Alignment Contig 9779

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF043E03+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTCGTAGATGGCATTCATTGCC
rJMFF047L14+ CGTAGATGGCATTCATTGCC
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTCGTAGATGGCATTCATTGCC

. : . : . : . : . : . :
rJMFF043E03+ AAAGTGGAACTCGTAAAAGTTGTAATATGTGAATGATGTCTATAAATAGTTTCCCATACA
rJMFF047L14+ AAAGTGGAACTCGTAAAAGTTGTAATATGTGAATGATGTCTATAAATAGTTTCCCATACA
____________________________________________________________
consensus AAAGTGGAACTCGTAAAAGTTGTAATATGTGAATGATGTCTATAAATAGTTTCCCATACA

. : . : . : . : . : . :
rJMFF043E03+ TTTGACAGAATCATAAAAGCTAGTAAACAGAGTAACAAATGGCAATATCGCGAAAGTTAA
rJMFF047L14+ TTTGACAGAATCATAAAAGCTAGTAAACAGAGTAACAAATGGCAATATCGCGAAAGTTAA
rJMSF010M13+ TTTGACAGAATCATAAAAGCTAGTAAACAGAGTAACAAATGGCAATATCGCGAAAGTTAA
rJMSF034F11+ TAAAAGCTAGTAAACAGAGTAACAAATGGCAATATCGCGAAAGTTAA
rJMSF009G06+ AACAGAGTAACAAATGGCAATATCGCGAAAGTTAA
rJMSF017K04+ TAACAAATGGCAATATCGCGAAAGTTAA
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consensus TTTGACAGAATCATAAAAGCTAGTAAACAGAGTAACAAATGGCAATATCGCGAAAGTTAA

. : . : . : . : . : . :
rJMFF043E03+ GAATTTAGTCCGAAACTAGTAGCACGCGGCTCAACAGATTCAAAGAGAGACCAATCTCAA
rJMFF047L14+ GAATTTAGTCCGAAACTAGTAGCACGCGGCTCAACAGATTCAAAGAGAGACCAATCTCAA
rJMSF010M13+ GAATTTAGTCCGAAACTAGTAGCACGCGGCTCAACAGATTCAAAGAGAGACCAATCTCAA
rJMSF034F11+ GAATTTAGTCCGAAACTAGTAGCACGCGGCTCAACAGATTCAAAGAGAGACCAATCTCAA
rJMSF009G06+ GAATTTAGTCCGAAACTAGTAGCACGCGGCTCAACAGATTCAAAGAGAGACCAATCTCAA
rJMSF032J02+ CCGAAACTAGTAGCACGCGGCTCAACAGATTCAAAGAGAGACCAATCTCAA
rJMSF032K03+ GCGGCTCAACAGATTCAAAGAGAGACCAATCTCAA
rJMSF017K04+ GAATTTAGTCCGAAACTAGTAGCACGCGGCTCAACAGATTCAAAGAGAGACCAATCTCAA
rJMSF013C24+ AAGAGAGACCAATCTCAA
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consensus GAATTTAGTCCGAAACTAGTAGCACGCGGCTCAACAGATTCAAAGAGAGACCAATCTCAA

. : . : . : . : . : . :
rJMFF043E03+ TGTGTAGTGTAAACACAACAAATGACCAAACATGCCAAGAGAAAATATTACATGGGGGTG
rJMFF047L14+ TGTGTAGTGTAAACACAACAAATGACCAAACATGCCAAGAGAAAATATTACATGGGGGTG
rJMSF010M13+ TGTGTAGTGTAAACACAACAAATGACCAAACATGCCAAGAGAAAATATTACATGGGGGTG
rJMSF034F11+ TGTGTAGTGTAAACACAACAAATGACCAAACATGCCAAGAGAAAATATTACATGGGGGTG
rJMSF009G06+ TGTGTAGTGTAAACACAACAAATGACCAAACATGCCAAGAGAAAATATTACATGGGGGTG
rJMSF032J02+ TGTGTAGTGTAAACACAACAAATGACCAAACATGCCAAGAGAAAATATTACATGGGGGTG
rJMSF032K03+ TGTGTAGTGTAAACACAACAAATGACCAAACATGCCAAGAGAAAATATTACATGGGGGTG
rJMSF017K04+ TGTGTAGTGTAAACACAACAAATGACCAAACATGCCAAGAGAAAATATTACATGGGGGTG
rJMSF013C24+ TGTGTAGTGTAAACACAACAAATGACCAAACATGCCAAGAGAAAATATTACATGGGGGTG
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consensus TGTGTAGTGTAAACACAACAAATGACCAAACATGCCAAGAGAAAATATTACATGGGGGTG

