Alignment Contig 9816

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF046K12+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGGTAGCTAAACTGAGCTAA
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consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTGGTAGCTAAACTGAGCTAA

. : . : . : . : . : . :
rJMFF046K12+ TTCATAAAATGTAAAGGTTCTTACAAATCAATAGAATCCAGTAAGGCAGAAATCAAGAAA
rJMFF002F08+ AAGGTTCTTACAAATCAATAGAATCCAGTAAGGCAGAAATCAAGAAA
rJMFF015K07+ AAGGTTCTTACAAATCAATAGAATCCAGTAAGGCAGAAATCAAGAAA
rJMSF051J12+ AAGGTTCTTACAAATCAATAGAATCCAGTAAGGCAGAAATCAAGAAA
rJMFF013L14+ CTTACAAATCAATAGAATCCGGTAAGGCAGAAATCAAGAAA
rJMSF021M10+ AATCAATAGAATCCAGTAAGGCAGAAATCAAGAAA
rJMFF013C21+ TAGAATCCNGTAAGGCAGAAATCAAGAAA
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consensus TTCATAAAATGTAAAGGTTCTTACAAATCAATAGAATCCAGTAAGGCAGAAATCAAGAAA

. : . : . : . : . : . :
rJMFF046K12+ TGGAAGAGTAAGTTCCATAAAGATTTTATACAAAATACAGAAGTTTT--GAGAAATAGGA
rJMFF002F08+ TGGAAGAGTAAGTTCCATAAAGATTTTATACAAAATACAGAAGTTTT--GAGAAATAGGA
rJMFF015K07+ TGGAAGAGTAAGTTCCATAAAGATTTTATACAAAATACAGAAGTTTT--GAGAAATAGGA
rJMSF051J12+ TGGAAGAGTAAGTTCCATAAAGATTTTATACAAAATACAGAAGTTTT--GAGAAATAGGA
rJMFF013L14+ TGGAAGAGTAAGTTCCATAAAGATTTTATACAAAATACAGAAGTTTT--GAGAAATAGGA
rJMSF021M10+ TGGAAGAGTAAGTTCCATAAAGATTTTATACAAAATACAGAAGTTTT--GAGAAATAGGA
JMFN007F08- GAAATAGGA
rJMFF013C21+ TGGAAGAGTAAGTTCCATAAAGATTTTATACAAAATACAGAAGTTTTGGGAGAAATAGGA
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consensus TGGAAGAGTAAGTTCCATAAAGATTTTATACAAAATACAGAAGTTTT--GAGAAATAGGA

. : . : . : . : . : . :
rJMFF046K12+ AAAAGCACAATGCATCAAACCCTTGATGAAGAAATCAATCTCAGTTGTTGTTTCCATCAA
rJMFF002F08+ AAAAGCACAATGCATCAAACCCTTGATGAAGAAATCAATCTCAGTTGTTGTTTCCATCAA
rJMFF015K07+ AAAAGCACAATGCATCAAACCCTTGATGAAGAAATCAATCTCAGTTGTTGTTTCCATCAA
rJMSF051J12+ AAAAGCACAATGCATCAAACCCTTGATGAAGAAATCAATCTCAGTTGTTGTTTCCATCAA
rJMFF013L14+ AAAAGCACAATGCATCAAACCCTTGATGAAGAAATCAATCTCAGTTGTTGTTTCCATCAA
rJMSF021M10+ AAAAGCACAATGCATCAAACCCTTGATGAAGAAATCAATCTCAGTTGTTGTTTCCATCAA
JMFN007F08- AAAAGCACAATGCATCAAACCCTTGATGAAGAAATCAATCTCAGTTGTTGTTTCCATCAA
rJMSF010C23+ TTGTTGTTTCCATCAA
rJMFF013C21+ AAAAGCACAATGCATCAAACCCTTGATGAAGAAATCAATCTCAGTTGTTGTTTCCATCAA
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consensus AAAAGCACAATGCATCAAACCCTTGATGAAGAAATCAATCTCAGTTGTTGTTTCCATCAA

