Alignment Contig 9798

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF044P22+ ACCCTGGAGAGTTTTTTTTTTTTTTTTGGGAAAACXXXXXXXXXXXXXXXXXXXCTGAAA
____________________________________________________________
consensus ACCCTGGAGAGTTTTTTTTTTTTTTTTGGGAAAACNNNNNNNNNNNNNNNNNNNCTGAAA

. : . : . : . : . : . :
rJMFF044P22+ TCAGTTTTGTGGGTACAAGAATTTGTCAAATGTCTAGGAATCATGAAAATTCTCACTATG
rJMFF034O22+ CAAGAATTTGTCAAATGTCTAGGAATCATGAAAATTCTCACTATG
rJMFF034N17+ AATGTCTAGGAATCATGAAAATTCTCACTATG
rJMSF041I08+ AATTCTCACTATG
rJMFF039K23+ AATGTCTAGGAATCATGAAAATTCTCACTATG
rJMSF032F15+ TAGGAATCATGAAAATTCTCACTATG
rJMSF024M05+ GAAAATTCTCACTATG
____________________________________________________________
consensus TCAGTTTTGTGGGTACAAGAATTTGTCAAATGTCTAGGAATCATGAAAATTCTCACTATG

. : . : . : . : . : . :
rJMFF044P22+ -TAACAAACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
rJMFF034O22+ -TAACAAACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
rJMFF034N17+ -TAACAAACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
rJMFF046N14+ GCTATCTACAAAGCATAAAATTGAA
rJMSF041I08+ -TAACAAACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
rJMFF039K23+ -TAACAAACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
rJMSF032F15+ GTAACAAACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
rJMSF031O17+ GTAACAAACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
rJMSF001K06+ GTAACAAACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
rJMSF047A24+ AACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
rJMSF024M05+ -TAACAAACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
rJMSF024I11+ TATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA
____________________________________________________________
consensus -TAACAAACATAAATATTCATCCCGAATCATGCTTGCTATCTACAAAGCATAAAATTGAA

. : . : . : . : . : . :
rJMFF044P22+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMFF034O22+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMFF034N17+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMFF046N14+ AAGGTTAGAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMSF041I08+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMFF039K23+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMSF032F15+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMSF031O17+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMSF001K06+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMSF047A24+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMSF024M05+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
rJMSF024I11+ AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT
____________________________________________________________
consensus AAGGTT-GAATGAAGGACAAGATAGCTTGCACCACTATGGTGGCATATATACATACATAT

. : . : . : . : . : . :
rJMFF044P22+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMFF034O22+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMFF034N17+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMFF046N14+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMSF041I08+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMFF039K23+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMSF032F15+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMSF031O17+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMSF001K06+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMSF047A24+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMSF024M05+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
rJMSF024I11+ ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT
____________________________________________________________
consensus ACCGAGAGGAGACTAGGCAGATGACACCAAAATTATAGTCATCAACTTCATTGGTTGGAT

. : . : . : . : . : . :
rJMFF044P22+ CTAAAAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMFF034O22+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMFF034N17+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMFF046N14+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMSF041I08+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMFF039K23+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMSF032F15+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMSF031O17+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMSF001K06+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMSF047A24+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMSF024M05+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
rJMSF024I11+ CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC
____________________________________________________________
consensus CTAAGAATGCGCAAAACCTCACCTTGCTTGAGTTCACTCATTTACTATCTGAACAAGTAC

. : . : . : . : . : . :
rJMFF044P22+ TTGGACGGGAAACACACATACAACGTCGATTACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMFF034O22+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMFF034N17+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMFF046N14+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMSF041I08+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMFF039K23+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMSF032F15+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMSF031O17+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMSF001K06+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMSF047A24+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMSF024M05+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
rJMSF024I11+ TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT
____________________________________________________________
consensus TTGGACGGGAAACACACATACAACGTCGATAACAGATGCTTCTGAGAGGGGAGACAGGAT

. : . : . : . : . : . :
rJMFF044P22+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMFF034O22+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMFF034N17+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMFF046N14+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMSF041I08+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMFF039K23+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMSF032F15+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMSF031O17+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMSF001K06+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMSF047A24+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMSF024M05+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
rJMSF024I11+ TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA
JMSF042F03+ GCGGCA
____________________________________________________________
consensus TATGATGTGCCTTGGAAGGTTAACCTATCTCGAAGAGTGTCAAAAATTGAAGCAGCGGCA

. : . : . : . : . : . :
rJMFF044P22+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMFF034O22+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMFF034N17+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMFF046N14+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMSF041I08+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMFF039K23+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMSF032F15+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMSF031O17+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMSF001K06+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMSF047A24+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMSF024M05+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
rJMSF024I11+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
JMSF042F03+ GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT
____________________________________________________________
consensus GCATTTTGTGAAAAAGTCAGCTTCAGCCGCCCAAGCAATTCACCATCTTTAGCCTGAGAT