. : . : . : . : . : . :
rJMFF043E03+ ACGCGAGCCTTGTACATGCAAATGTATGCCATGTGCCAGTCACCTCCACCAGAAAGTTTA
rJMFF047L14+ ACGCGAGCCTTGTACATGCAAATGTATGCCATGTGCCAGTCACCTCCACCAGAAAGTTTA
rJMSF010M13+ ACGCGAGCCTTGTACATGCAAATGTATGCCATGTGCCAGTCACCTCCACCAGAAAGTTTA
rJMSF034F11+ ACGCGAGCCTTGTACATGCAAATGTATGCCATGTGCCAGTCACCTCCACCAGAAAGTTTA
rJMSF009G06+ ACGCGAGCCTTGTACATGCAAATGTATGCCATGTGCCAGTCACCTCCACCAGAAAGTTTA
rJMSF032J02+ ACGCGAGCCTTGTACATGCAAATGTATGCCATGTGCCAGTCACCTCCACCAGAAAGTTTA
rJMSF032K03+ ACGCGAGCCTTGTACATGCAAATGTATGCCATGTGCCAGTCACCTCCACCAGAAAGTTTA
rJMSF017K04+ ACGCGAGCCTTGTACATGCAAATGTATGCCATGTGCCAGTCACCTCCACCAGAAAGTTTA
rJMSF013C24+ ACGCGAGCCTTGTACATGCAAATGTATGCCATGTGCCAGTCACCTCCACCAGAAAGTTTA
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consensus ACGCGAGCCTTGTACATGCAAATGTATGCCATGTGCCAGTCACCTCCACCAGAAAGTTTA

. : . : . : . : . : . :
rJMFF043E03+ GGGATGTCTTCCTCGCGTTGTGGTATTGGATTGTCATCGTCGAATTGAATCCATTTTCCA
rJMFF047L14+ GGGATGTCTTCCTCGCGTTGTGGTATTGGATTGTCATCGTCGAATTGAATCCATTTTCCA
rJMSF010M13+ GGGATGTCTTCCTCGCGTTGTGGTATTGGATTGTCATCGTCGAATTGAATCCATTTTCCA
rJMSF034F11+ GGGATGTCTTCCTCGCGTTGTGGTATTGGATTGTCATCGTCGAATTGAATCCATTTTCCA
rJMSF009G06+ GGGATGTCTTCCTCGCGTTGTGGTATTGGATTGTCATCGTCGAATTGAATCCATTTTCCA
rJMSF032J02+ GGGATGTCTTCCTCGCGTTGTGGTATTGGATTGTCATCGTCGAATTGAATCCATTTTCCA
rJMSF032K03+ GGGATGTCTTCCTCGCGTTGTGGTATTGGATTGTCATCGTCGAATTGAATCCATTTTCCA
rJMSF017K04+ GGGATGTCTTCCTCGCGTTGTGGTATTGGATTGTCATCGTCGAATTGAATCCATTTTCCA
rJMSF013C24+ GGGATGTCTTCCTCGCGTTGTGGTATTGGATTGTCATCGTCGAATTGAATCCATTTTCCA
JMFS157A07- GAATCCATTTTCCA
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consensus GGGATGTCTTCCTCGCGTTGTGGTATTGGATTGTCATCGTCGAATTGAATCCATTTTCCA

. : . : . : . : . : . :
rJMFF043E03+ TTTTCTTGCTTGACCCAGGCAACGTAGTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC
rJMFF047L14+ TTTTCTTGCTTGACCCAGGCAACGTAGTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC
rJMSF010M13+ TTTTCTTGCTTGACCCAGGCAACGTAGTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC
rJMSF034F11+ TTTTCTTGCTTGACCCAGGCAACGTAGTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC
rJMSF009G06+ TTTTCTTGCTTGACCCAGGCAACGTAGTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC
rJMSF032J02+ TTTTCTTGCTTGACCCAGGCAACGTANTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC
rJMSF032K03+ TTTTCTTGCTTGACCCAGGCAACGTAGTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC
rJMSF017K04+ TTTT--TGCTTGACCCAGGCAACGTAGTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC
rJMSF013C24+ TTTTCTTGCTTGACCCAGGCAACGTAGTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC
JMFS157A07- TTTTCTTGCTTGACCCAGGCAACGTAGTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC
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consensus TTTTCTTGCTTGACCCAGGCAACGTAGTGCCCTGAGTCTGCACTTCTTCCCTTGTGAGTC

. : . : . : . : . : . :
rJMFF043E03+ AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGCAAAACACCT
rJMFF047L14+ AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGCAAAACACCT
rJMSF010M13+ AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGCAAAACACCT
rJMSF034F11+ AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGCAAAACACCT
rJMSF009G06+ AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGCAAAACACCT
rJMSF032J02+ AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGNAAAACACCT
rJMSF032K03+ AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGCAAAACACCT
rJMSF017K04+ AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGCAAAACACCT
rJMSF013C24+ AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGCAAAACACCT
JMFS157A07- AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGCAAAACACCT
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consensus AGCACAGCAACTAAATCATATATGCCGGTCAAGTGTTGTTCCTTCTCGGGCAAAACACCT

