Alignment Contig 9763

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF041H21+ TTTTTTTTTTTTTTGCCCAAATTAATGCATACATAATATATACCGTTAATGTTAAGGGTA
rJMFF047F01+ AATGCATACATAATATATACCGTTAATGTTAAGGGTA
rJMFF002L20+ ACCGTTAATGTTAAGGGTA
rJMSF041O01+ ATGTTAAGGGTA
rJMFF003P13+ ACCGTTAATGTTAAGGGTA
rJMSF045L12+ GTTAGGGTA
rJMSF029B23+ TTAGGGTA
rJMSF023O10+ GTTAGGGTA
rJMSF002M11+ GTTAGGGTA
rJMSF015N06+ GTTAGGGTA
rJMSF007A03+ GTTAGGGTA
____________________________________________________________
consensus TTTTTTTTTTTTTTGCCCAAATTAATGCATACATAATATATACCGTTAATGGTTAGGGTA

. : . : . : . : . : . :
rJMFF041H21+ CAATACACAATACCTACATGG-TTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
rJMFF047F01+ CGATACACAATACCTACATGG-TTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
rJMFF002L20+ CAATACACAATACCTACATGG-TTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
rJMSF041O01+ CAATACACAATACCTACATGG-TTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
rJMFF003P13+ CAATACACAATACCTACATGG-TTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
rJMSF045L12+ CAATACACAATACCTACATGG-TTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
rJMSF029B23+ CAATACACAATACCTACATGG-TTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
rJMSF023O10+ CAATACACAATACCTACATGGGTTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
rJMSF002M11+ CAATACACAATACCTACATGG-TTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
rJMSF015N06+ CAATACACAATACCTACATGGGTTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
rJMSF007A03+ CAATACACAATACCTACATGG-TTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT
____________________________________________________________
consensus CAATACACAATACCTACATGG-TTCACTCAAAATCCATTAATCCTGTCTAGTTTGCAAAT

. : . : . : . : . : . :
rJMFF041H21+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA
rJMFF047F01+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA
rJMFF002L20+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA
rJMSF041O01+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA
rJMFF003P13+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA
rJMSF045L12+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCAACTCA
rJMSF029B23+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA
rJMSF023O10+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA
rJMSF002M11+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA
rJMSF015N06+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA
rJMSF007A03+ TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA
____________________________________________________________
consensus TTTTGCCCTGTCAACCAAGTATGTTTTCACCTCGTTTTCTGTCCACTATATCTCACCTCA

. : . : . : . : . : . :
rJMFF041H21+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
rJMFF047F01+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
rJMFF002L20+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
rJMSF041O01+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
rJMFF003P13+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
rJMSF045L12+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
rJMSF029B23+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
rJMSF023O10+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
rJMSF002M11+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
rJMSF015N06+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
rJMSF007A03+ TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT
____________________________________________________________
consensus TCTCATCATTCAGTAATCTCCACAGCATTTCTGCGGCTCGAGGGAAAAACATTTGCCTCT

. : . : . : . : . : . :
rJMFF041H21+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
rJMFF047F01+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
rJMFF002L20+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
rJMSF041O01+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
rJMFF003P13+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
rJMSF045L12+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
rJMSF029B23+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
rJMSF023O10+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
rJMSF002M11+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
rJMSF015N06+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
rJMSF007A03+ TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC
____________________________________________________________
consensus TGTAATGGTAAGCACAAACTTGTTCTTGTTAGAATTGACCAGATGAAGCTCGAGGTTTTC

. : . : . : . : . : . :
rJMFF041H21+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC
rJMFF047F01+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC
rJMFF002L20+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC
rJMSF041O01+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC
rJMFF003P13+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACCATAAGGCAAC
rJMSF045L12+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC
rJMSF029B23+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC
rJMSF023O10+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC
rJMSF002M11+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC
rJMSF015N06+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC
rJMSF007A03+ CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC
____________________________________________________________
consensus CCTTGATTGAGTTTAGATGTTGGGAGACAAATAGCACTCCCATTACAACAATAAGGCAAC

. : . : . : . : . : . :
rJMFF041H21+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
rJMFF047F01+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
rJMFF002L20+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
rJMSF041O01+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
rJMFF003P13+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
rJMSF045L12+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
rJMSF029B23+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
rJMSF023O10+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
rJMSF002M11+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
rJMSF015N06+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
rJMSF007A03+ CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC
____________________________________________________________
consensus CAACCAATGTGCTGAAGAAGAGTGCACCGGGTTGTCTGGTCTGAACAAAGCCATAAACAC

. : . : . : . : . : . :
rJMFF041H21+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
rJMFF047F01+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
rJMFF002L20+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
rJMSF041O01+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
rJMFF003P13+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
rJMSF045L12+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
rJMSF029B23+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
rJMSF023O10+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
rJMSF002M11+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
rJMSF015N06+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
rJMSF007A03+ CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA
____________________________________________________________
consensus CATTGGAAGTCAAAATGATGAGGTCGGTTAGCCCATCATTGGAAAAATCTTCAGTCACCA

. : . : . : . : . : . :
rJMFF041H21+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
rJMFF047F01+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
rJMFF002L20+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
rJMSF041O01+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
rJMFF003P13+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
rJMSF045L12+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
rJMSF029B23+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
rJMSF023O10+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
rJMSF002M11+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
rJMSF015N06+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
rJMSF007A03+ ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA
____________________________________________________________
consensus ATGCATGCGTGGGAGGAGCAGGAAGTTCAATTGTTGCTAATATACTTCCTGCAGGAGATA