. : . : . : . : . : . :
rJMFF046K12+ ATAAGGCCTCACAATTAGAGACCCCCCTTTGAGCTTCCTCTCATTCATTCATTCATTCTT
rJMFF002F08+ ATAAGGCCTCACAATTAGAGACCCCCCTTTGAGCTTCCTCTCATTCATTCATTCATTCTT
rJMFF015K07+ ATAAGGCCTCACAATTAGAGACCCCCCTTTGAGCTTCCTCTCATTCATTCATTCATTCTT
rJMSF051J12+ ATAAGGCCTCACAATTAGAGACCCCCCTTTGAGCTTCCTCTCATTCATTCATTCATTCTT
rJMFF013L14+ ATAAGGCCTCACAATTANAGACCCCCCTTTGAGCTTCCTCTCATTCATTCATTCATTCTT
rJMSF021M10+ ATAAGGCCTCACAATTAGAGACCCCCCTTTGAGCTTCCTCTCATTCATTCATTCATTCTT
JMFN007F08- ATAAGGCCTCACAATTAGAGACCCCCCTTTGAGCTTCCTCTCATTCATTCATTCATTCTT
rJMSF010C23+ ATAAGGCCTCACAATTAGAGACCCCCCTTTGAGCTTCCTCTCATTCATTCNTTCATTCTT
rJMFF013C21+ ATAAGGCCTCACAATTAGAGACCCCCCTTTGAGCTTCCTCTCATTCATTCATTCATTTTT
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consensus ATAAGGCCTCACAATTAGAGACCCCCCTTTGAGCTTCCTCTCATTCATTCATTCATTCTT

. : . : . : . : . : . :
rJMFF046K12+ GGCCATTTCTGCTTGTCTTGCACCAACAGCGAAGAATTCCGTGATCACCTCGAGGGGCAT
rJMFF002F08+ GGCCATTTCTGCTTGTCTTGCACCAACAGCGAAGAATTCCGTGATCACCTCGAGGGGCAT
rJMFF015K07+ GGCCATTTCTGCTTGTCTTGCACCAACAGCGAAGAATTCCGTGATCACCTCGAGGGGCAT
rJMSF051J12+ GGCCATTTCTGCTTGTCTTGCACCAACAGCGAAGAATTCCGTGATCACCTCGAGGGGCAT
rJMFF013L14+ GGCCATTTCTGCTTGTCTTGCACCAACAGCGAANAATTCCGTGATCACCTCGAGGGGCAT
rJMSF021M10+ GGCCATTTCTGCTTGTCTTGCACCAACAGCGAAGAATTCCGTGATCACCTCGAGGGGCAT
JMFN007F08- GGCCATTTCTGCTTGTCTTGCACCAACAGCGAAGAATTCCGTGATCACCTCGAGGGGCAT
rJMSF010C23+ GGCCATTTCTGCTTGTCTTGCACCAACAGCGAAGAATTCCGTGATCACCTCGAGGGGCAT
rJMFF013C21+ GGCCATTTCTGCTTGTCTTGCACCAACAGCGAAGAATTCCGTGATCACCTCGAGGGGCAT
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consensus GGCCATTTCTGCTTGTCTTGCACCAACAGCGAAGAATTCCGTGATCACCTCGAGGGGCAT

. : . : . : . : . : . :
rJMFF046K12+ GCCTTTCGTCTCGGGAACCCGAAGGAACACGAAGATCCACGAGATCACGCACACCACCGC
rJMFF002F08+ GCCTTTCGTCTCGGGAACCCGAAGGAACACGAAGATCCACGAGATCACGCACACCACCGC
rJMFF015K07+ GCCTTTCGTCTCGGGAACCCGAAGGAACACGAAGATCCACGAGATCACGCACACCACCGC
rJMSF051J12+ GCCTTTCGTCTCGGGAACCCGAAGGAACACGAAGATCCACGAGATCACGCACACCACCGC
rJMFF013L14+ GCCTTTCGTCTCGGGAACCCGAAGGAACACGAAGATCCACGAGATCACGCACACCACCGC
rJMSF021M10+ GCCTTTCGTCTCGGGAACCCGAAGGAACACGAAGATCCACGAGATCACGCACACCACCGC
JMFN007F08- GCCTTTCGTCTCGGGAACCCGAAGGAACACGAAGATCCACGAGATCACGCACACCACCGC
rJMSF010C23+ GCCTTTCGTCTCGGGAACCCGAAGGAACACGAAGATCCACGAGATCACGCACACCACCGC
rJMFF013C21+ GCCTTTCGTCTCGGGAACCCGAAGGAACACGAAGATCCACGAGATCACGCACACCACCGC
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consensus GCCTTTCGTCTCGGGAACCCGAAGGAACACGAAGATCCACGAGATCACGCACACCACCGC