. : . : . : . : . : . :
rJMFF043E03+ TCTTGGGGTGCTGGTTTTGAGGACTCTCCACTTCCACTGGATGATTCCACTGCATCAGTC
rJMFF047L14+ TCTTGGGGTGCTGGTTTTGAG
rJMSF010M13+ TCTTGGGGTGCTGGTTTTGAGGACTCTCCACTTCCACTGGATGATTCCACTGCATCAGTC
rJMSF034F11+ TCTTGGGGTGCTGGTTTTGAGGACTCTCCACTTCCACTGGATGATTCCACTGCATCAGTC
rJMSF009G06+ TCTTGGGGTGCTGGTTTTGAGGACTCTCCACTTCCACTGGATGATTCCACTGCATCAGTC
rJMSF032J02+ TCTTGGGGTGCTGGTTTTGAGGACTCTCCACTTCCACTGGATGATTCCNCTGCATCAGTC
rJMSF032K03+ TCTTGGGGTGCTGGTTTTGAGGACTCTCCACTTCCACTGGATGATTCCACTGCATCAGTC
rJMSF017K04+ TCTTGGGGTGCTGGTTTTGAGGACTCTCCACTTCCACTGGATGATTCCACTGCATCAGTC
rJMSF013C24+ TCTTGGGGTGCTGGTTTTGAGGACTCTCCACTTCCACTGGATGATTCCACTGCATCAGTC
JMFS157A07- TCTTGGGGTGCTGGTTTTGAGGACTCTCCACTTCCACTGGATGATTCCACTGCATCAGTC
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consensus TCTTGGGGTGCTGGTTTTGAGGACTCTCCACTTCCACTGGATGATTCCACTGCATCAGTC

. : . : . : . : . : . :
rJMFF043E03+ ATCTTGACATCATTGTCTTTCGAGCT
rJMSF010M13+ ATCTTGACATCATTGTCTTTCGAGCTAGAACTCTTCCCACTAGCTTGTAAACCAAGTTTC
rJMSF034F11+ ATCTTGACATCATTGTCTTTCGAGCTAGAACTCTTCCCACTAGCTTGTAAACCAAGTTTC
rJMSF009G06+ ATCTTGACATCATTGTCTTTCGAGCTAGAACTCTTCCCACTAGCTTGTAAACCAAGTTTC
rJMSF032J02+ ATCTTGACATCATTGTCTTTCGAGCTAGAACTCTTCCCACTAGCTTGTAAACCAAGTTTC
rJMSF032K03+ ATCTTGACATCATTGTCTTTCGAGCTAGAACTCTTCCCACTAGCTTGTAAACCAAGTTTC
rJMSF017K04+ ATCTTGACATCATTGTCTTTCGAGCTAGAACTCTTCCCACTAGCTTGTAAACCAAGTTTC
rJMSF013C24+ ATCTTGACATCATTGTCTTTCGAGCTAGAACTCTTCCCACTAGCTTGTAAACCAAGTTTC
JMFS157A07- ATCTTGACATCATTGTCTTTCGAGCTAGAACTCTTCCCACTAGCTTGTAAACCAAGTTTC
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consensus ATCTTGACATCATTGTCTTTCGAGCTAGAACTCTTCCCACTAGCTTGTAAACCAAGTTTC

. : . : . : . : . : . :
rJMSF010M13+ TTACCCTCCTCATCTCTTAAAGCCTTGCGAGGACCTTCCAATCTCTTGCGCAGATCATCT
rJMSF034F11+ TTACCCTCCTCATCTCTTAAAGCCTTGCGAGGACCTTCCAATCTCTTGCGCAGATCATCT
rJMSF009G06+ TTACCCTCCTCATCTCTTAAAGCCTTGCGAGGACCTTCCAATCTCTTGCGCAGATCATCT
rJMSF032J02+ TTACCCTCCTCATCTCTTANAGCCTTGNGAGGACCTTCCAATCTCTTGNGCAGATCATCT
rJMSF032K03+ TTACCCTCCTCATCTCTTAAAGCCTTGCGAGGACCTTCCAATCTCTTGCGCAGATCATCT
rJMSF017K04+ TTACCCTCCTCATCTCTTAAAGCCTTGCGAGGACCTTCCAATCTCTTGCGCAGATCATCT
rJMSF013C24+ TTACCCTCCTCATCTCTTAAAGCCTTGCGAGGACCTTCCAATCTCTTGCGCAGATCATCT
JMFS157A07- TTACCCTCCTCATCTCTTAAAGCCTTGCGAGGACCTTCCAATCTCTTGCGCAGATCATCT
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consensus TTACCCTCCTCATCTCTTAAAGCCTTGCGAGGACCTTCCAATCTCTTGCGCAGATCATCT