. : . : . : . : . : . :
rJMFF041H21+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGATTATCATGGACACGTA
rJMFF047F01+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGAT
rJMFF002L20+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGATTATCATGGACACGTA
rJMSF041O01+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGATTATCATGGACACGTA
rJMFF003P13+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGATTATCATGGACACGTA
rJMSF045L12+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGATTATCATGGACACGTA
rJMSF029B23+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGATTATCATGGACACGTA
rJMSF023O10+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGATTATCATGGACACGTA
rJMSF002M11+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGATTATCATGGACACGTA
rJMSF015N06+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGATTATCATGGACACGTA
rJMSF007A03+ TGATTATGGCTTCTTGATCTCCTGCTGCAAGGACCAATTCTTGATTATCATGGACACGTA
____________________________________________________________
consensus TGATTATGGCTTCTTGATCTCCTGCTGCAAGGATCAATTCTTGATTATCATGGACACGTA

. : . : . : . : . : . :
rJMFF041H21+ ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGG
rJMFF002L20+ ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGGAGATG
rJMSF041O01+ ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGGAGATG
rJMFF003P13+ ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGGAGATG
rJMSF045L12+ ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGGAGATG
rJMSF029B23+ ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGGAGATG
rJMSF023O10+ ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGGAGATG
rJMSF002M11+ ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGGAGATG
rJMSF015N06+ ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGGAGATG
rJMSF007A03+ ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGGAGATG
____________________________________________________________
consensus ATGAAAATGCCTTCAGGGTAGGTACCACCATACCACCTTCCATCATTCCCGATGGAGATG

. : . : . : . : . : . :
rJMFF002L20+ GAAGGTTTGACCATGTTGCACCAGTCAATAGCTGCCAGTTCCAGATAGCATCGTGTCCAT
rJMSF041O01+ GAAGGTTTGACCATGTTGCACCAGTCAATAGCTGCCAGTTCCAGATAGCATCGTGTCCAT
rJMFF003P13+ GAAGGTTTGACCATGTTGCACCAGTCAATAGCTGCCAGTTCCAGATAGCATCGTGTCCAT
rJMSF045L12+ GAAGGTTTGACCATGTTGCACCAGTCAATAGCTGCCAGTTCCAGATAGCATCGTGTCCAT
rJMSF029B23+ GAAGGTTTGACCATGTTGCACCAGTCAATAGCTGCCAGTTCCAGATAGCATCGTGTCCAT
rJMSF023O10+ GAAGGTTTGACCATGTTGCACCAGTCAATAGCTGCCAGTTCCAGATAGCATCGTGTCCAT
rJMSF002M11+ GAAGGTTTGACCATGTTGCACCAGTCAATAGCTGCCAGTTCCAGATAGCATCGTGTCCAT
rJMSF015N06+ GAAGGTTTGACCATGTTGCACCAGTCAATAGCTGCCAGTTCCAGATAGCATCGTGTCCAT
rJMSF007A03+ GAAGGTTTGACCATGTTGCACCAGTCAATAGCTGCCAGTTCCAGATAGCATCGTGTCCAT
____________________________________________________________
consensus GAAGGTTTGACCATGTTGCACCAGTCAATAGCTGCCAGTTCCAGATAGCATCGTGTCCAT

. : . : . : . : . : . :
rJMFF002L20+ GCAAGCCAGGTGAATAAGATGTTACCTCGCCACGATTTGTTAAAAAGATCACATCTCCAT
rJMSF041O01+ GCAAGCCAG
rJMFF003P13+ GCAAGCC
rJMSF045L12+ GCAAGCCAGGTGAATAAGATGTTACCTCGCCACGATTTGTTAAAAAGATCACATCTCCAT
rJMSF029B23+ GCAAGCCAGGTGAATAAGATGTTACCTCGCCACGATTTGTTAAAA-GATCACATCTCCAT
rJMSF023O10+ GCAAGCCAGGTGAATAAGATGTTACCTCGCCACGATTTGTTAAAAAGATCACATCTCCAT
rJMSF002M11+ GCAAGCCAGGTGAATAAGATGTTACCTCGCCACGATTTGTTAAAAAGATCACATCTCCAT
rJMSF015N06+ GCAAGCCAGGTGAATAAGATGTTACCTCGCCACGATTTGTTAAAAAGATCACATCTCCAT
rJMSF007A03+ GCAAGCCAGGTGAATAAGATGTTACCTCGCCACGATTTGTTAAAAAGATCACATCTCCAT
____________________________________________________________
consensus GCAAGCCAGGTGAATAAGATGTTACCTCGCCACGATTTGTTAAAAAGATCACATCTCCAT

. : . : . : . : . : . :
rJMFF002L20+ GGCTTCCCTTGCGATGATGATGACCATCATTT
rJMSF045L12+ GGCTTCCCTTGCGATGATGATGACCATCATTTCTTGG
rJMSF029B23+ GGCTTCC
rJMSF023O10+ GG
rJMSF002M11+ GGCTTCC
rJMSF015N06+ GGCTTCCCTTGCGATGATGATGACCATCATTT
rJMSF007A03+ GGCTTCCCTTGCGATGATGATGACCATCATTT
____________________________________________________________
consensus GGCTTCCCTTGCGATGATGATGACCATCATTTCTTGG