Alignment Contig 9651

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF012K19+ ATTTTGTGGCCCAAACATTCAAACACTTTACATGAATTTTTATACTTTCCCTCAACTCCA
rJMSF026A14+ AACACTTTACATGAATTTTTATACTTTCCCTCAACTCCA
rJMSF034G17+ AACACTTTACATGAATTTTTATACTTTCCCTCAACTCCA
rJMSF041K02+ AATTTTTATACTTTCCCTCAACTCCA
rJMSF044C23+ AACACTTTACATGAATTTTTATACTTTCCCTCAACTCCA
rJMSF035D19+ AACACTTTACATGAATTTTTATACTTTCCCTCAACTCCA
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consensus ATTTTGTGGCCCAAACATTCAAACACTTTACATGAATTTTTATACTTTCCCTCAACTCCA

. : . : . : . : . : . :
rJMFF012K19+ CTCTTGTATATATGGTGTTCTTGATTCTTGATTTCTTGATAAC-TAATACACTA--CTAC
rJMSF026A14+ CTCTTGTATATATGGTGTTCTTGATTCTTGATTTCTTGATAAC-TAATACACTA--CTAC
rJMSF034G17+ CTCTTGTATATATGGTGTTCTTGATTCTTGATTTCTTGATAAC-TAATACACTA--CTAC
rJMSF041K02+ CGCTTGTATATATGGTGTTCTTGATTCTTGATTTCNTGATAACGTAANACACTGAGCTAC
rJMSF044C23+ CTCTTGTATATATGGTGTTCTTGATTCTTGATTTCTTGATAAC-TAATACACTA--CTAC
rJMSF035D19+ CTCTTGTATATATGGTGTTCTTGATTCTTGATTTCTTGATAAC-TAATACACTA--CTAC
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consensus CTCTTGTATATATGGTGTTCTTGATTCTTGATTTCTTGATAAC-TAATACACTA--CTAC

. : . : . : . : . : . :
rJMFF012K19+ TACAAATAAAAAGTGCAACACATACAGATTCAGCTGCACTAGTACAGTTAAGCTAGTTGA
rJMSF026A14+ TACAAATAAAAAGTGCAACACATACAGATTCAGCTGCACTAGTACAGTTAAGCTAGTTGA
rJMSF034G17+ TACAAATAAAAAGTGCAACACATACAGATTCAGCTGCACTAGTACAGTTAAGCTAGTTGA
rJMSF041K02+ TACAAATANAAGGNGCAACACATACGGANNCAGCTGCACTAGTACAGATAAGCTAGTTGA
rJMSF044C23+ TACAAATAAAAAGTGCAACACATACAGATTCAGCTGCACTAGTACAGTTAAGCTAGTTGA
rJMSF035D19+ TACAAATAAAAAGTGCAACACATACAGATTCAGCTGCACTAGTACAGTTAAGCTAGTTGA
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consensus TACAAATAAAAAGTGCAACACATACAGATTCAGCTGCACTAGTACAGTTAAGCTAGTTGA

. : . : . : . : . : . :
rJMFF012K19+ ACTTCATACCTCTCACATGAATGGATTGTGAAAGGGCAAATTAAAGCATGGAATCAGTGT
rJMSF026A14+ ACTTCATACCTCTCACATGAATGGATTGTGAAAGGGCAAATTAAAGCATGGAATCAGTGT
rJMSF034G17+ ACTTCATACCTCTCACATGAATGGATTGTGAAAGGGCAAATTAAAGCATGGAATCAGTGT
rJMSF041K02+ ACTTNNTACCTCTCACNTGAATGGATTGNGAAAGGGCAAAGTAAAGCATGGNATCAGNGT
rJMSF044C23+ ACTTCATACCTCTCACATGAATGGATTGTGAAAGGGCAAATTAAAGCATGGAATCAGTGT
rJMSF035D19+ ACTTCATACCTCTCACATGAATGGATTGTGAAAGGGCAAATTAAAGCATGGAATCAGTGT
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consensus ACTTCATACCTCTCACATGAATGGATTGTGAAAGGGCAAATTAAAGCATGGAATCAGTGT

. : . : . : . : . : . :
rJMFF012K19+ TATCTTCTCCGTATGGTATCAGCAAGGAGTATAATAAAGTGCAGATATACTCACCAGAAT
rJMSF026A14+ TATCTTCTCCGTATGGTATCAGCAAGGAGTATAATAAAGTGCAGATATACTCACCAGAAT
rJMSF034G17+ TATCTTCTCCGTATGGTATCAGCAAGGAGTATAATAAAGTGCAGATATACTCACCAGAAT
rJMSF041K02+ TANCTTCTCCGCATGGTNNCAGCNAGGAGTATAANAAAGTGNNGATATACTCACCAGAAT
rJMSF044C23+ TATCTTCTCCGTATGGTATCAGCAAGGAGTATAATAAAGTGCAGATATACTCACCAGAAT
rJMSF035D19+ TATCTTCTCCGTATGGTATCAGCAAGGAGTATAATAAAGTGCAGATATACTCACCAGAAT
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consensus TATCTTCTCCGTATGGTATCAGCAAGGAGTATAATAAAGTGCAGATATACTCACCAGAAT