. : . : . : . : . : . :
rJMSF010M13+ GAACACAAGTCAAAGACATCCAATTCCAATGGATAATCTACTTTCCGCAAAATCTTTGCC
rJMSF034F11+ GAACACAAGTCAAAGACATCCAATTCCAATGGATAATCTACTTTCCGCAA--TCTTTGCC
rJMSF009G06+ GAACACAAGTCAAAGACATCCAATTCCAATGGATAATCTACTTTCCGCAAAATCTTTGCC
rJMSF032J02+ GANCACAANTCAAAGACATCCAATTCCAATGGATAATCTACTTTCCNCAAAATCTTTGCC
rJMSF032K03+ GAACACAAGTCAAAGACATCCAATTCCAATGGATAATCTACTTTCCGCAAAATCTTTGCC
rJMSF017K04+ GAACACAAGTCAAAGACATCCAATTCCAATGGATAATCTACTTTCCGCAAAATCTTTGCC
rJMSF013C24+ GAACACAAGTCAAAGACATCCAATTCCAATGGATAATCTACTTTCCGCAAAATCTTTGCC
JMFS157A07- GAACACAAGTCAAAGACATCCAATTCCAATGGATAATCTACTTTCCGCAAAATCTTTGCC
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consensus GAACACAAGTCAAAGACATCCAATTCCAATGGATAATCTACTTTCCGCAAAATCTTTGCC

. : . : . : . : . : . :
rJMSF010M13+ TTTTGATTTGATTCCCTTTTCCAGAAAAATCGAACAAACTGAATGGTCAAGTATCTTGGC
rJMSF034F11+ TTTTGATTTGATTCCCTTTTCCAGAAAAATCGAACAAACTGAATGGTCAAGTATCTTGGC
rJMSF009G06+ TTTTGATTTGATTCCCTTTTCCAGAAAAATCGAACAAACTGAATGGTCAAGTATCTTGGC
rJMSF032J02+ TTTTGA
rJMSF032K03+ TTTTGATTTGATTCCCTTTTCCAGAAAAATCGAACAAACTGAATGGTCAAGTATCTTGGC
rJMSF017K04+ TTTTGATTTGATTCCCTTTTCCAGAAAAATCGAACAAACTGAATGGTCAAGTATCTTGGC
rJMSF013C24+ TTTTGATTTGATTCCCTTTTCCAGAAAAATCGAACAAACTGAATGGTCAAGTATCTTGGC
JMFS157A07- TTTTGATTTGATTCCCTTTTCCAGAAAAATCGAACAAACTGAATGGTCAAGTATCTTGGC
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consensus TTTTGATTTGATTCCCTTTTCCAGAAAAATCGAACAAACTGAATGGTCAAGTATCTTGGC

. : . : . : . : . : . :
rJMSF010M13+ AAACCATTAAT
rJMSF034F11+ AAACCATTAATTC
rJMSF009G06+ AAACCATTAATTCGAGAATCTTTTAGGTAAATTGCACTGCGACCTAAAGA
rJMSF032K03+ AAACCATTAATTCGAGAATCTTTTAGGTAAATTGCACTGCGACCT
rJMSF017K04+ AAACCATTAATTCGAGAATCTTTTAGGTAAATTGCACTGCGACCTAAAGA
rJMSF013C24+ AAACCATTAATTCGAGAATCTTTTAGGTAAATTGCACTGCGACCTAAAGAAGGAGAAGCT
JMFS157A07- AAACCATTAATTCGAGAATCTTTTAGGTAAATTGCACTGCGACCTAAAGAAGGAGAAGCT
____________________________________________________________
consensus AAACCATTAATTCGAGAATCTTTTAGGTAAATTGCACTGCGACCTAAAGAAGGAGAAGCT

. : . : . : . : . : . :
rJMSF013C24+ TTCTCCAGTTCTGATTTCAAGCC
JMFS157A07- TTCTCCAGTTCTGATTTCAAGCCACGTTTTAAACCCTCGTGCAAATGGTTCACCTCCTGT
____________________________________________________________
consensus TTCTCCAGTTCTGATTTCAAGCCACGTTTTAAACCCTCGTGCAAATGGTTCACCTCCTGT

. : . : . : . : . : . :
JMFS157A07- GAAATGTGGCATTTAAGGGAATGCACTGCGACCTAAAGAAGGAGAAGCTT
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consensus GAAATGTGGCATTTAAGGGAATGCACTGCGACCTAAAGAAGGAGAAGCTT