Alignment Contig 9679

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF018D02+ TTTTCCACGAAAGCCAATCGTAGACAAATGATTCTTTCGTTCTGAAATTACAATTAAGAG
rJMFF014I08+ AATGATTCTTTCGTTCTGAAATTACAATTAAGAG
rJMSF012F04+ AATGATTCTTTCGTTCTGAAATTACAATTAAGAG
rJMSF013B24+ AATGATTCTTTCGTTCTGAAATTACAATTAAGAG
rJMFF029A01+ AATTACAATTAAGAG
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consensus TTTTCCACGAAAGCCAATCGTAGACAAATGATTCTTTCGTTCTGAAATTACAATTAAGAG

. : . : . : . : . : . :
rJMFF018D02+ GAAGACAAAATGACAAAAAGTATAAGAAACATTCTCCCAGTGAAGAAGTTAAACAGAGAT
rJMFF014I08+ GAAGACAAAATGACAAAAAGTATAAGAAACATTCTCCCAGTGAAGAAGTTAAACAGAGAT
rJMSF012F04+ GAAGACAAAATGACAAAAAGTATAAGAAACATTCTCCCAGTGAAGAAGTTAAACAGAGAT
rJMSF013B24+ GAAGACAAAATGACAAAAAGTATAAGAAACATTCTCCCAGTGAAGAAGTTAAACAGAGAT
rJMFF029A01+ GAAGACAAAATGACAAAAAGTATAAGAAACATTCTCCCAGTGAAGAAGTTAAACAGAGAT
rJMSF053O15+ AAGAAACATTCTCCCAGTGAAGAAGTTAAACAGAGAT
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consensus GAAGACAAAATGACAAAAAGTATAAGAAACATTCTCCCAGTGAAGAAGTTAAACAGAGAT

. : . : . : . : . : . :
rJMFF018D02+ TTAAAAACCTATGT-GCGCCAGACCAAAAACACCTGACTCTTGGCAAATGGCAAATGGCA
rJMFF014I08+ TTAAAAACCTATGT-GCGCCAGACCAAAAACACCTGACTCTTGGCAAATGGCAAATGGCA
rJMSF012F04+ TTAAAAACCTATGT-GCGCCAGACCAAAAACACCTGACTCTTGGCAAATGGCAAATGGCA
rJMSF013B24+ TTAAAAACCTATGT-GCGCCAGACCAAAAACACCTGACTCTTGGCAAATGGCAAATGGCA
rJMFF029A01+ TTAAAAACCTATGT-GCGCCAGACCAAAAACACCTGACTCTTGGCAAATGGCAAATGGCA
rJMSF053O15+ TTNAAAACCTATGTTGCGCCAGACCAAAAACACCTGACTCTTGGCAAATGGCAAATGGCN
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consensus TTAAAAACCTATGT-GCGCCAGACCAAAAACACCTGACTCTTGGCAAATGGCAAATGGCA

. : . : . : . : . : . :
rJMFF018D02+ ACAAGAAGTTTCCGTCCTAACAAACAAGAAACAATTAACACAAGCAAACCTGACCTGCAC
rJMFF011O05+ AAACCTGACCTGCAC
rJMFF014I08+ ACAAGAAGTTTCCGTCCTAACAAACAAGAAACAATTAACACAAGCAAACCTGACCTGCAC
rJMSF012F04+ ACAAGAAGTTTCCGTCCTAACAAACAAGAAACAATTAACACAAGCAAACCTGACCTGCAC
rJMSF013B24+ ACAAGAAGTTTCCGTCCTAACAAACAAGAAACAATTAACACAAGCAAACCTGACCTGCAC
rJMFF029A01+ ACAAGAAGTTTCCGTCCTAACAAACAAGAAACAATTAACACAAGCAAACCTGACCTGCAC
rJMSF053O15+ ACAAGAAGTTTCCGTCCTAACAAACANGAAACAATTAACACAAGCAAACCTGACCTGCAC
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consensus ACAAGAAGTTTCCGTCCTAACAAACAAGAAACAATTAACACAAGCAAACCTGACCTGCAC

. : . : . : . : . : . :
rJMFF018D02+ ATTTTCTCCTACCCAAATTTGAACCCCCCAGGGGGAACATTAGGTTGGTTCTCCCCGAAG
rJMFF011O05+ NTTTTCNCCTACCCAANTTTGAACCCCCCNGGGGNAACNTTAGGTNGGTTCNCCCCNAAG
rJMFF014I08+ ATTTTCTCCTACCCAAATTTGAACCCCCCAGGGGGAACATTAGGTTGGTTCTCCCCGAAG
rJMSF012F04+ ATTTTCTCCTACCCAAATTTGAACCCCCCAGGGGGAACATTAGGTTGGTTCTCCCCGAAG
rJMSF013B24+ ATTTTCTCCTACCCAAATTTGAACCCCCCAGGGGGAACATTAGGTTGGTTCTCCCCGAAG
rJMFF029A01+ ATTTTCTCCTACCCAAATTTGAACCCCCCAGGGGGAACATTAGGTTGGTTCTCCCCGAAG
rJMSF053O15+ ATTTTCTCCTACCCAAATTTGAACCCCCCAGGGGGAACATTAGGTTGGTTCTCCCCGAAG
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consensus ATTTTCTCCTACCCAAATTTGAACCCCCCAGGGGGAACATTAGGTTGGTTCTCCCCGAAG