. : . : . : . : . : . :
rJMFF044P22+ GCAGCATCAGCAGCT
rJMFF034O22+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
rJMFF034N17+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
rJMFF046N14+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
rJMSF041I08+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
rJMFF039K23+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
rJMSF032F15+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
rJMSF031O17+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
rJMSF001K06+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
rJMSF047A24+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
rJMSF024M05+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
rJMSF024I11+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
JMSF042F03+ GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA
____________________________________________________________
consensus GCAGCATCAGCAGCTTCCTTGGCCATTCCAATTCCAGCATAAGCCTCTGCTCTTTCCCGA

. : . : . : . : . : . :
rJMFF034O22+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
rJMFF034N17+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
rJMFF046N14+ GGATCAGCCAGCTTG
rJMSF041I08+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
rJMFF039K23+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
rJMSF032F15+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
rJMSF031O17+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
rJMSF001K06+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
rJMSF047A24+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
rJMSF024M05+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
rJMSF024I11+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
JMSF042F03+ GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT
____________________________________________________________
consensus GGATCAGCCAGCTTGGGTATGTATTTGAGTGCTTCCCCCTTATCTTCCGCTTCAACACAT

. : . : . : . : . : . :
rJMFF034O22+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
rJMFF034N17+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
rJMSF041I08+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
rJMFF039K23+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
rJMSF032F15+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
rJMSF031O17+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
rJMSF001K06+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
rJMSF047A24+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
rJMSF024M05+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
rJMSF024I11+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
JMSF042F03+ GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA
____________________________________________________________
consensus GCCTCTACAAATGGTTTGTAGCCAATTGGTGGTCTCTTCTCTTTCGAGAATTTCTCTAAA

. : . : . : . : . : . :
rJMFF034O22+ GCATCCCAGTCCCTGATA
rJMFF034N17+ GCATCCCAGTCCCTGATAGTTGCCAAAGCAAAAACTTTTAGCCAATACCACCTCTTTTCT
rJMSF041I08+ GCATCCCAGTCCCTGATA
rJMFF039K23+ GCATCCCAGTCCCTGATAGTTGCCAAAGCAAAAACTTTTAGCCAATACCACCTCTTTTCT
rJMSF032F15+ GCATCCCAGTCCCTGATAGTTGCCAAAGCAAAAACTTTTAGCCAATACCACCTCTTTTCT
rJMSF031O17+ GCATCCCAGTCCCTGATAGTTGCCAAAGCAAAAACTTTTAGCCAATACCACCTCTTTTCT
rJMSF001K06+ GCATCCCAGTCCCTGATAGTTGCCAA-GCAAAAACTTTTAGCCAATACCACCTCTTTTCT
rJMSF047A24+ GCATCCCAGTCCCTGATAGTTGCCAAAGCAAAAACTTTTAGCCAATACCACCTCTTTTCT
rJMSF024M05+ GCATCCCAGTCCCTGATAGTTGCCAAAGCAAAAACTTTTAGCCAATACCACCTCTTTTCT
rJMSF024I11+ GCATCCCAGTCCCTGATAGTTGCCAAAGCAAAAACTTTTAGCCAATACCACCTCTTTTCT
JMSF042F03+ GCATCCCAGTCCCTGATAGTTGCCAAAGCAAAAACTTTTAGCCAATACCACCTCTTTTCT
____________________________________________________________
consensus GCATCCCAGTCCCTGATAGTTGCCAAAGCAAAAACTTTTAGCCAATACCACCTCTTTTCT

. : . : . : . : . : . :
rJMFF034N17+ GATACCTTGAATTCTGNTTTGACTTTATTTGCAGCGCGATGATTTCCCA
rJMFF039K23+ GATACCTTGAATTCTGGTTTGACTTTATTTGCAGCGCGATGATTTCCCA
rJMSF032F15+ GATACCTTGAATTCTGTTTTGACTTTATTTGCAGCGCGATGATTTCCCAGAACAAATACA
rJMSF031O17+ GATACCTTGAATTCTGTTTTGACTTTATT-GCAGCGCGATGATTTCCCAGANCAA-TACA
rJMSF001K06+ GATACCTTGAATTCTGTTTTGACTTTATTTGCAGCGCGATGATTTCCCAGAACAA-TACA
rJMSF047A24+ GATACCTTGAATTCTGTTTTGACTTTATTTGCAGCGCGATGATTTCCCAGAACAA-TACA
rJMSF024M05+ GATACCTTGAATTCTGNTTTGACTTTATTTGCAGCGCGATGATTCCCCAGAACAA-TACA
rJMSF024I11+ GATACCTTGAATTCTGTTTTGACTTTATTTGCAGCGCGATGATTTCCCAGAACAA-TACA
JMSF042F03+ GATACCTTGAATTCTGTTTTGACTTTATTTGCAGCGCGATGATTTCCCAGAACAA-TACA
JMFF034N17- TTTTGACTTTATTTGCAGCGCGATGATTTCCCAGAACAA-TACA
____________________________________________________________
consensus GATACCTTGAATTCTGTTTTGACTTTATTTGCAGCGCGATGATTTCCCAGAACAA-TACA