. : . : . : . : . : . :
rJMFF046K12+ GTAGATCCCGAACACCCCAGCCAGCCCCATGGAACTCAGCATCACGGGCAACGAATAGGT
rJMFF002F08+ GTAGATCCCGAACACCCCAGCCAGCCCCATGGAACTCAGCATCACGGGCAACGAATAGGT
rJMFF015K07+ GTAGATCCCGAACACCCCAGCCAGCCCCATGGAACTCAGCATCACGGGCAACGAATAGGT
rJMSF051J12+ GTAGATCCCGAACACCCCAGCCAGCCCCATGGAACTCAGCATCACGGGCAACGAATAGGT
rJMFF013L14+ GTAGATCCCGAACACCCCAGCCAGCCCCATGGAACTCAGCATCACGGGCAACGAATAGGT
rJMSF021M10+ GTAGATCCCGAACACCCCAGCCAGCCCCATGGAACTCAGCATCACGGGCAACGAATAGGT
JMFN007F08- GTAGATCCCGAACACCCCAGCCAGCCCCATGGAACTCAGCATCACGGGCAACGAATAGGT
rJMSF010C23+ GTANATCCCGAACACCCCAGCCAGCCCCATGGAACTCACCATCACGGGCAACGAATAGGT
rJMFF013C21+ GTAGATCCCGAACACCCCAGCCAGCCCCATGGAACTCAGCATCACGGGCAACGAATAGGT
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consensus GTAGATCCCGAACACCCCAGCCAGCCCCATGGAACTCAGCATCACGGGCAACGAATAGGT

. : . : . : . : . : . :
rJMFF046K12+ AACGATGACGTCGCATATCCAGAANACTAGCGCGCATATGGCGATGCACTGGCCACGAAC
rJMFF002F08+ AACGATGACGTCGCATATCCAGAAAACTAGCGCGCATATGGCGATGCACTGGCCACGAAC
rJMFF015K07+ AACGATGACGTCGCATATCCAGAAAACTAGCGCGCATATGGCGATGCACTGGCCACGAAC
rJMSF051J12+ AACGATGACGTCGCATATCCAGAAAACTAGCGCGCATATGGCGATGCACTGGCCACGAAC
rJMFF013L14+ AACGATGACGTCGCATATCCAGAAAACTAGCGCGCATATGGCGATGCACTGGCCACGAAC
rJMSF021M10+ AACGATGACGTCGCATATCCAGAAAACTAGCGCGCATATGGCGATGCACTGGCCACGAAC
JMFN007F08- AACGATGACGTCGCATATCCAGAAAACTAGCGCGCATATGGCGATGCACTGGCCACGAAC
rJMSF010C23+ AACGATGACGTCGCATATCCAGAANACTANCGCGCATATGGCGATGCACTGGCCACGAAC
rJMFF013C21+ AACGATGACGTCGCATATCCAGAAAACTAGCGCGCATATGGCGATGCACTGGCCACGAAC
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consensus AACGATGACGTCGCATATCCAGAAAACTAGCGCGCATATGGCGATGCACTGGCCACGAAC

