Alignment Contig 9662

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF014P07+ AGTCTGGATTTATTACTGTAAGTGAATGTGCACTCCACATTCTTGTTAGATATAACAAGT
rJMFF018L02+ ATTACTGTAAGTGAATGTGCACTCCACATTCTTGTTAGATATAACAAGT
rJMFF008K19+ ATTACTGTAAGTGAATGTGCACTCCACATTCTTGTTAGATATAACAAGT
rJMSF017D21+ GTGCACTCCACATTCTTGTTAGATATAACAAGT
____________________________________________________________
consensus AGTCTGGATTTATTACTGTAAGTGAATGTGCACTCCACATTCTTGTTAGATATAACAAGT

. : . : . : . : . : . :
rJMFF014P07+ CAGGTTGACAAAGAAGTAGGCAGTAAAAGAATTTACACGAAAGCAATCATCAATGGAAGA
rJMFF018L02+ CAGGTTGACAAAGAAGTAGGCAGTAAAAGAATTTACACGAAAGCAATCATCAATGGAAGA
rJMFF008K19+ CAGGTTGACAAAGAAGTAGGCAGTAAAAGAATTTACACGAAAGCAATCATCAATGGAAGA
rJMSF017D21+ CAGGTTGACAAAGAAGTAGGCAGTAAAAGAATTTACACGAAAGCAATCATCAATGGAAGA
____________________________________________________________
consensus CAGGTTGACAAAGAAGTAGGCAGTAAAAGAATTTACACGAAAGCAATCATCAATGGAAGA

. : . : . : . : . : . :
rJMFF014P07+ AACCGCTTTTAGGTAAAAGACGAGTTTCACAATCCACCATTGCAATGGTGGACACCATTA
rJMFF018L02+ AACCGCTTTTAGGTAAAAGACGAGTTTCACAATCCACCATTGCAATGGTGGACACCATTA
rJMFF008K19+ AACCGCTTTTAGGTAAAAGACGAGTTTCACAATCCACCATTGCAATGGTGGACACCATTA
rJMSF017D21+ AACCGCTTTTAGGTAAAAGACGAGTTTCACAATCCACCATTGCAATGGTGGACACCATTA
____________________________________________________________
consensus AACCGCTTTTAGGTAAAAGACGAGTTTCACAATCCACCATTGCAATGGTGGACACCATTA

. : . : . : . : . : . :
rJMFF014P07+ CTAACCGTCCTGACGGTACAGTTTTGCTGCACGTTTACCTGTAAAGGATTTACACGAAAG
rJMFF018L02+ CTAACCGTCCTGACGGTACAGTTTTGCTGCACGTTTACCTG
rJMFF008K19+ CTAACCGTCCTGACGGTACAGTTTTGCTGCACGTTTACCTGTAAAGGATTTACACGAAAG
rJMSF017D21+ CTAACCGTCCTGACGGTACAGTTTTGCTGCACGTTTACCTGTAAAGGATTTACACGAAAG
____________________________________________________________
consensus CTAACCGTCCTGACGGTACAGTTTTGCTGCACGTTTACCTGTAAAGGATTTACACGAAAG

. : . : . : . : . : . :
rJMFF014P07+ CAACCATCAATGGAAGAAAACGAACCGCCTTAGGTAAAACACCCAACAGTTTCATGATCC
rJMFF008K19+ CAACCATCAATGGAAGAAAACGAACCGCCTTAGGTAAAACACCCC-CAGTTTCATGATCC
rJMSF017D21+ CAACCATCAATGGAAGAAAACGAACCGCCTTAGGTAAAACACCCAACAGTTTCATGATCC
____________________________________________________________
consensus CAACCATCAATGGAAGAAAACGAACCGCCTTAGGTAAAACACCCAACAGTTTCATGATCC

. : . : . : . : . : . :
rJMFF014P07+ ACCATTGCAATGGTGGACACCATTACAAACCGTACTGTTTTGCTTCAAGTTTACCTGCTT
rJMFF008K19+ ACCATTGCAATGGTGGACACCATTACAAACCGTACTGTTTTGCTTCAAGTTTACCTGCTT
rJMSF017D21+ ACCATTGCAATGGTGGACACCATTACAAACCGTACTGTTTTGCTTCAAGTTTACCTGCTT
rJMSF027G21+ GTACAGTTTTGCTGCACGTTTACCTGCTT
____________________________________________________________
consensus ACCATTGCAATGGTGGACACCATTACAAACCGTACTGTTTTGCTTCAAGTTTACCTGCTT

. : . : . : . : . : . :
rJMFF014P07+ CAATCCCCATATCCGAATTGTTCGATCATCACTTGCAGAGGCCAGCATATGAGGGTTTGC
rJMFF008K19+ CAATCCCCATATCCGAATTGTTCGATCATCACTTGCAGAGGCCAGCATATGAGGGTTTGC
rJMSF017D21+ CAATCCCCATATCCGAATTGTTCGATCATCACTTGCAGAGGCCAGCATATGAGGGTTTGC
rJMSF027G21+ CAATCCCCATATCCGAATTGTTCGATCATCACTTGCAGAGGCCAGCATATGAGGGTTTGC
____________________________________________________________
consensus CAATCCCCATATCCGAATTGTTCGATCATCACTTGCAGAGGCCAGCATATGAGGGTTTGC