. : . : . : . : . : . :
rJMSF032F15+ TGTACGAATAGTATCACTGATACTTGAATCAACAAAGAT
rJMSF031O17+ TGTACGAATAGTATCACTGAT
rJMSF001K06+ TGTACGAATAGTATCACTGATACT
rJMSF047A24+ TGTACGAATAGTATCACTGATACTTGAA
rJMSF024M05+ TGTACGAATAGTATCACTG
rJMSF024I11+ TGTACGAATAGTATCACTGATACTTGAATCACCAAAGATGGCCTGGTTAGTTG
JMSF042F03+ TGTACGAATAGTATCACTGATACTTGAATCAACAAAGATGGCCTGTTTAGTTGTCACCTC
JMFF034N17- TGTACGAATAGTATCACTGATACTTGAATCAACAAAGATGGCCTGTTTAGTTGTCACCTC
____________________________________________________________
consensus TGTACGAATAGTATCACTGATACTTGAATCAACAAAGATGGCCTGTTTAGTTGTCACCTC

. : . : . : . : . : . :
JMSF042F03+ CAACTCATGCTGTATCCTTAATAATTTTGCATGCTCTTCAGCTGCCTTTGACTCAAAAAC
JMFF034N17- CAACTCATGCTGTATCCTTAATAATTTTGCATGCTCTTCAGCTGCCTTTGACTCAAAAAC
____________________________________________________________
consensus CAACTCATGCTGTATCCTTAATAATTTTGCATGCTCTTCAGCTGCCTTTGACTCAAAAAC

. : . : . : . : . : . :
JMSF042F03+ ATGTTCTTTTGTTTCTGCAAAAAGGCCATGGGCCTTCTCAACAAGTTTTATACGAGGACC
JMFF034N17- ATGTTCTTTTGTTTCTGCAAAAAGGCCATGGGCCTTCTCAACAAGTTT-ATACGAGGACC
____________________________________________________________
consensus ATGTTCTTTTGTTTCTGCAAAAAGGCCATGGGCCTTCTCAACAAGTTTTATACGAGGACC

. : . : . : . : . : . :
JMSF042F03+ ATGCAGTGGAGATCCTTTGCTTGCCATTGGATTTTTTGCTAATTCCCATGATTCTTTCCA
JMFF034N17- ATGCAGTGGAGATCCTTTGCTTGCCATTGGATTTTTTGCTAATTCCCATGATTCTTTCCA
____________________________________________________________
consensus ATGCAGTGGAGATCCTTTGCTTGCCATTGGATTTTTTGCTAATTCCCATGATTCTTTCCA

. : . : . : . : . : . :
JMSF042F03+ TAAAAGAAAAGCTACATCCTGCAGTTGTCCAGTAGATAGGAAGAAGTCTTTCAAAAATTC
JMFF034N17- TAAAAGAAAAGCTACATCCTGCAGTTGTCCAGTAGATAGGAAGAAGTCTTTCAAAAATTC
____________________________________________________________
consensus TAAAAGAAAAGCTACATCCTGCAGTTGTCCAGTAGATAGGAAGAAGTCTTTCAAAAATTC

. : . : . : . : . : . :
JMSF042F03+ ATGCTTGTAAAGCCGTGCATAACTAATAAATAAATCACGTGGCAGTGGTCTAGACTGTAT
JMFF034N17- ATGCTTGTAAAGCCGTGCATAACTAATAAATAAATCACGTGGCAGTGGTCTAGACTGTAT
____________________________________________________________
consensus ATGCTTGTAAAGCCGTGCATAACTAATAAATAAATCACGTGGCAGTGGTCTAGACTGTAT

. : . : . : . : . : . :
JMSF042F03+ AGTTCCAAAGAGCTCCAAAGCTGGTCTCTTTTGCCAGATATGAAGGAGGACTAGGTAAAC
JMFF034N17- AGTTCCAAAGAGCTCCAAAGCTGGTCTCTTTTGCCAGATATGAAGGAGGACTAGGTAAAC
____________________________________________________________
consensus AGTTCCAAAGAGCTCCAAAGCTGGTCTCTTTTGCCAGATATGAAGGAGGACTAGGTAAAC

. : . : . : . : . : . :
JMSF042F03+ AAGA
JMFF034N17- AAGAT
____________________________________________________________
consensus AAGAT