Alignment Contig 9640

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF010L23+ GGTTCCTTAAACCTTAATGCATGTTCNTTACAAAATAATACCCAAAAAAAATGTTGTCTT
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consensus GGTTCCTTAAACCTTAATGCATGTTCNTTACAAAATAATACCCAAAAAAAATGTTGTCTT

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rJMFF010L23+ GAAGAGGTAATATGAAAAGAGGCAAACAAAATGTTCTGAATTACACTG-AAAAATACACT
rJMSF010I19+ AAGAGGCAAACAANATGTTCTGAATTACNCTGGAAAAATACNCT
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consensus GAAGAGGTAATATGAAAAGAGGCAAACAAAATGTTCTGAATTACACTGGAAAAATACACT

. : . : . : . : . : . :
rJMFF010L23+ GGAAGGTTGTTTATTGAGAGATAGAGAGAGACAATAATTTATGATGATGGCCTATAAAGT
rJMFF037I19+ AGAGAGAGACAANANTTTATGATGATGGCCTATAAAGT
rJMSF010I19+ GGAAGGNTGTTTATTGAGAGATAGAGAGAGACAATAATTTATGATGATGGCCTATAAAGT
rJMSF006K12+ TTTATGATGATGGCCTATAAAGT
rJMFF044A16+ GGAAGGTTGTTTATTGAGAGATAGAGAGAGACAATAATTTATGATGATGGCCTATAAAGT
rJMFF041E08+ GGAAGGTTGTTTATTGAGAGATAGAGAGAGACAATAATTTATGATGATGGCCTATAAAGT
rJMFF007N05+ AGAGAGAGACAANANTTTATGATGATGGCCTATAAAGT
rJMFF004L11+ TTTATGATGATGGCCTATAAAGT
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consensus GGAAGGTTGTTTATTGAGAGATAGAGAGAGACAATAATTTATGATGATGGCCTATAAAGT

. : . : . : . : . : . :
rJMFF010L23+ TTATGTTCCTTTTGGGACTACACATACCCC-TTTTGCAGAAACCCACAAATCCCAGACTG
rJMFF037I19+ TTATGTTCCTTTTGGGACTACACATACCCC-TTTTGCANAAACCCACAAATCCCAGACTG
rJMSF010I19+ TTATGTTCCTTTTGGGACTACACATACCCC-TTTTGCAGAAACCCACAAATCCCAGACTG
rJMSF006K12+ TTATGTTCCNTTTGGGACNACACATACCCCATTTTGCAGAAACCCACAAATCCCAGACTG
rJMFF044A16+ TTATGTTCCTTTTGGGACTACACATACCCC-TTTTGCAAAAACCCACAAATCCCAAACTG
rJMFF041E08+ TTATGTTCCTTTTGGGACTACACATACCCC-TTTTGCAGAAACCCACAAATCCCAGACTG
rJMFF007N05+ TTATGTTCCTTTTGGGACTACACATACCCC-TTTTGCANAANCCCACAAATCCCNGACTG
rJMFF004L11+ TTATGTTCCTTTTGGGACTACACATACCCC-TTTTGCANAAACCCACAAATCCCAGACTG
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consensus TTATGTTCCTTTTGGGACTACACATACCCC-TTTTGCAGAAACCCACAAATCCCAGACTG

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rJMFF010L23+ TATCTAAAGAATGAATAAAAAGCTTTCCATAAACCAAAAAAAAAAAAAAAAA
rJMFF037I19+ TATCTANAGAATGAATAAAAAGCTTTCCATAGAACCAAAAAAAAAAAAAA
rJMSF010I19+ TATCTAAAGAATGAATAAAAAGCTTTCCATANACCAAAAAAAAAAAAAAA
rJMSF006K12+ TATC
rJMFF044A16+ TATCTAAAGAATGAATAAAAAGCTTTCCATAAACCAAAAAAAAAAAAAAAAC-AAAACCA
rJMFF041E08+ TATCTAAAGAATGAATAAAAAGCTTTCCATAAACCAAAAAAAAAAAAAAAAACAAAACCA
rJMFF007N05+ TATCTANAGAATGAATAAAAAGCTTTCCATGNACCAAAAAAAAAAAAAAAA
rJMFF004L11+ TATCTAAAGAATGAATAAAAAGCTTTCCATAAACCAAAAAAAAAAAAAAA
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consensus TATCTAAAGAATGAATAAAAAGCTTTCCATAAACCAAAAAAAAAAAAAAAAACAAAACCA

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rJMFF044A16+ AAGATTGAATGGGTCCTGAACACAACACCACCAAAGCCCTTTTTCCCTCTTCTTCTTCAA
rJMFF041E08+ AAGATTGAATGTGTCCTGTACACAACACCACCAGAGCCCTCTTTCCCTCTTCTTCTTCAA
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consensus AAGATTGAATGGGTCCTGAACACAACACCACCAAAGCCCTCTTTCCCTCTTCTTCTTCAA

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rJMFF044A16+ AAATCAAACACCTATAATGGATGCTTTGATCTTCCCCATGGGGGCTCCTCGGCTAGGCTC
rJMFF041E08+ CAATCAAACACCTATTATGTATGCTTTGATCTTCTCCATGGCGGCTCCTCGGCTAGGCTC
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consensus AAATCAAACACCTATAATGGATGCTTTGATCTTCCCCATGGCGGCTCCTCGGCTAGGCTC

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rJMFF044A16+ TGTTCCAAAAAATCTTTCCACACTCACTCGAGCCGTCTAAGGCGTCATTTACTCGCAATC
rJMFF041E08+ TGTTCCAAACAATCTTTCCACACTCACTCGAGCCGTCTAAGGCGTCATTTACTCGCAATC
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consensus TGTTCCAAAAAATCTTTCCACACTCACTCGAGCCGTCTAAGGCGTCATTTACTCGCAATC

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rJMFF044A16+ CAACCCGCATACTTCTAGCACAAGCCCGTCTCTCAAAAAAAAGGGGTTGATTCGGACCCA
rJMFF041E08+ CAACCCGCATACTTCTAGCACGAGCCCGTCCCTCGAGACGAAGGGGTTGATTCGGACCCA
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consensus CAACCCGCATACTTCTAGCACAAGCCCGTCCCTCAAAAAAAAGGGGTTGATTCGGACCCA

. : . : . : . : . : . :
rJMFF044A16+ TAGGAGCGAAAAAATGGAGGCGAGGAGAATGGACCACCCTACTATAATGGTCGGAACCCC
rJMFF041E08+ TAGGAGCGAGAAGATGGAGGCGAGGAGAATGGACCACACTACTATAATGGTCGGAACCCC
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consensus TAGGAGCGAAAAAATGGAGGCGAGGAGAATGGACCACACTACTATAATGGTCGGAACCCC

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rJMFF044A16+ GTTTTGCTTCCCCATCATACCTTTGAGGAAAGGGTA
rJMFF041E08+ GTTTTGCTTCCCCATCATACCTTTGAGGAAAGGGTAGAGATGGACAATGACCCATAAGG
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consensus GTTTTGCTTCCCCATCATACCTTTGAGGAAAGGGTAGAGATGGACAATGACCCATAAGG