. : . : . : . : . : . :
rJMFF014P07+ TCCATTCCAGCTCACGCAGTTGACAGTCCCGGAATGCCCATGCAATGTCCCAACAAGTTC
rJMFF008K19+ TCCATTCCAGCTCACGCAGTTGACAGTCCCGGAATGCCCATGCAATGTCCCAACAAGTTC
rJMSF017D21+ TCCATTCCAGCTCACGCAGTTGACAGTCCCGGAATGCCCATGCAATGTCCCAACAAGTTC
rJMSF027G21+ TCCATTCCAGCTCACGCAGTTGACAGTCCCGGAATGCCCATGCAATGTCCCAACAAGTTC
____________________________________________________________
consensus TCCATTCCAGCTCACGCAGTTGACAGTCCCGGAATGCCCATGCAATGTCCCAACAAGTTC

. : . : . : . : . : . :
rJMFF014P07+ ACCCGAGCTTCTATGCCATATATAGACCTGCGAGTCCTCACTTCCACTTGCAATAAATGC
rJMFF008K19+ ACCCGAGCTTCTATGCCATATATAGACCTGCGAGTCCTCACTTCCACTTGCAATAAATGC
rJMSF017D21+ ACCCGAGCTTCTATGCCATATATAGACCTGCGAGTCCTCACTTCCACTTGCAATAAATGC
rJMSF027G21+ ACCCGAGCTTCTATGCCATATATAGACCTGCGAGTCCTCACTTCCACTTGCAATAAATGC
____________________________________________________________
consensus ACCCGAGCTTCTATGCCATATATAGACCTGCGAGTCCTCACTTCCACTTGCAATAAATGC

. : . : . : . : . : . :
rJMFF014P07+ TTCATCTAATCCACCAAAACATGACCTTACAACAAAGCGATTGCGTTTGTGGCCTTTAAA
rJMFF008K19+ TTCATCTAATCCACCAAAACATGACCTTACAACAAAGCGATTGCGTTTGTGGCCTTTAAA
rJMSF017D21+ TTCATCTAATCCACCAAAACATGACCTTACAACAAAGCGATTGCGTTTGTGGCCTTTAAA
rJMSF027G21+ TTCATCTAATCCACCAAAACATGACCTTACAACAAAGCGATTGCGTTTGTGGCCTTTAAA
____________________________________________________________
consensus TTCATCTAATCCACCAAAACATGACCTTACAACAAAGCGATTGCGTTTGTGGCCTTTAAA

. : . : . : . : . : . :
rJMFF014P07+ TTTGGCTATGCATGTCACACTTCCATCGATATTCCAAAGATGAATTTCTTGGT
rJMFF008K19+ TTTGGCTATGCATGTCACACTTCCATCGATATTCCAAAGATGAATTTCTTGGTTAAGCAG
rJMSF017D21+ TTTGGCTATGCATGTCACACTTCCATCGATATTCCAAAGATGAATTTCTTGGTTAAGCAG
rJMSF027G21+ TTTGGCTATGCATGTCACACTTCCATCGATATTCCAAAGATGAATTTCTTGGTTAAGCAG
____________________________________________________________
consensus TTTGGCTATGCATGTCACACTTCCATCGATATTCCAAAGATGAATTTCTTGGTTAAGCAG

. : . : . : . : . : . :
rJMFF008K19+ AC
rJMSF017D21+ ACTAACCAAAAAGGTACTTGCTGNCCTTGGATAATACAAAATGAGGTTATAACTTGATCC
rJMSF027G21+ ACTAACCAAAA-GGTACTTGCTGTCCTTGGATAATACAAA-TGAGGTTATAACTTGATCC
____________________________________________________________
consensus ACTAACCAAAAAGGTACTTGCTGTCCTTGGATAATACAAAATGAGGTTATAACTTGATCC

. : . : . : . : . : . :
rJMSF017D21+ TCCTTAATTGATTTCTCAGCTTTTGATTCCC
rJMSF027G21+ TCCTTAATTGATTTCTCAGCTTTTGATTCCCATCCAAATAACAGTATTGTTTTCTCTTTA
____________________________________________________________
consensus TCCTTAATTGATTTCTCAGCTTTTGATTCCCATCCAAATAACAGTATTGTTTTCTCTTTA

. : . : . : . : . : . :
rJMSF027G21+ TGAACAGAAACGATCTGTTTCCCATCGGTAGTGATCCCAATATCAGAAGTTCTAATAGTC
____________________________________________________________
consensus TGAACAGAAACGATCTGTTTCCCATCGGTAGTGATCCCAATATCAGAAGTTCTAATAGTC

. : . : . : . : . : . :
rJMSF027G21+ CTTTGCCCTTTCCAACATTCCAACTCATTTCCATCAAGATCCCACATGCTAATGCTTTTG
____________________________________________________________
consensus CTTTGCCCTTTCCAACATTCCAACTCATTTCCATCAAGATCCCACATGCTAATGCTTTTG

. : . : . : . : . : . :
rJMSF027G21+ TCAGTAACGCCAGTAAATATCCTTTTGCCATCGGGAGAC
____________________________________________________________
consensus TCAGTAACGCCAGTAAATATCCTTTTGCCATCGGGAGAC