. : . : . : . : . : . :
rJMFF018D02+ CTAAAGGCCTGCTGCTGATTTCCATCGACTTCATCACCTATGTTTTGCTGTTCATTCTCC
rJMFF011O05+ CTAANGGCCNGCTGNTGATTTCCATC
rJMFF014I08+ CTAAAGGCCTGCTGCTGATTTCCATCGACTTCATCACCTATGTTTTGCTGTTCATTCTCC
rJMSF012F04+ CTAAAGGCCTGCTGCTGATTTCCATCGACTTCATCACCTATGTTTTGCTGTTCATTCTCC
rJMSF013B24+ CTAAAGGCCTGCTGCTGATTTCCATCGACTTCATCACCTATGTTTTGCTGTTCATTCTCC
rJMFF029A01+ CTAAAGGCCTGCTGCTGATTTCCATCGACTTCATCACCTATGTTTTGCTGTTCATTCTCC
rJMSF053O15+ CTAAAGGCCTGCTGCTGATTTCCATCGACTTCATCACCTATGTTTTGCTGTTCATTCTCC
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consensus CTAAAGGCCTGCTGCTGATTTCCATCGACTTCATCACCTATGTTTTGCTGTTCATTCTCC

. : . : . : . : . : . :
rJMFF018D02+ TCCTCTGACCAGAATTTCTCCAAGATCTTCACAGCCTTCTCATAGATCTCATGGTTGTCG
rJMFF014I08+ TCCTCTGACCAGAATTTCTCCAAGATCTTCACAGCCTTCTCATAGATCTCATGGTTGTCG
rJMSF012F04+ TCCTCTGACCAGAATTTCTCCAAGATCTTCACAGCCTTCTCATAGATCTCATGGTTGTCG
rJMSF013B24+ TCCTCTGACCAGAATTTCTCCAAGATCTTCACAGCCTTCTCATAGATCTCATGGTTGTCG
rJMFF029A01+ TCCTCTGACCAGAATTTCTCCAAGATCTTCACAGCCTTCTCATAGATCTCATGGTTGTCG
rJMSF053O15+ TCCTCTGACCAGAATTTCTCCAAGATCTTCACAGCCTTCTCATAGATCTCATGGTTGTCG
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consensus TCCTCTGACCAGAATTTCTCCAAGATCTTCACAGCCTTCTCATAGATCTCATGGTTGTCG

. : . : . : . : . : . :
rJMFF018D02+ TGAGTTTGGAGATGCTCTAGCTTGTCTGAACCTTCGCATTCGTCAATGAGTTGTGCATAT
rJMFF014I08+ TGAGTTTGGAGATGCTCTAGCTTGTCTGAACCTTCGCATTCGTCAATGAGTTGTGCATAT
rJMSF012F04+ TGAGTTTGGAGATGCTCTAGCTTGTCTGAACCTTCGCATTCGTCAATGAGTTGTGCATAT
rJMSF013B24+ TGAGTTTGGAGATGCTCTAGCTTGTCTGAACCTTCGCATTCGTCAATGAGTTGTGCATAT
rJMFF029A01+ TGAGTTTGGAGATGCTCTAGCTTGTCTGAACCTTCGCATTCGTCAATGAGTTGTGCATAT
rJMSF053O15+ TGAGTTTGGAGATGCTCTAGCTTGTCTGAACCTTCGCATTCGTCAATGAGTTGTGCATAT
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consensus TGAGTTTGGAGATGCTCTAGCTTGTCTGAACCTTCGCATTCGTCAATGAGTTGTGCATAT

. : . : . : . : . : . :
rJMFF018D02+ AAATTGATCCCATCATTCAATCCCGTTTCCTTGTCAGCCTCGCCTACCTTCAGAATGTTT
rJMFF014I08+ AAATTGATCCCATCATTCAATCCCGTTTCCTTGTCAGCCTCGCCTACCTTCAGAATGTTT
rJMSF012F04+ AAATTGATCCCATCATTCAATCCCGTTTCCTTGTCAGCCTCGCCTACCTTCAGAATGTTT
rJMSF013B24+ AAATTGATCCCATCATTCAATCCCGTTTCCTTGTCAGCCTCGCCTACCTTCAGAATGTTT
rJMFF029A01+ AAATTGATCCCATCATTCAATCCCGTTTCCTTGTCAGCCTCGCCTACCTTCAGAATGTTT
rJMSF053O15+ AAATTGATCCCATCATTCAATCCCGTTTCCTTGTCAGCCTCGCCTACCTTCAGAATGTTT
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consensus AAATTGATCCCATCATTCAATCCCGTTTCCTTGTCAGCCTCGCCTACCTTCAGAATGTTT