. : . : . : . : . : . :
rJMFF012K19+ TTTCAAGTAATCCAGGCCAGAATGAAACTGTGAGTTGAATTTCTTCATCTTCTTCTCTTC
rJMSF026A14+ TTTCAAGTAATCCAGGCCAGAATGAAACTGTGAGTTGAATTTCTTCATCTTCTTCTCTTC
rJMSF034G17+ TTTCAAGTAATCCAGGCCAGAATGAAACTGTGAGTTGAATTTCTTCATCTTCTTCTCTTC
rJMSF041K02+ TTTCAAGTAANCCANGCCAGAATGAAACNGTGAGTTGAATTTCTTCNTCTTCTTCTCTTC
rJMSF044C23+ TTTCAAGTAATCCAGGCCAGAATGAAACTGTGAGTTGAATTTCTTCATCTTCTTCTCTTC
rJMSF035D19+ TTTCAAGTAATCCAGGCCAGAATGAAACTGTGAGTTGAATTTCTTCATCTTCTTCTCTTC
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consensus TTTCAAGTAATCCAGGCCAGAATGAAACTGTGAGTTGAATTTCTTCATCTTCTTCTCTTC

. : . : . : . : . : . :
rJMFF012K19+ CTGTTTCCTCCCAATTGCCCAGATTTAAATGCGTGCTCTTGTTCTTGAAGAAAAGCAAGC
rJMSF026A14+ CTGTTTCCTCCCAATTGCCCAGATTTAAATGCGTGCTCTTGTTCTTGAAGAAAAGCAAGC
rJMSF034G17+ CTGTTTCCTCCCAATTGCCCAGATTTAAATGCGTGCTCTTGTTCTTGAAGAAAAGCAAGC
rJMSF041K02+ CTGTTTCCTCCCAATNGCCCNGATNTNAATGCGNGCTCTNGNTCTTGAAGAAAAGCAGGC
rJMSF044C23+ CTGTTTCCTCCCAATTGCCCAGATTTAAATGCGTGCTCTTGTTCTTGAAGAAAAGCAAGC
rJMSF035D19+ CTGTTTCCTCCCAATTGCCCAGATTTAAATGCGTGCTCTTGTTCTTGAAGAAAAGCAAGC
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consensus CTGTTTCCTCCCAATTGCCCAGATTTAAATGCGTGCTCTTGTTCTTGAAGAAAAGCAAGC

. : . : . : . : . : . :
rJMFF012K19+ GCTTTCCCATACTTTTCAGACCTTTCTTCTGCTAGAGCTGCTTTCTCCTTCTCCTTCACC
rJMSF026A14+ GCTTTCCCATACTTTTCAGACCTTTCTTCTGCTAGAGCTGCTTTCTCCTTCTCCTTCACC
rJMSF034G17+ GCTTTCCCATACTTTTCAGACCTTTCTTCTGCTAGAGCTGCTTTCTCCTTCTCCTTCACC
rJMSF041K02+ GCTNTNCCATACNTTTCAGACCTTTCNTCTGCTANAGCTGCTTTCTCCTTCTCCNTCGCC
rJMSF044C23+ GCTTTCCCATACTTTTCAGACCTTTCTTCTGCTAGAGCTGCTTTCTCCTTCTCCTTCACC
rJMSF035D19+ GCTTTCCCATACTTTTCAGACCTTTCTTCTGCTAGAGCTGCTTTCTCCTTCTCCTTCACC
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consensus GCTTTCCCATACTTTTCAGACCTTTCTTCTGCTAGAGCTGCTTTCTCCTTCTCCTTCACC

. : . : . : . : . : . :
rJMFF012K19+ CCAAACAAGAAATGATTATCTTTACGAATTTCACGAGCAGCTCCTTTCGCTTCCTGTTTT
rJMSF026A14+ CCAAACAAGAAATGATTATCTTTACGAATTTCACGAGCAGCTCCTTTCGCTTCCTGTTTT
rJMSF034G17+ CCAAACAAGAAATGATTATCTTTACGAATTTCACGAGCAGCTCCTTTCGCTTCCTGTTTT
rJMSF041K02+ CCANACAAGAANTGANTATCNTNACGAATTTCACGAGCAGCTCCTTTCGCTTCCTGNTTT
rJMSF044C23+ CCAAACAAGAAATGATTATCTTTACGAATTTCACGAGCAGCTCCTTTCGCTTCCTGTTTT
rJMSF035D19+ CCAAACAAGAAATGATTATCTTTACGAATTTCACGAGCAGCTCCTTTCGCTTCCTGTTTT
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consensus CCAAACAAGAAATGATTATCTTTACGAATTTCACGAGCAGCTCCTTTCGCTTCCTGTTTT

