
rJMSF050G20+ TTGATGAGAACTGAATTACTTTGACATCCTTGAACANGGAGAATACTGNCTTGAACTTTT
rJMSF052H14+ TTGATGACAACTGAATTACTTTGACNTCCTTGAACAAGGAGAATACTGTCTTGAACTTTT
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consensus TTGATGAGAACTGAATTACTTTGACATCCTTGAACAAGGAGAATACTGTCTTGAACTTTT

. : . : . : . : . : . :
rJMFF049C06+ CTTCA
rJMFF010E06+ CTTCAGTACTATTCTTGGGGAATCTAAGAATTCCTGTTGCAGTAGTACTGTTGGAAAGTT
rJMFF011L02+ CTTCAGTACTATTCTTGGGGAATCTAAGAATTCCTGTTGCAGTAGTACTGNTGGAAAGTT
rJMSF028F08+ CTTCAGTACTATTCTTGGGGAATCTAAGAATTCCTGTTGCAGTAGTACTGTTGGAAAGTT
rJMSF050G20+ CTTCAGTACTATTCTTG
rJMSF052H14+ CTTCANTACTATTCTTGGGGAATCTAANANTTCCTGTTGCAGTANTACTGTNGNAAAGTT
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consensus CTTCAGTACTATTCTTGGGGAATCTAAGAATTCCTGTTGCAGTAGTACTGTTGGAAAGTT

. : . : . : . : . : . :
rJMFF010E06+ GGCAGCCTTCTGATCCCTCTCGGCATAGTTGCACATCAAGCCATGACTCTTTCACCTCTT
rJMFF011L02+ GGCAGCCTTCTGATCCCTCTCGGCATAGTTGCACATCAAGCCATGACTCTTTCAC
rJMSF028F08+ GGCAGCCTTCTGATCCCTCTCGGCATAGTTGCACATCAAGCCATGACTCTTTCACCTCTT
rJMSF052H14+ GGCAGCCTTCTGATCCCTCTCGGNATAGTTGCACATCAAGCCATGACTCTTTCACCTCTT
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consensus GGCAGCCTTCTGATCCCTCTCGGCATAGTTGCACATCAAGCCATGACTCTTTCACCTCTT

. : . : . : . : . : . :
rJMFF010E06+ GGGGCATTAATGGATTGTCAAAT
rJMSF028F08+ GGGGCATTAATGGATTGTCAAATAAAGAATACTCCCTAAAACTGATCCCAGGTCCAA-TT
rJMSF052H14+ GGGGCATTNATGGATTGTCAAATAAAGAATACTCCCTAANACTGATCCCANGTCCAAATT
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consensus GGGGCATTAATGGATTGTCAAATAAAGAATACTCCCTAAAACTGATCCCAGGTCCAAATT

. : . : . : . : . : . :
rJMSF028F08+ CCTCCTCTGGTTGTTCCCTCGACATCACATTAA
rJMSF052H14+ CCTCCNCTGGTTGTTCCCTCGACATCNCATTAACCTCAAACNCATGATCCNAA
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consensus CCTCCTCTGGTTGTTCCCTCGACATCACATTAACCTCAAACNCATGATCCNAA