. : . : . : . : . : . :
rJMFF046K12+ CCTCGTGGGGA
rJMFF002F08+ CCTCGTGGGGAAGATCTCCGCGCAGAGGATGTTCGGGATCGGCCCGTAGCCCATCACGAA
rJMFF015K07+ CCTCGTGGGGAAGATCTCCGCGCAGAGGATGTTCGGGATCGGC
rJMSF051J12+ CCTCGTGGGGAAGATCTCCGCGCAGAGGATGTTCGGGATCGGCCCGTAGCCCATCACGAA
rJMFF013L14+ CCTCGTGGGGAAGATCTCCGCGCAGAGGATGTTCGGGATCGGCCCGNAGCCCATCACGAA
rJMSF021M10+ CCTCGTGGGGAAGATCTCCGCGCAGAGGATGTTCGGGATCGGCCCGTAGCCCATCACGAA
JMFN007F08- CCTCGTGGGGAAGATCTCCGCGCAGAGGATGTTCGGGATCGGCCCGTAGCCCATCACGAA
rJMSF010C23+ CCTCGTGGGGAAGATCTCCGCGCAGAGGATGTTCGGGATAGGCCCGTAGCCCATCACGAA
rJMFF013C21+ CCTCGTGGGGAAGATCTCCGCGCAGAGGATGTTCGGGATCGGCCCGTAGCCCATCACGAA
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consensus CCTCGTGGGGAAGATCTCCGCGCAGAGGATGTTCGGGATCGGCCCGTAGCCCATCACGAA

. : . : . : . : . : . :
rJMFF002F08+ GCTGCAGAAGTAGAGGATCACGCAGATGGTGGAGAGCACCGCGTGGGCAACGCTGCCGAG
rJMSF051J12+ GCTGCAGAAGTAGAGGATCACGCAGATGGTGGAGAGCACCGCGTGGGCAACGCTGCCGAG
rJMFF013L14+ GCTGCAGAAGTAGAGGATCACGCAGATGGTGGAGAGCACCGCGTGGGCAACGCTGCCGAG
rJMSF021M10+ GCTGCAGAAGTAGAGGATCACGCAGATGGTGGAGAGCACCGCGTGGGCAACGCTGCCGAG
JMFN007F08- GCTGCAGAAGTAGAGGATCACGCAGATGGTGGAGAGCACCGCGTGGGCAACGCTGCCGAG
rJMSF010C23+ GCTGCAGAAGTAGAGGATCACGCAGATGGTGGAGAGCACCGCGTGGG
rJMFF013C21+ GCTGCAGAAGTAGAGGATCACGCAGATGGTGGAGAGCACCGCGTGGGCAACGCTGCCGAG
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consensus GCTGCAGAAGTAGAGGATCACGCAGATGGTGGAGAGCACCGCGTGGGCAACGCTGCCGAG

. : . : . : . : . : . :
rJMFF002F08+ GTTGATAACGTTGCCAAGGACGAGTACAACGAGGGAGAATATCAGAACGGGGATTGTGGA
rJMSF051J12+ GTTGATAACGTTGCCAAGGACGAGTACAACGAGGGAGAATATCAGAACGGGGATTGTGGA
rJMFF013L14+ GTTGATAACGTTGCCAAGGACGAGTACAACGANGGAGAATATCAGAACG
rJMSF021M10+ GTTGATAACGTTGCCAAGGACGAGTACAACGAGGGAGAATATCAGAACGGGGATTGTGGA
JMFN007F08- GTTGATAACGTTGCCAAGGACGAGTACAACGAGGGAGAA
rJMFF013C21+ GTTGATAACGTTGCCAAGGACGAGTACAACGAGGGAGAATATCANAACGGGGATTGTGGA
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consensus GTTGATAACGTTGCCAAGGACGAGTACAACGAGGGAGAATATCAGAACGGGGATTGTGGA

. : . : . : . : . : . :
rJMFF002F08+ GAGCAGCAGTGTCCTTCTGCCAGAAACATCCATGAACCGCATAGCAACGGGCTATGGAAG
rJMSF051J12+ GAGCAGCAGTGTCCTTCTGCCAGAAACATCCATGAACCGCATAGCAACGG
rJMSF021M10+ GAGCAGCAGTGTCCTTCTGCCAGAAACATCCATGAACCGCATAGCAACGG-CTATGGAAG
rJMFF013C21+ GAGCAGCAGTGTCCTTCTGCCAGAAA
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consensus GAGCAGCAGTGTCCTTCTGCCAGAAACATCCATGAACCGCATAGCAACGGGCTATGGAAG

. : . : . : . : . : . :
rJMFF002F08+ GAAGCATTAAAAGGGTCGTAAAAGCACTGATAAGG
rJMSF021M10+ GAAGCATTAAAAGGTTCGTAAAAGCACTGATAAGGAA
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consensus GAAGCATTAAAAGGGTCGTAAAAGCACTGATAAGGAA