. : . : . : . : . : . :
rJMFF018D02+ TCCAGCCCCTCAAGGCATACAGTAATAATTCTTGGATCGGGACATACCAGGAGATCACAA
rJMFF014I08+ TCCAGCCCCTCAAGGCATACAGTAATAATTCTTGGATCGGGACATACCAGGAGATCACAA
rJMSF012F04+ TCCAGCCCCTCAAGGCATACAGTAATAATTCTTGGATCGGGACATACCAGGAGATCACAA
rJMSF013B24+ TCCAGCCCCTCAAGGCATACAGTAATAATTCTTGGATCGGGACATACCAGGAGATCACAA
rJMFF029A01+ TCCAGCCCCTCAAGGCATACAGTAATAATTCTTGGATCGGGACATACCAGGAGATCACAA
rJMSF053O15+ TCCAGCCCCTCAAGGCATACAGTAATAATTCTTGGATCGGGACATACCAGGAGATCACAA
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consensus TCCAGCCCCTCAAGGCATACAGTAATAATTCTTGGATCGGGACATACCAGGAGATCACAA

. : . : . : . : . : . :
rJMFF018D02+ AGTGGCTTAATGCAGCCTTGATTAACCAAGAACCTAATCTGCTCATGAGAACCTCCAGAA
rJMFF014I08+ AGTGGCTTAATGCAGCCTTGATTAACCAAGAACCTAATCTGCTCATGAGAACCTCCAGAA
rJMSF012F04+ AGTGGCTTAATGCAGCCTTGATTAACCAAGAACCTAATCTGCTCATGAGAACCTCCAGAA
rJMSF013B24+ AGTGGCTTAATGCAGCCTTGATTAACCAAGAACCTAATCTGCTCATGAGAACCTCCAGAA
rJMFF029A01+ AGTGGCTTAATGCAGCCTTGATTAACCAAGAACCTAATCTGCTCATGAGAACCTCCAGAA
rJMSF053O15+ AGTGGCTTAATGCAGCCTTGATTAACCAAGAACCTAATCTGCTCATGAGAACCTCCAGAA
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consensus AGTGGCTTAATGCAGCCTTGATTAACCAAGAACCTAATCTGCTCATGAGAACCTCCAGAA

. : . : . : . : . : . :
rJMFF018D02+ GTGGCATTTGAGATAGCCCATGCTGCCTCTTTCTTGATGTCAAATTCTGCATTTTGAAGG
rJMFF014I08+ GTGGCATTTGAGATAGCCCATGCTGCCTCTTTCTTGATGTCAAATTCTGCAT
rJMSF012F04+ GTGGCATTTGAGATAGCCCATGCTGCCTCTTTCTTGATGTCAAATTCTGCATTTTGAAGG
rJMSF013B24+ GTGGCATTTGAGATAGCCCATGCTGCCTCTTTCTTGATGTCAAATTCTGCATTTTGAAGG
rJMFF029A01+ GTGGCATTTGAGATAGCCCATGCTGCCTCTTTCTTGATGTCAAATTCTGCATTTTGAAGG
rJMSF053O15+ GTGGCATTTGAGATAGCCCATGCTGCCTCTTTCTTGATGTCAAATTCTGCATTTTGAAGG
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consensus GTGGCATTTGAGATAGCCCATGCTGCCTCTTTCTTGATGTCAAATTCTGCATTTTGAAGG

. : . : . : . : . : . :
rJMFF018D02+ AGGTATACCAAAGGAAGAATGATATTTGCCTCAATAACAGCCTGTATTTGAGCTCTATTT
rJMSF012F04+ AGGTATACCAAAGGAAGAATGATATTTGCCTCAATAACAGCCTGTATTTGAGCTCTATTT
rJMSF013B24+ AGGTATACCAAAGGAAGAATGATATTTGCCTCAATAACAGCCTGTATTNGAGCTCTATTT
rJMFF029A01+ AGGTATACCAAAGGAAGAATGATATTTGCCTCAATAACAGCCTGTATTTGAGCTCTATTT
rJMSF053O15+ AGGTATACCAAAGGAAGAATGATATTTGCCTCAATAACAGCCTGTATTTGAGCTCTATTT
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consensus AGGTATACCAAAGGAAGAATGATATTTGCCTCAATAACAGCCTGTATTTGAGCTCTATTT

. : . : . : . : . : . :
rJMFF018D02+ CC
rJMSF012F04+ CCAGCA
rJMSF013B24+ CCAGCA
rJMFF029A01+ CCAGCA
rJMSF053O15+ CCAGCAGTGATATTAGAGATTGTCCAACAAGCTTCTTTCTTGATGCTTTTCTTGTGATTT
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consensus CCAGCAGTGATATTAGAGATTGTCCAACAAGCTTCTTTCTTGATGCTTTTCTTGTGATTT

. : . : . : . : . : . :
rJMSF053O15+ TGAGTAAGAAGTTGATAGAG
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consensus TGAGTAAGAAGTTGATAGAG