. : . : . : . : . : . :
rJMFF012K19+ ACGCGTTTCTTTAACTTCCTTATCTCAGCCCGTTCACGATCTGGGTCATAATCTCTACCC
rJMSF026A14+ ACGCGTTTCTTTAACTTCCTTATCTCAGCCCGTTCACGATCTGGGTCATAATCTCTACCC
rJMSF034G17+ ACGCGTTTCTTTAACTTCCTTATCTCAGCCCGTTCACGATCTGGGTCATAATCTCTACCC
rJMSF041K02+ ACNCGNTTCTTTAACTTCCTTATCNCAGCCCGTTCACGANCTGGGTCNTAATCTCTACCC
rJMSF044C23+ ACGCGTTTCTTTAACTTCCTTATCTCAGCCCGTTCACGATCTGGGTCATAATCTCTACCC
rJMSF035D19+ ACGCGTTTCTTTAACTTCCTTATCTCAGCCCGTTCACGATCTGGGTCATAATCTCTACCC
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consensus ACGCGTTTCTTTAACTTCCTTATCTCAGCCCGTTCACGATCTGGGTCATAATCTCTACCC

. : . : . : . : . : . :
rJMFF012K19+ TTAATAAAGTTGTCTTCAAATTTGGGATTAACCATCTTGATAGGCACAGGCTTTTGCTTC
rJMSF026A14+ TTAATAAAGTTGTCTTCAAATTTGGGATTAACCATCTTGATAGGCACAGGCTTTTGCTTC
rJMSF034G17+ TTAATAAAGTTGTCTTCAAATTTGGGATTAACCATCTTGATAGGCACAGGCTTTTGCTTC
rJMSF041K02+ T
rJMSF044C23+ TTAATAAAGTTGTCTTCAAATTTGGGATTAACCATCTTGATAGGCACAGGCTTTTGCTTC
rJMSF035D19+ TTAATAAAGTTGTCTTCAAATTTGGGATTAACCATCTTGATAGGCACAGGCTTTTGCTTC
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consensus TTAATAAAGTTGTCTTCAAATTTGGGATTAACCATCTTGATAGGCACAGGCTTTTGCTTC

. : . : . : . : . : . :
rJMFF012K19+ CTCATTCTTAGAGGTTGACGCAGCCTGTGATTTTCCTCAACTTTGTTTTCAA-TTAGTTG
rJMSF026A14+ CTCATTCTTAGAGGTTGACGCAGCCTGTGATTTTCCTCAACTTTGTTTTCAAATTAGTTG
rJMSF034G17+ CTCATTCTTAGAGGTTGACGCAGCCTGTGATTTTCCTCAACTTTGTTTTCAA-TTAGTTG
rJMSF044C23+ CTCATTCTTAGAGGTTGACGCAGCCTGTGATTTTCCTCAACTTTGTTTTCAA-TTAGTTG
rJMSF035D19+ CTCATTCTTAGAGGTTGACGCAGCCTGTGATTTTCCTCAACTTGGTTTTCAA-TTAGTTG
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consensus CTCATTCTTAGAGGTTGACGCAGCCTGTGATTTTCCTCAACTTTGTTTTCAA-TTAGTTG

. : . : . : . : . : . :
rJMFF012K19+ GATAACATTCTTGATTTTCTCCTGTAATATGTCTGGCATATGATTCTGTGCTGCCAGTTC
rJMSF026A14+ GATAACATTCTTGATTTTCTCCTGTAATATGTCTGGCATATGATTCTGTG
rJMSF034G17+ GATAACATTCTTGATTTTCTCCNGTAA-ATGTCTGGCATATGATTCTGTGCTGCCAGTTC
rJMSF044C23+ GATAACATTCTTGATTTTCTCCTGTAATATGTCTGGCATATGATTCTGTG
rJMSF035D19+ GATAACATTCTTGATTTTCTCCTGTAATATGTCTGGCATATGATTCTGTGCTGCCAGTTC
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consensus GATAACATTCTTGATTTTCTCCTGTAATATGTCTGGCATATGATTCTGTGCTGCCAGTTC

. : . : . : . : . : . :
rJMFF012K19+ ATTCAAAAGCTTTAAGATTGGCATGAA
rJMSF034G17+ AT
rJMSF035D19+ AT
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consensus ATTCAAAAGCTTTAAGATTGGCATGAA